Rh6DG045400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018634
Physical Location & Seq
Forward (+)
4800044 .. 4803765
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG045400.1

Sequence Viewer

Length: 324 bp
ATGGAAAATGTCCTCAACTTTGCACAATATGAAGGGGTTTTAATTCATGAAGACTGGCCCAGGTTCAAGGATGGTGGTGGAAGAAGAGTGTTTGTGAAGGATTGGGAACCGTTTCATGGGAGAGAAGAATTGGTGGCGGGAATGCAATGTGGGCCTTTGATTGGCACCTGGAAGCCTCATAAAGTCTTAGAATACCCTGCTATAACTGGGAGGATTGTGACACTGAAGGACGTGGAATGCTACGATTTTCTGGAGAAACAGAGCGCAATGGAGAGAGAAAAGGAGTGTAAGAGCGGTAACAAGCACACAGAAAACGGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.35

Weight (kDa)

5.8

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 164, 317
AccBSI CCGCTC 1 cut(s) 294
AciI CCGC 2 cut(s) 137, 294
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 2 cut(s) 116, 161
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 59, 167
AoxI GGCC 2 cut(s) 56, 152
Asp700I GAANNNNTTC 1 cut(s) 111
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 57, 152
BanI GGYRCC 2 cut(s) 164, 317
BbsI GAAGAC 1 cut(s) 57
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 61, 169
Bme1390I CCNGG 2 cut(s) 61, 169
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 57, 152
BmiI GGNNCC 3 cut(s) 108, 166, 319
BmrFI CCNGG 2 cut(s) 61, 169
BmrI ACTGGG 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 161
Bse1I ACTGG 2 cut(s) 59, 211
Bse3DI GCAATG 2 cut(s) 152, 273
BseBI CCWGG 2 cut(s) 61, 169
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 116, 161
BseMI GCAATG 2 cut(s) 152, 273
BseNI ACTGG 2 cut(s) 59, 211
BshFI GGCC 2 cut(s) 58, 154
BshNI GGYRCC 2 cut(s) 164, 317
BslI CCNNNNNNNGG 2 cut(s) 116, 161
BsmI GAATGC 2 cut(s) 147, 242
BsnI GGCC 2 cut(s) 58, 154
BspACI CCGC 2 cut(s) 137, 294
BspANI GGCC 2 cut(s) 58, 154
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 108, 166, 319
BspT107I GGYRCC 2 cut(s) 164, 317
BsrBI CCGCTC 1 cut(s) 294
BsrDI GCAATG 2 cut(s) 152, 273
BsrI ACTGG 2 cut(s) 59, 211
BssECI CCNNGG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 61, 169
Bst4CI ACNGT 2 cut(s) 111, 317
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 61, 169
BstSCI CCNGG 2 cut(s) 59, 167
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 58, 154
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 57, 152
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 2 cut(s) 47, 116
CviJI RGCY 3 cut(s) 58, 154, 175
CviKI_1 RGCY 3 cut(s) 58, 154, 175
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 59, 167
FaeI CATG 2 cut(s) 50, 119
FaiI YATR 5 cut(s) 30, 48, 117, 180, 203
FatI CATG 2 cut(s) 46, 115
FauI CCCGC 1 cut(s) 130
FokI GGATG 1 cut(s) 83
GlaI GCGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 58, 154
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 50, 119
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 47, 251
HpyAV CCTTC 3 cut(s) 26, 91, 220
HpyCH4III ACNGT 2 cut(s) 111, 317
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 23, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 50, 119
HspAI GCGC 1 cut(s) 264
KpnI GGTACC 1 cut(s) 321
LpnPI CCDG 8 cut(s) 40, 46, 73, 154, 181, 192, 210, 236
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 217, 296
MbiI CCGCTC 1 cut(s) 294
MboII GAAGA 4 cut(s) 62, 93, 96, 137
MluCI AATT 2 cut(s) 42, 128
MnlI CCTC 3 cut(s) 23, 186, 204
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 61, 169
Mva1269I GAATGC 2 cut(s) 147, 242
MvaI CCWGG 2 cut(s) 61, 169
MwoI GCNNNNNNNGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 50, 119
NlaIV GGNNCC 3 cut(s) 108, 166, 319
NmuCI GTSAC 1 cut(s) 217
PagI TCATGA 1 cut(s) 46
PctI GAATGC 2 cut(s) 147, 242
PdmI GAANNNNTTC 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 59, 167
PspGI CCWGG 2 cut(s) 59, 167
PspN4I GGNNCC 3 cut(s) 108, 166, 319
PspPI GGNCC 2 cut(s) 57, 152
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 41
Sau96I GGNCC 2 cut(s) 57, 152
ScrFI CCNGG 2 cut(s) 61, 169
SetI ASST 4 cut(s) 65, 170, 234, 323
Sse9I AATT 2 cut(s) 42, 128
SsiI CCGC 2 cut(s) 137, 294
StyD4I CCNGG 2 cut(s) 59, 167
TaaI ACNGT 2 cut(s) 111, 317
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 42, 128
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 35, 45, 63, 104
TspRI CASTG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.