Rmu_sc0002560.1_g000016

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002560.1
OG0018634
Physical Location & Seq
Forward (+)
78381 .. 79169
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002560.1_g000016.1.cds

Sequence Viewer

Length: 789 bp
atgacaacaacgcctgtgggaaacaacggagatagcatggtttggcaccccaagggaacagggacatgctacagttactgcataacagagcttcttcaagccaaggccaaagtcatcactggaatagacgttaaactgtctattcctcatgttatcacccgcttaagggggaagcacacctccatggaaaatgtgctcgactttgcaaaatttgaaggagttttaatccatgatgactggcccaggttcaagcatggtggtggaaggagagtttttgtgaagaattggaaaccatttcatgggcgagaacaattggtggcggggatgcaacgcgggcctttgatcggcgtctggaagccgcatatggccttggaataccaccctgctattgcaaagaggattgtgacactggaggatgtcgaattgtatgatattctggagcaacagagagcaacagagaaaggctattggcccggagtttgtaagcacgagttttgtcgcaactttgaagaagagattcctgagttttgctattattgcagcttttatggttcaaaccggggtcactgtgtagtcataactggatataacagagatccaactgtggacatcccctattgggagtttagaaacaactggggaccgaagtgggggaggcacggttatggaagatttgaaatgactgtgggagaggaagaggatcctaagttgcttgaaaagccaattggagttttagatttggagagaagaggatatggggctgaaataaagaagattacctggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

262

Amino Acids

30.34

Weight (kDa)

8.1

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 160, 320, 333, 359
AclWI GGATC 3 cut(s) 590, 695, 708
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 348
AfiI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
AflII CTTAAG 1 cut(s) 163
AgsI TTSAA 7 cut(s) 98, 215, 250, 509, 555, 677, 716
AjnI CCWGG 2 cut(s) 242, 779
AjuI GAANNNNNNNTTGG 2 cut(s) 708, 740
AluBI AGCT 2 cut(s) 91, 543
AluI AGCT 2 cut(s) 91, 543
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 3 cut(s) 590, 695, 708
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 5 cut(s) 105, 239, 335, 366, 470
ApeKI GCWGC 1 cut(s) 540
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 516
AspS9I GGNCC 4 cut(s) 240, 335, 471, 641
AsuC2I CCSGG 2 cut(s) 474, 560
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 641
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 45
BauI CACGAG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 244, 781
BcnI CCSGG 2 cut(s) 474, 560
BfmI CTRYAG 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 359, 541
BlsI GCNGC 2 cut(s) 360, 542
Bme1390I CCNGG 4 cut(s) 244, 474, 560, 781
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 4 cut(s) 240, 335, 471, 641
BmiI GGNNCC 3 cut(s) 47, 642, 702
BmrFI CCNGG 4 cut(s) 244, 474, 560, 781
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 646
BpmI CTGGAG 2 cut(s) 431, 458
BpuMI CCSGG 2 cut(s) 474, 560
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
Bse1I ACTGG 5 cut(s) 124, 242, 414, 586, 641
BseBI CCWGG 2 cut(s) 244, 781
BseDI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BseGI GGATG 4 cut(s) 330, 421, 609, 789
BseLI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 5 cut(s) 124, 242, 414, 586, 641
BseXI GCAGC 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 5 cut(s) 107, 241, 337, 368, 472
BshNI GGYRCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 474, 559
BslFI GGGAC 2 cut(s) 76, 654
BslI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
BsmFI GGGAC 2 cut(s) 76, 654
BsnI GGCC 5 cut(s) 107, 241, 337, 368, 472
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 342, 595, 700
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 4 cut(s) 160, 320, 333, 359
BspANI GGCC 5 cut(s) 107, 241, 337, 368, 472
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 47, 642, 702
BspPI GGATC 3 cut(s) 590, 695, 708
BspT107I GGYRCC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 163
BsrI ACTGG 5 cut(s) 124, 242, 414, 586, 641
BssECI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BssMI GATC 3 cut(s) 342, 595, 700
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 4 cut(s) 51, 102, 183, 369
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 244, 781
Bst4CI ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
Bst6I CTCTTC 3 cut(s) 507, 690, 742
BstACI GRCGYC 1 cut(s) 348
BstAFI CTTAAG 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 522, 705
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 330, 421, 609, 789
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 3 cut(s) 345, 598, 703
BstMBI GATC 3 cut(s) 342, 595, 700
BstMWI GCNNNNNNNGC 3 cut(s) 334, 537, 718
BstNI CCWGG 2 cut(s) 244, 781
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 4 cut(s) 242, 472, 558, 779
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 552
BstX2I RGATCY 2 cut(s) 595, 700
BstYI RGATCY 2 cut(s) 595, 700
BsuRI GGCC 5 cut(s) 107, 241, 337, 368, 472
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 330, 421, 609, 789
BtsIMutI CAGTG 3 cut(s) 117, 407, 565
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 78
Cfr13I GGNCC 4 cut(s) 240, 335, 471, 641
CseI GACGC 1 cut(s) 337
CspCI CAANNNNNGTGG 3 cut(s) 32, 238, 273
CviAII CATG 7 cut(s) 37, 66, 149, 184, 230, 254, 299
DdeI CTNAG 2 cut(s) 522, 705
DpnI GATC 3 cut(s) 344, 597, 702
DpnII GATC 3 cut(s) 342, 595, 700
Eam1104I CTCTTC 3 cut(s) 507, 690, 742
EarI CTCTTC 3 cut(s) 507, 690, 742
Eco130I CCWWGG 4 cut(s) 51, 102, 183, 369
Eco47I GGWCC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 242, 779
EcoT14I CCWWGG 4 cut(s) 51, 102, 183, 369
ErhI CCWWGG 4 cut(s) 51, 102, 183, 369
FaeI CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
FaqI GGGAC 2 cut(s) 76, 654
FatI CATG 7 cut(s) 36, 65, 148, 183, 229, 253, 298
FauI CCCGC 3 cut(s) 167, 313, 326
FauNDI CATATG 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 359, 541
FokI GGATG 3 cut(s) 337, 428, 596
Fsp4HI GCNGC 2 cut(s) 359, 541
GluI GCNGC 2 cut(s) 359, 541
GsuI CTGGAG 2 cut(s) 431, 458
HaeIII GGCC 5 cut(s) 107, 241, 337, 368, 472
HapII CCGG 2 cut(s) 474, 559
HgaI GACGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
HinfI GANTC 1 cut(s) 517
HpaII CCGG 2 cut(s) 474, 559
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 607
Hpy188III TCNNGA 3 cut(s) 352, 437, 521
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 209, 258
HpyCH4III ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 81, 206, 328, 392, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 537, 718
HpyF3I CTNAG 2 cut(s) 522, 705
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
Kzo9I GATC 3 cut(s) 342, 595, 700
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 74, 403, 563
MalI GATC 3 cut(s) 344, 597, 702
MboI GATC 3 cut(s) 342, 595, 700
MboII GAAGA 8 cut(s) 86, 292, 521, 524, 681, 707, 759, 784
MfeI CAATTG 2 cut(s) 311, 723
MflI RGATCY 2 cut(s) 595, 700
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 209, 283, 311, 422, 723
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 8 cut(s) 156, 190, 390, 406, 648, 685, 691, 743
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 132, 164, 224
MslI CAYNNNNRTG 3 cut(s) 182, 258, 663
MspCI CTTAAG 1 cut(s) 163
MspI CCGG 2 cut(s) 474, 559
MspR9I CCNGG 4 cut(s) 244, 474, 560, 781
MunI CAATTG 2 cut(s) 311, 723
MvaI CCWGG 2 cut(s) 244, 781
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 334, 537, 718
NciI CCSGG 2 cut(s) 474, 560
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 363
NdeII GATC 3 cut(s) 342, 595, 700
NlaIII CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
NlaIV GGNNCC 3 cut(s) 47, 642, 702
NmuCI GTSAC 2 cut(s) 403, 563
NspI RCATGY 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 2 cut(s) 360, 542
Psp6I CCWGG 2 cut(s) 242, 779
PspGI CCWGG 2 cut(s) 242, 779
PspN4I GGNNCC 3 cut(s) 47, 642, 702
PspPI GGNCC 4 cut(s) 240, 335, 471, 641
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 2 cut(s) 595, 700
RseI CAYNNNNRTG 3 cut(s) 182, 258, 663
SaqAI TTAA 3 cut(s) 132, 164, 224
SatI GCNGC 2 cut(s) 359, 541
Sau3AI GATC 3 cut(s) 342, 595, 700
Sau96I GGNCC 4 cut(s) 240, 335, 471, 641
ScrFI CCNGG 4 cut(s) 244, 474, 560, 781
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 93, 132, 182, 248, 545, 782
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 3 cut(s) 182, 258, 663
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 5 cut(s) 209, 283, 311, 422, 723
SsiI CCGC 4 cut(s) 160, 320, 333, 359
StyD4I CCNGG 4 cut(s) 242, 472, 558, 779
StyI CCWWGG 4 cut(s) 51, 102, 183, 369
TaaI ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 198, 420
TaqII GACCGA 1 cut(s) 658
TasI AATT 5 cut(s) 209, 283, 311, 422, 723
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 132, 164, 224
Tru9I TTAA 3 cut(s) 132, 164, 224
TscAI CASTG 3 cut(s) 124, 414, 572
TseFI GTSAC 2 cut(s) 403, 563
TseI GCWGC 1 cut(s) 540
Tsp45I GTSAC 2 cut(s) 403, 563
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 124, 414, 572
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.