RLG00000007618

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018634
Physical Location & Seq
Reverse (-)
19057407 .. 19058096
690 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007618

Sequence Viewer

Length: 588 bp
ATGGGGAAGATTGTCCAGAACACCAAGGACAACATTCCCGATCCTTGGAGGCCGCAAGCCAACAAGAAGGGGACTTGTTTCGCGAACTGTCTCACCGAGATCCTGCAAGCCAAGGCGAGAATGAAGACGGGAAAAGATTTTCTGCTCTCGACATCTCACGTGATCAGCATCTTCACCTTACCTTGCAACCTCCCTAATGTGTTGAATCACGCAAAACGTGAAGGGGTTTTAATTGCAGAGGATTGGCCTGAGTATAAGGACGGTAGAGGCATGATGGTATATATGAATAATTGGCAGTTATGCTCAGGAAGGGAAGGTTTGGTGAAAGGAATGCAGACAGGGCCTCTGATCGGGGCGTGTAAAGTGCACTCGGTCTTAAATGACCCGATACCTCAAGGAAAATCATCACTCAGCAAGATGTTACTGACTGTAATTTGTTTCATGAATTTTTTGCAAGATCACGGGGATATTGGCGAGGCGTTTGTCATCACAGAGATTGTCCGTATCGACTCCGAGGACATGTTGACATACCCTACTTCTGCCCACTGTGTGGCTTCTATGGCTGTTCTTTGGGGCATTGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.54

Weight (kDa)

7.6

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 550
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 35, 94
AcsI RAATTY 1 cut(s) 445
AcvI CACGTG 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 45, 350, 550
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 1 cut(s) 95
Alw44I GTGCAC 1 cut(s) 365
AlwI GGATC 2 cut(s) 35, 94
AoxI GGCC 3 cut(s) 50, 245, 341
ApaLI GTGCAC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 85, 166, 334
BaeGI GKGCMC 1 cut(s) 369
BbrPI CACGTG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 1 cut(s) 268
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 341
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 24, 44, 111, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 350, 550
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 24, 44, 111, 513
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 45, 350, 550
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 3 cut(s) 240, 318, 424
BseSI GKGCMC 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 52, 247, 343
BsiHKAI GWGCWC 1 cut(s) 369
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 45, 350, 550
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 3 cut(s) 52, 247, 343
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 5 cut(s) 40, 99, 162, 348, 457
Bsp68I TCGCGA 1 cut(s) 83
BspACI CCGC 1 cut(s) 53
BspANI GGCC 3 cut(s) 52, 247, 343
BspCNI CTCAG 3 cut(s) 241, 317, 423
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 441
BspPI GGATC 2 cut(s) 35, 94
BsrDI GCAATG 1 cut(s) 576
BssECI CCNNGG 4 cut(s) 24, 44, 111, 513
BssMI GATC 5 cut(s) 40, 99, 162, 348, 457
BssT1I CCWWGG 3 cut(s) 24, 44, 111
Bst4CI ACNGT 4 cut(s) 89, 263, 430, 548
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 57, 108
BstDEI CTNAG 3 cut(s) 249, 304, 410
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 5 cut(s) 43, 102, 165, 351, 460
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 5 cut(s) 40, 99, 162, 348, 457
BstMWI GCNNNNNNNGC 2 cut(s) 340, 560
BstNSI RCATGY 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 3 cut(s) 52, 247, 343
BtsIMutI CAGTG 1 cut(s) 544
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 57, 108
CciI TCATGA 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 341
CviAII CATG 3 cut(s) 271, 442, 520
CviJI RGCY 7 cut(s) 52, 59, 110, 247, 343, 554, 563
CviKI_1 RGCY 7 cut(s) 52, 59, 110, 247, 343, 554, 563
DdeI CTNAG 3 cut(s) 249, 304, 410
DpnI GATC 5 cut(s) 42, 101, 164, 350, 459
DpnII GATC 5 cut(s) 40, 99, 162, 348, 457
DraIII CACNNNGTG 1 cut(s) 550
Eco130I CCWWGG 3 cut(s) 24, 44, 111
Eco72I CACGTG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 24, 44, 111
ErhI CCWWGG 3 cut(s) 24, 44, 111
FaeI CATG 3 cut(s) 274, 445, 523
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 270, 441, 519
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 3 cut(s) 52, 247, 343
Hin1II CATG 3 cut(s) 274, 445, 523
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 2 cut(s) 205, 509
HphI GGTGA 3 cut(s) 85, 166, 334
Hpy166II GTNNAC 2 cut(s) 367, 525
Hpy188I TCNGA 2 cut(s) 348, 514
Hpy188III TCNNGA 7 cut(s) 16, 38, 82, 148, 306, 442, 585
Hpy8I GTNNAC 2 cut(s) 367, 525
HpyAV CCTTC 4 cut(s) 61, 215, 303, 308
HpyCH4III ACNGT 4 cut(s) 89, 263, 430, 548
HpyCH4IV ACGT 2 cut(s) 159, 217
HpyCH4V TGCA 7 cut(s) 106, 186, 236, 334, 367, 454, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 560
HpyF3I CTNAG 3 cut(s) 249, 304, 410
HpySE526I ACGT 2 cut(s) 159, 217
Hsp92II CATG 3 cut(s) 274, 445, 523
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 5 cut(s) 40, 99, 162, 348, 457
LpnPI CCDG 5 cut(s) 29, 116, 261, 291, 324
LweI GCATC 1 cut(s) 177
MaeII ACGT 2 cut(s) 159, 217
MaeIII GTNAC 1 cut(s) 420
MalI GATC 5 cut(s) 42, 101, 164, 350, 459
MboI GATC 5 cut(s) 40, 99, 162, 348, 457
MboII GAAGA 3 cut(s) 19, 136, 163
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 231, 289, 432, 445
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 8 cut(s) 42, 200, 232, 260, 354, 402, 469, 508
MseI TTAA 2 cut(s) 230, 377
Mva1269I GAATGC 1 cut(s) 336
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 340, 560
NdeII GATC 5 cut(s) 40, 99, 162, 348, 457
NlaIII CATG 3 cut(s) 274, 445, 523
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 523
PagI TCATGA 1 cut(s) 441
PciI ACATGT 1 cut(s) 519
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 503
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 519
PspCI CACGTG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 99
RruI TCGCGA 1 cut(s) 83
SaqAI TTAA 2 cut(s) 230, 377
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 5 cut(s) 40, 99, 162, 348, 457
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 1 cut(s) 369
SetI ASST 7 cut(s) 162, 179, 184, 192, 220, 319, 394
SfaNI GCATC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 4 cut(s) 231, 289, 432, 445
SsiI CCGC 1 cut(s) 53
StyI CCWWGG 3 cut(s) 24, 44, 111
TaaI ACNGT 4 cut(s) 89, 263, 430, 548
TaiI ACGT 2 cut(s) 162, 220
TaqI TCGA 2 cut(s) 149, 507
TaqII GACCGA 1 cut(s) 361
TasI AATT 4 cut(s) 231, 289, 432, 445
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 230, 377
Tru9I TTAA 2 cut(s) 230, 377
TscAI CASTG 1 cut(s) 551
TspDTI ATGAA 4 cut(s) 137, 299, 430, 458
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 550
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.