Rh6BG051700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018634
Physical Location & Seq
Forward (+)
8279866 .. 8283990
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG051700.1

Sequence Viewer

Length: 366 bp
ATGGAAAATGTCCTCAACTTTGCACAATATGAAGGAGTTTTAATTTATGAAAACTGGCCCAAGTTCAAGGATGGTGGTGGAAGAAGAGTGTTTATGAAGGATTGGGAACCGTTTCATGGGAGAGAAGAATTGCTGGAGGGAATGCAATGTGGGCCTTTGATTGGCACCTGGAAGCCTCATAAAGTCTTGGAATACCCTGCTATAACTGGGAGGATTGTGACACTGAAGGACGTGGAATGCTATGATTTTCTGGAGAAACCGAGCGCAATGGAGAGAGGCGATTGGCCCAGAGTTTGTGAGAACAAGTTTTGTCCCAACTATGGAGCTCAGATTCCCAGCATTGTGATGTATGATGGCCAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.01

Weight (kDa)

5.19

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 116, 161, 320
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 167, 357
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 328
AoxI GGCC 4 cut(s) 56, 152, 284, 355
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 57, 152, 285
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 2 cut(s) 65, 347
BciT130I CCWGG 2 cut(s) 169, 359
Bme1390I CCNGG 2 cut(s) 169, 359
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 57, 152, 285
BmiI GGNNCC 2 cut(s) 108, 166
BmrFI CCNGG 2 cut(s) 169, 359
BmrI ACTGGG 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 155, 272
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 161, 320
Bse1I ACTGG 2 cut(s) 59, 211
Bse3DI GCAATG 2 cut(s) 152, 273
BseBI CCWGG 2 cut(s) 169, 359
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 116, 161, 320
BseMI GCAATG 2 cut(s) 152, 273
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 59, 211
BseYI CCCAGC 1 cut(s) 335
BshFI GGCC 4 cut(s) 58, 154, 286, 357
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 328
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 116, 161, 320
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 2 cut(s) 147, 242
BsnI GGCC 4 cut(s) 58, 154, 286, 357
Bsp1286I GDGCHC 1 cut(s) 328
BspANI GGCC 4 cut(s) 58, 154, 286, 357
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 108, 166
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 152, 273
BsrI ACTGG 2 cut(s) 59, 211
BssECI CCNNGG 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 169, 359
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 169, 359
BstSCI CCNGG 2 cut(s) 167, 357
BsuRI GGCC 4 cut(s) 58, 154, 286, 357
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 57, 152, 285
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 1 cut(s) 116
CviJI RGCY 6 cut(s) 58, 154, 175, 286, 326, 357
CviKI_1 RGCY 6 cut(s) 58, 154, 175, 286, 326, 357
DdeI CTNAG 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 167, 357
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 1 cut(s) 119
FaiI YATR 9 cut(s) 30, 48, 95, 117, 180, 203, 243, 321, 351
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 115
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 328
GlaI GCGC 1 cut(s) 265
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 2 cut(s) 155, 272
HaeIII GGCC 4 cut(s) 58, 154, 286, 357
HhaI GCGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 26, 91, 220
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 23, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 323
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 3 cut(s) 93, 96, 137
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 2 cut(s) 42, 128
MluNI TGGCCA 1 cut(s) 357
MnlI CCTC 5 cut(s) 23, 130, 186, 204, 269
Mox20I TGGCCA 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 111
MscI TGGCCA 1 cut(s) 357
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 169, 359
Mva1269I GAATGC 2 cut(s) 147, 242
MvaI CCWGG 2 cut(s) 169, 359
MwoI GCNNNNNNNGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 108, 166
NmuCI GTSAC 1 cut(s) 217
PctI GAATGC 2 cut(s) 147, 242
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 167, 357
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 167, 357
PspN4I GGNNCC 2 cut(s) 108, 166
PspPI GGNCC 3 cut(s) 57, 152, 285
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 1 cut(s) 41
Sau96I GGNCC 3 cut(s) 57, 152, 285
ScrFI CCNGG 2 cut(s) 169, 359
SduI GDGCHC 1 cut(s) 328
SetI ASST 3 cut(s) 170, 234, 328
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 2 cut(s) 42, 128
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 2 cut(s) 167, 357
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 42, 128
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 45, 63, 104, 110
TspRI CASTG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.