Rroxscaffold_5G00364440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018634
Physical Location & Seq
Forward (+)
45674576 .. 45675146
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364440.1

Sequence Viewer

Length: 309 bp
ATGAAGACGGGAAAAGATTTTCTGCTCTCGACATCTCACGTGATCAGCGACTTCACCTTACCTTGCAACCTCCCTAATGTGTTGAATCATGCAAAACGTGAAGGGGTTTTAATTGCAGAGGATTGGCTCGAGTATAAGGTATTTGCTTCTCATCCAAATATGGAATTTTTTGCAAGATCACGGGGTATTGGCCGGGCGTTTGTCATCACGAGAGATTGTCCGTATCAACTCCTAGGACATGTTGACATACCCTACTTCGCCCACCGTGTGGCTTCTATGGCTCTTCTTTTGGGCATTGCGTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.44

Weight (kDa)

7.86

Isoelectric Point (pI)

21.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 232
BauI CACGAG 1 cut(s) 208
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 11
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 1 cut(s) 233
BlnI CCTAGG 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 294
BshFI GGCC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 128
Bsp143I GATC 2 cut(s) 42, 176
BspANI GGCC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 2 cut(s) 42, 176
BssSI CACGAG 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 40
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 45, 179
BstMBI GATC 2 cut(s) 42, 176
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 151
CseI GACGC 1 cut(s) 288
CviAII CATG 2 cut(s) 89, 239
CviJI RGCY 4 cut(s) 127, 192, 272, 281
CviKI_1 RGCY 4 cut(s) 127, 192, 272, 281
DpnI GATC 2 cut(s) 44, 178
DpnII GATC 2 cut(s) 42, 176
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 92, 242
FaiI YATR 6 cut(s) 90, 135, 161, 240, 248, 278
FatI CATG 2 cut(s) 88, 238
FbaI TGATCA 1 cut(s) 42
FokI GGATG 1 cut(s) 138
FspBI CTAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 288
Hin1II CATG 2 cut(s) 92, 242
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 28, 208, 306
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 39, 97
HpyCH4V TGCA 4 cut(s) 66, 92, 116, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 2 cut(s) 39, 97
Hsp92II CATG 2 cut(s) 92, 242
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 42, 176
LguI GCTCTTC 1 cut(s) 288
LpnPI CCDG 1 cut(s) 206
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 39, 97
MalI GATC 2 cut(s) 44, 178
MboI GATC 2 cut(s) 42, 176
MboII GAAGA 2 cut(s) 16, 275
MluCI AATT 2 cut(s) 111, 164
MnlI CCTC 2 cut(s) 80, 112
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 194
NdeII GATC 2 cut(s) 42, 176
NlaIII CATG 2 cut(s) 92, 242
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 128
PciI ACATGT 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 268
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PscI ACATGT 1 cut(s) 238
PspCI CACGTG 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 2 cut(s) 42, 176
ScrFI CCNGG 1 cut(s) 194
SetI ASST 6 cut(s) 42, 59, 64, 72, 100, 141
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 111, 164
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 42, 100
TaqI TCGA 2 cut(s) 29, 129
TasI AATT 2 cut(s) 111, 164
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 268
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 232
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.