Rroxscaffold_5G00364450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018634
Physical Location & Seq
Forward (+)
45676805 .. 45677376
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364450.1

Sequence Viewer

Length: 510 bp
ATGAAGACGGGAAAAGATTTTCTGCTCTCGACATCTCACGTGATCAGCAGCTTCACCTTACCTTGCAACCTCCCTAATGTGTTGAATCATGCAAAACGTGAAGGGGTTTTAATTGCAGAGGATTGGCCCGAGTATAAGGTATTTGCTTCTCATCCAAATATGTTGGTTACTTTGATAGGATGGTGGAGGCAGGAGGGTATATATGAAGAATTGGTAGTTATGCTCGGGAAGGGAAGGTTTGGTGAAAGGAATGCAGACGGGGCCTCGATCGGGGCGTGTAAAGTGCACTCGGTCTTAAATGACCCGATAGCCTCAAGGAAAATCATCACTCAACAAGATGTTACTTACCGTAATTTGTTTGAGGAATTTTTTGCAAGATCACGGGGTATTGGCCGGGCGTTTGTCATCACGAGAGATTGTCCGTATCAACTCCTAGGACATGTTGACATACCCTACTTCGCCCACCGTGTGGCTTCTATGGCTCTTCTTTTGGGCATTGCGTCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

8.48

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 365
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 270, 469
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 288
Alw44I GTGCAC 1 cut(s) 284
Ama87I CYCGRG 2 cut(s) 128, 224
AoxI GGCC 3 cut(s) 125, 261, 391
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 365
AspA2I CCTAGG 1 cut(s) 433
AspS9I GGNCC 2 cut(s) 126, 261
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 46, 254
AvaI CYCGRG 2 cut(s) 128, 224
AvrII CCTAGG 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 288
BauI CACGAG 1 cut(s) 409
BbrPI CACGTG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 174
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 395
BfaI CTAG 1 cut(s) 434
BisI GCNGC 1 cut(s) 49
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 395
BmeT110I CYCGRG 2 cut(s) 128, 224
BmgT120I GGNCC 2 cut(s) 126, 261
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 469
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 151, 185
BseLI CCNNNNNNNGG 2 cut(s) 270, 469
BseMI GCAATG 1 cut(s) 495
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 127, 263, 393
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 2 cut(s) 128, 224
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 270, 469
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 3 cut(s) 127, 263, 393
BsoBI CYCGRG 2 cut(s) 128, 224
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 42, 267, 377
BspANI GGCC 3 cut(s) 127, 263, 393
BspLI GGNNCC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 3 cut(s) 42, 267, 377
BssSI CACGAG 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 350, 467
Bst6I CTCTTC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 40
BstF5I GGATG 2 cut(s) 151, 185
BstKTI GATC 3 cut(s) 45, 270, 380
BstMBI GATC 3 cut(s) 42, 267, 377
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 260, 479
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 3 cut(s) 127, 263, 393
BtsCI GGATG 2 cut(s) 151, 185
Cfr13I GGNCC 2 cut(s) 126, 261
CseI GACGC 1 cut(s) 489
CviAII CATG 2 cut(s) 89, 440
CviJI RGCY 7 cut(s) 51, 127, 263, 311, 393, 473, 482
CviKI_1 RGCY 7 cut(s) 51, 127, 263, 311, 393, 473, 482
DpnI GATC 3 cut(s) 44, 269, 379
DpnII GATC 3 cut(s) 42, 267, 377
DraIII CACNNNGTG 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 433
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 2 cut(s) 128, 224
EcoO109I RGGNCCY 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 2 cut(s) 92, 443
FatI CATG 2 cut(s) 88, 439
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 2 cut(s) 138, 192
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 3 cut(s) 127, 263, 393
HapII CCGG 1 cut(s) 394
HgaI GACGC 1 cut(s) 489
Hin1II CATG 2 cut(s) 92, 443
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 394
HphI GGTGA 2 cut(s) 46, 254
Hpy166II GTNNAC 2 cut(s) 286, 445
Hpy188III TCNNGA 4 cut(s) 28, 226, 409, 507
Hpy8I GTNNAC 2 cut(s) 286, 445
HpyAV CCTTC 3 cut(s) 95, 223, 228
HpyCH4III ACNGT 2 cut(s) 350, 467
HpyCH4IV ACGT 2 cut(s) 39, 97
HpyCH4V TGCA 6 cut(s) 66, 92, 116, 254, 286, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 479
HpySE526I ACGT 2 cut(s) 39, 97
Hsp92II CATG 2 cut(s) 92, 443
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 267, 377
LguI GCTCTTC 1 cut(s) 489
LpnPI CCDG 2 cut(s) 176, 407
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 39, 97
MaeIII GTNAC 2 cut(s) 166, 340
MalI GATC 3 cut(s) 44, 269, 379
MboI GATC 3 cut(s) 42, 267, 377
MboII GAAGA 3 cut(s) 16, 218, 476
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 111, 209, 352, 365
MnlI CCTC 7 cut(s) 80, 112, 180, 187, 274, 322, 355
MseI TTAA 2 cut(s) 110, 296
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 260, 479
NciI CCSGG 1 cut(s) 395
NdeII GATC 3 cut(s) 42, 267, 377
NlaIII CATG 2 cut(s) 92, 443
NlaIV GGNNCC 1 cut(s) 262
NspI RCATGY 1 cut(s) 443
PciI ACATGT 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 1 cut(s) 50
Ple19I CGATCG 1 cut(s) 270
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PscI ACATGT 1 cut(s) 439
PspCI CACGTG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 126, 261
PvuI CGATCG 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 110, 296
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 42, 267, 377
Sau96I GGNCC 2 cut(s) 126, 261
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 42, 53, 59, 64, 72, 100, 141, 239
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 4 cut(s) 111, 209, 352, 365
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 350, 467
TaiI ACGT 2 cut(s) 42, 100
TaqI TCGA 2 cut(s) 29, 266
TaqII GACCGA 1 cut(s) 280
TasI AATT 4 cut(s) 111, 209, 352, 365
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 110, 296
Tru9I TTAA 2 cut(s) 110, 296
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 17, 219
TspGWI ACGGA 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 469
VneI GTGCAC 1 cut(s) 284
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 443
XmaJI CCTAGG 1 cut(s) 433
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.