Rmu_sc0003898.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003898.1
OG0018634
Physical Location & Seq
Forward (+)
11532 .. 14809
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003898.1_g000004.1.cds

Sequence Viewer

Length: 762 bp
atgacaacaacacaagtagggaacaacgcagatagcatgctttggcaacccaaaggaagagggacatgctgtagttactgcatcatagagcttctccaagccaagatcaaactcatcactggaatacacgttgaattgtctattcctcatgtgatcactagcttaagggggcgctcctacatggaaaacgtcctcaactttgtacaatatgaaggggttttaatttatgaagactggcccaggttcaaggatggtggtggaagaagagtgtttgtgaaggattgggaaccgtttcatgggagagaagaattggtggcgggaatgcaatgtgggcctttgattggcacctggaaggctcataaagtcttggaataccctgctataactgggaggattgtgacactgaaggatgtggaatgctatgattttctggagaaaccaagcgcaatggagagagccaattggcccagagtttgtgagaacaagttttgtcccaactatggagctcagattcccagtttttgctattactacagtttctatggttcacagcggaggcactgtgtaatcatcactgcatataaccaatgtattaaaaggaacaactggggaccaaagtgggggatgaatggttatggaaggtttgaaatgattgtgggagaggaagaggatcagcttgactggcctgaaaagtcaactggagttttagaattggagaggataggatatggggctgaaataaagaagatcacctggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

29.25

Weight (kDa)

7.51

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 344
AciI CCGC 2 cut(s) 317, 553
AclWI GGATC 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 4 cut(s) 296, 341, 500, 620
AflII CTTAAG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 3 cut(s) 134, 247, 647
AjnI CCWGG 3 cut(s) 239, 347, 752
AluBI AGCT 4 cut(s) 91, 162, 506, 676
AluI AGCT 4 cut(s) 91, 162, 506, 676
Alw21I GWGCWC 1 cut(s) 508
AlwI GGATC 1 cut(s) 678
AoxI GGCC 4 cut(s) 236, 332, 464, 683
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 174, 446
AspS9I GGNCC 4 cut(s) 237, 332, 465, 611
AsuHPI GGTGA 1 cut(s) 742
AvaII GGWCC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 508
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 3 cut(s) 241, 349, 754
BclI TGATCA 1 cut(s) 153
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 2 cut(s) 70, 532
BfoI RGCGCY 1 cut(s) 175
BfrI CTTAAG 1 cut(s) 163
Bme1390I CCNGG 3 cut(s) 241, 349, 754
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 4 cut(s) 237, 332, 465, 611
BmiI GGNNCC 3 cut(s) 288, 346, 612
BmrFI CCNGG 3 cut(s) 241, 349, 754
BmrI ACTGGG 3 cut(s) 396, 510, 616
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 3 cut(s) 396, 510, 616
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 452, 720
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 341, 500, 620
Bse1I ACTGG 7 cut(s) 124, 239, 391, 516, 611, 686, 703
Bse3DI GCAATG 2 cut(s) 332, 453
BseBI CCWGG 3 cut(s) 241, 349, 754
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 4 cut(s) 256, 415, 630, 762
BseLI CCNNNNNNNGG 4 cut(s) 296, 341, 500, 620
BseMI GCAATG 2 cut(s) 332, 453
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 7 cut(s) 124, 239, 391, 516, 611, 686, 703
BshFI GGCC 4 cut(s) 238, 334, 466, 685
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 508
BslFI GGGAC 3 cut(s) 76, 477, 624
BslI CCNNNNNNNGG 4 cut(s) 296, 341, 500, 620
BsmFI GGGAC 3 cut(s) 76, 477, 624
BsmI GAATGC 2 cut(s) 327, 422
BsnI GGCC 4 cut(s) 238, 334, 466, 685
Bsp1286I GDGCHC 1 cut(s) 508
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 4 cut(s) 105, 153, 670, 747
BspACI CCGC 2 cut(s) 317, 553
BspANI GGCC 4 cut(s) 238, 334, 466, 685
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 288, 346, 612
BspPI GGATC 1 cut(s) 678
BspT107I GGYRCC 1 cut(s) 344
BspTI CTTAAG 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 332, 453
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 7 cut(s) 124, 239, 391, 516, 611, 686, 703
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 4 cut(s) 105, 153, 670, 747
Bst2UI CCWGG 3 cut(s) 241, 349, 754
Bst4CI ACNGT 3 cut(s) 291, 536, 563
Bst6I CTCTTC 3 cut(s) 52, 259, 660
BstAFI CTTAAG 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 4 cut(s) 256, 415, 630, 762
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 2 cut(s) 174, 446
BstKTI GATC 4 cut(s) 108, 156, 673, 750
BstMBI GATC 4 cut(s) 105, 153, 670, 747
BstMWI GCNNNNNNNGC 2 cut(s) 331, 682
BstNI CCWGG 3 cut(s) 241, 349, 754
BstNSI RCATGY 2 cut(s) 40, 69
BstSCI CCNGG 3 cut(s) 239, 347, 752
BstSFI CTRYAG 2 cut(s) 70, 532
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 4 cut(s) 238, 334, 466, 685
BtsCI GGATG 4 cut(s) 256, 415, 630, 762
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 4 cut(s) 117, 401, 559, 573
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 2 cut(s) 174, 446
Cfr13I GGNCC 4 cut(s) 237, 332, 465, 611
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 37, 66, 149, 181, 296
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 507
DpnI GATC 4 cut(s) 107, 155, 672, 749
DpnII GATC 4 cut(s) 105, 153, 670, 747
Eam1104I CTCTTC 3 cut(s) 52, 259, 660
EarI CTCTTC 3 cut(s) 52, 259, 660
Ecl136II GAGCTC 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 239, 347, 752
EcoT38I GRGCYC 1 cut(s) 508
FaeI CATG 5 cut(s) 40, 69, 152, 184, 299
FaqI GGGAC 3 cut(s) 76, 477, 624
FatI CATG 5 cut(s) 36, 65, 148, 180, 295
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 153
FokI GGATG 3 cut(s) 263, 422, 637
FriOI GRGCYC 1 cut(s) 508
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 173, 445
GsuI CTGGAG 2 cut(s) 452, 720
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 4 cut(s) 238, 334, 466, 685
HhaI GCGC 2 cut(s) 174, 446
Hin1II CATG 5 cut(s) 40, 69, 152, 184, 299
Hin6I GCGC 2 cut(s) 172, 444
HinP1I GCGC 2 cut(s) 172, 444
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 1 cut(s) 511
HphI GGTGA 1 cut(s) 742
Hpy166II GTNNAC 2 cut(s) 548, 696
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 2 cut(s) 548, 696
HpyAV CCTTC 5 cut(s) 206, 271, 346, 400, 633
HpyCH4III ACNGT 3 cut(s) 291, 536, 563
HpyCH4IV ACGT 2 cut(s) 129, 189
HpyCH4V TGCA 3 cut(s) 81, 325, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 682
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 2 cut(s) 129, 189
Hsp92II CATG 5 cut(s) 40, 69, 152, 184, 299
HspAI GCGC 2 cut(s) 172, 444
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 4 cut(s) 105, 153, 670, 747
LmnI GCTCC 2 cut(s) 179, 503
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 129, 189
MaeIII GTNAC 2 cut(s) 74, 397
MalI GATC 4 cut(s) 107, 155, 672, 749
MboI GATC 4 cut(s) 105, 153, 670, 747
MboII GAAGA 7 cut(s) 69, 242, 273, 276, 317, 677, 757
MfeI CAATTG 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 5 cut(s) 134, 222, 308, 460, 710
MnlI CCTC 8 cut(s) 53, 156, 203, 384, 549, 655, 661, 711
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 164, 221, 594
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 553
MspCI CTTAAG 1 cut(s) 163
MspR9I CCNGG 3 cut(s) 241, 349, 754
MunI CAATTG 1 cut(s) 460
Mva1269I GAATGC 2 cut(s) 327, 422
MvaI CCWGG 3 cut(s) 241, 349, 754
MwoI GCNNNNNNNGC 2 cut(s) 331, 682
NdeII GATC 4 cut(s) 105, 153, 670, 747
NlaIII CATG 5 cut(s) 40, 69, 152, 184, 299
NlaIV GGNNCC 3 cut(s) 288, 346, 612
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 2 cut(s) 40, 69
PaeI GCATGC 1 cut(s) 40
PctI GAATGC 2 cut(s) 327, 422
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 508
Psp6I CCWGG 3 cut(s) 239, 347, 752
PspGI CCWGG 3 cut(s) 239, 347, 752
PspN4I GGNNCC 3 cut(s) 288, 346, 612
PspPI GGNCC 4 cut(s) 237, 332, 465, 611
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 1 cut(s) 508
SaqAI TTAA 3 cut(s) 164, 221, 594
Sau3AI GATC 4 cut(s) 105, 153, 670, 747
Sau96I GGNCC 4 cut(s) 237, 332, 465, 611
ScrFI CCNGG 3 cut(s) 241, 349, 754
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 2 cut(s) 70, 532
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SphI GCATGC 1 cut(s) 40
Sse9I AATT 5 cut(s) 134, 222, 308, 460, 710
SsiI CCGC 2 cut(s) 317, 553
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 508
StyD4I CCNGG 3 cut(s) 239, 347, 752
TaaI ACNGT 3 cut(s) 291, 536, 563
TaiI ACGT 2 cut(s) 132, 192
TasI AATT 5 cut(s) 134, 222, 308, 460, 710
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 3 cut(s) 164, 221, 594
Tru9I TTAA 3 cut(s) 164, 221, 594
TscAI CASTG 4 cut(s) 124, 408, 566, 580
TseFI GTSAC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 4 cut(s) 225, 243, 284, 641
TspRI CASTG 4 cut(s) 124, 408, 566, 580
Vha464I CTTAAG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 611
XceI RCATGY 2 cut(s) 40, 69
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.