Rh5BG186200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018634
Physical Location & Seq
Reverse (-)
20466314 .. 20466985
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG186200.1

Sequence Viewer

Length: 672 bp
ATGGGGAAGATTGTCCAGAACACCAAGGACAACATTCCCGATCCTTGGAGGCCTCAAGCCAACGAGAAGGGGACTTGTTTCGCGAACTGTCTCACCGAGATCCTGCAAGCCAAGGCGAGAATGAAGACGGGAAAAGATTTTCTGCTCTCGACATCTCACGTGATCAGCAGCTTCACCTTACCTTGCAACCTCGCTAATGTGTTGAATCATGCAATACGTGAAGGGGTTTTAATTGCAGAGGATTGGCCTGAGTATAAGGATGGTGGAGGTAGGAGGGTATATATCATGAAGAATTGGCAGTTATGCTCAGGAAGGGAAGGTTTGGTGAAAGGAATACAGACAGGGCTTCTGATCGGGGCGTGTAAGGCGCACTCGGTCTTAGATGACCCAATAGTCTCAAGGAAAATCATCACTCAGCAAGATGTTACTGACTGCAATTTGTTTGAGGAATTTGATGCGAGATCACTGGGCTATTGGCCAGGCGTTTGTCAACACAGACATTGTCCGTATCGACTCCGAGGAGAGGGTTATTGGGAGCAACATGTTGACATACCCTACTTCTGCCCACTGTGTGGCTTCTATGGCTCTTCTTTGGGGCATTGCGTCATCTTGACTGGCTACAACAGAGAGGAAGACATTGTTCCTCCCTATTGGGAGTTCAAAAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

6.64

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 572
AccII CGCG 1 cut(s) 83
AclWI GGATC 2 cut(s) 35, 94
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 2 cut(s) 449, 664
AcvI CACGTG 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 572
AfiI CCNNNNNNNGG 3 cut(s) 45, 523, 572
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 2 cut(s) 205, 661
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 95, 400
AlwI GGATC 2 cut(s) 35, 94
AoxI GGCC 3 cut(s) 50, 245, 476
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 449, 664
AspLEI GCGC 1 cut(s) 370
AsuHPI GGTGA 3 cut(s) 85, 166, 337
BalI TGGCCA 1 cut(s) 478
BbrPI CACGTG 1 cut(s) 160
BbsI GAAGAC 2 cut(s) 131, 639
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 95, 400
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 480
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 2 cut(s) 131, 639
Bpu10I CCTNAGC 1 cut(s) 307
BpuEI CTTGAG 2 cut(s) 39, 382
BsaAI YACGTR 2 cut(s) 160, 218
BsaJI CCNNGG 4 cut(s) 24, 44, 111, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 523, 572
Bse1I ACTGG 2 cut(s) 471, 619
Bse3DI GCAATG 1 cut(s) 598
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 4 cut(s) 24, 44, 111, 517
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 45, 523, 572
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 3 cut(s) 240, 321, 428
BseNI ACTGG 2 cut(s) 471, 619
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 3 cut(s) 52, 247, 478
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 45, 523, 572
BsmAI GTCTC 2 cut(s) 95, 400
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 3 cut(s) 52, 247, 478
Bsp143I GATC 5 cut(s) 40, 99, 162, 351, 461
Bsp68I TCGCGA 1 cut(s) 83
BspANI GGCC 3 cut(s) 52, 247, 478
BspCNI CTCAG 3 cut(s) 241, 320, 427
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 285
BspPI GGATC 2 cut(s) 35, 94
BspQI GCTCTTC 1 cut(s) 592
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 2 cut(s) 471, 619
BssECI CCNNGG 4 cut(s) 24, 44, 111, 517
BssMI GATC 5 cut(s) 40, 99, 162, 351, 461
BssT1I CCWWGG 3 cut(s) 24, 44, 111
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 89, 570
Bst6I CTCTTC 1 cut(s) 592
BstBAI YACGTR 2 cut(s) 160, 218
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 249, 307, 379, 414
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 5 cut(s) 43, 102, 165, 354, 464
BstMAI GTCTC 2 cut(s) 95, 400
BstMBI GATC 5 cut(s) 40, 99, 162, 351, 461
BstMWI GCNNNNNNNGC 2 cut(s) 365, 582
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 478
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 131, 639
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 3 cut(s) 52, 247, 478
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 464, 566
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 285
CfoI GCGC 1 cut(s) 370
CseI GACGC 1 cut(s) 592
CviAII CATG 3 cut(s) 209, 286, 542
DdeI CTNAG 4 cut(s) 249, 307, 379, 414
DpnI GATC 5 cut(s) 42, 101, 164, 353, 463
DpnII GATC 5 cut(s) 40, 99, 162, 351, 461
DraIII CACNNNGTG 1 cut(s) 572
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
Eco130I CCWWGG 3 cut(s) 24, 44, 111
Eco147I AGGCCT 1 cut(s) 52
Eco72I CACGTG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 3 cut(s) 24, 44, 111
ErhI CCWWGG 3 cut(s) 24, 44, 111
FaeI CATG 3 cut(s) 212, 289, 545
FaiI YATR 9 cut(s) 210, 255, 280, 282, 287, 304, 543, 551, 582
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 208, 285, 541
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 3 cut(s) 52, 247, 478
HgaI GACGC 1 cut(s) 592
HhaI GCGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 212, 289, 545
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 2 cut(s) 491, 547
HindII GTYRAC 2 cut(s) 491, 547
HinfI GANTC 2 cut(s) 205, 513
HphI GGTGA 3 cut(s) 85, 166, 337
Hpy166II GTNNAC 2 cut(s) 491, 547
Hpy188I TCNGA 2 cut(s) 351, 518
Hpy188III TCNNGA 8 cut(s) 16, 38, 82, 148, 286, 309, 610, 669
Hpy8I GTNNAC 2 cut(s) 491, 547
HpyAV CCTTC 4 cut(s) 61, 215, 306, 311
HpyCH4III ACNGT 2 cut(s) 89, 570
HpyCH4IV ACGT 2 cut(s) 159, 217
HpyCH4V TGCA 5 cut(s) 106, 186, 212, 236, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 582
HpyF3I CTNAG 4 cut(s) 249, 307, 379, 414
HpySE526I ACGT 2 cut(s) 159, 217
Hsp92II CATG 3 cut(s) 212, 289, 545
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 5 cut(s) 40, 99, 162, 351, 461
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 9 cut(s) 29, 116, 261, 294, 327, 452, 465, 492, 600
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 445
MaeII ACGT 2 cut(s) 159, 217
MaeIII GTNAC 1 cut(s) 424
MalI GATC 5 cut(s) 42, 101, 164, 353, 463
MboI GATC 5 cut(s) 40, 99, 162, 351, 461
MboII GAAGA 5 cut(s) 19, 136, 301, 579, 644
MflI RGATCY 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 478
MluCI AATT 5 cut(s) 231, 292, 436, 449, 664
MluNI TGGCCA 1 cut(s) 478
MlyI GAGTC 1 cut(s) 507
Mox20I TGGCCA 1 cut(s) 478
MscI TGGCCA 1 cut(s) 478
MseI TTAA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 365, 582
NdeII GATC 5 cut(s) 40, 99, 162, 351, 461
NlaIII CATG 3 cut(s) 212, 289, 545
NruI TCGCGA 1 cut(s) 83
NspI RCATGY 1 cut(s) 545
PagI TCATGA 1 cut(s) 285
PceI AGGCCT 1 cut(s) 52
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 501
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 507
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 1 cut(s) 507
Ppu21I YACGTR 2 cut(s) 160, 218
PscI ACATGT 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 478
PspCI CACGTG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 478
PsuI RGATCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 501
RruI TCGCGA 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 5 cut(s) 40, 99, 162, 351, 461
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 1 cut(s) 480
SetI ASST 8 cut(s) 162, 173, 179, 184, 192, 220, 271, 322
SfaNI GCATC 1 cut(s) 445
SmlI CTYRAG 2 cut(s) 54, 397
SmoI CTYRAG 2 cut(s) 54, 397
Sse9I AATT 5 cut(s) 231, 292, 436, 449, 664
SseBI AGGCCT 1 cut(s) 52
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 3 cut(s) 24, 44, 111
TaaI ACNGT 2 cut(s) 89, 570
TaiI ACGT 2 cut(s) 162, 220
TaqI TCGA 2 cut(s) 149, 511
TaqII GACCGA 1 cut(s) 364
TasI AATT 5 cut(s) 231, 292, 436, 449, 664
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 471, 573
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 137, 302
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 2 cut(s) 471, 573
Tth111I GACNNNGTC 1 cut(s) 501
Van91I CCANNNNNTGG 1 cut(s) 572
XapI RAATTY 2 cut(s) 449, 664
XceI RCATGY 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.