Rh6CG049500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018634
Physical Location & Seq
Forward (+)
4880404 .. 4888255
7852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG049500.1

Sequence Viewer

Length: 384 bp
ATGGAAAATGTCCTCAACTTTGCACAATATGAAGGGGTTTTAATTCATGAAGACTGGCCCAGGTTCAAGGATGGTGGTGGAAGAAGAGTGTTTGTGAAGGATTGGGAACCGTTTCATGGGAGAGAAGAATTGGTGGCGGGAATGCAATGTGGGCCTTTGATTGGCACCTGGAAGCCTCATAAAGTCTTAGAATACCCTGCTATAACTGGGAGGATTGTGACACTGAAGGACGTGGAATGCTACGATTTTCTGGAGAAACAGAGCGCAATGGAGAGAGAGGAAAGCTTTACTTCAACGCTTCCTGGCAAAGAGGAAGGATATGATCAACAACATGTAGCAACTGAGCAGCCCCAATTCTTCAGGCCCTGCAAAACCAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.68

Weight (kDa)

5.22

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 1 cut(s) 137
AcuI CTGAAG 2 cut(s) 245, 343
AfiI CCNNNNNNNGG 2 cut(s) 116, 161
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 67, 294
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 3 cut(s) 59, 167, 301
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 366
AoxI GGCC 3 cut(s) 56, 152, 362
ApeKI GCWGC 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 57, 152, 363
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 3 cut(s) 61, 169, 303
BclI TGATCA 1 cut(s) 322
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 3 cut(s) 61, 169, 303
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 57, 152, 363
BmiI GGNNCC 2 cut(s) 108, 166
BmrFI CCNGG 3 cut(s) 61, 169, 303
BmrI ACTGGG 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 161
Bse1I ACTGG 2 cut(s) 59, 211
Bse3DI GCAATG 2 cut(s) 152, 273
BseBI CCWGG 3 cut(s) 61, 169, 303
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 116, 161
BseMI GCAATG 2 cut(s) 152, 273
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 59, 211
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 3 cut(s) 58, 154, 364
BshNI GGYRCC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 116, 161
BsmI GAATGC 2 cut(s) 147, 242
BsnI GGCC 3 cut(s) 58, 154, 364
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 1 cut(s) 137
BspANI GGCC 3 cut(s) 58, 154, 364
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 108, 166
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 152, 273
BsrI ACTGG 2 cut(s) 59, 211
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 1 cut(s) 322
Bst2UI CCWGG 3 cut(s) 61, 169, 303
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 187, 342
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 2 cut(s) 151, 375
BstNI CCWGG 3 cut(s) 61, 169, 303
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 59, 167, 301
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 3 cut(s) 58, 154, 364
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 366
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 57, 152, 363
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 3 cut(s) 47, 116, 332
CviJI RGCY 6 cut(s) 58, 154, 175, 285, 349, 364
CviKI_1 RGCY 6 cut(s) 58, 154, 175, 285, 349, 364
DdeI CTNAG 2 cut(s) 187, 342
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 245, 343
EcoO109I RGGNCCY 1 cut(s) 363
EcoRII CCWGG 3 cut(s) 59, 167, 301
FaeI CATG 3 cut(s) 50, 119, 335
FaiI YATR 7 cut(s) 30, 48, 117, 180, 203, 321, 333
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FatI CATG 3 cut(s) 46, 115, 331
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 347
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 58, 154, 364
HhaI GCGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 50, 119, 335
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 283
Hpy188III TCNNGA 2 cut(s) 47, 251
HpyAV CCTTC 4 cut(s) 26, 91, 220, 308
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 23, 145, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 375
HpyF3I CTNAG 2 cut(s) 187, 342
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 3 cut(s) 50, 119, 335
HspAI GCGC 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 322
Lsp1109I GCAGC 1 cut(s) 358
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 5 cut(s) 62, 93, 96, 137, 349
MluCI AATT 3 cut(s) 42, 128, 353
MnlI CCTC 5 cut(s) 23, 186, 204, 271, 304
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 3 cut(s) 61, 169, 303
Mva1269I GAATGC 2 cut(s) 147, 242
MvaI CCWGG 3 cut(s) 61, 169, 303
MwoI GCNNNNNNNGC 2 cut(s) 151, 375
NdeII GATC 1 cut(s) 322
NlaIII CATG 3 cut(s) 50, 119, 335
NlaIV GGNNCC 2 cut(s) 108, 166
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 46
PciI ACATGT 1 cut(s) 331
PctI GAATGC 2 cut(s) 147, 242
PdmI GAANNNNTTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 348
PscI ACATGT 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 59, 167, 301
PspGI CCWGG 3 cut(s) 59, 167, 301
PspN4I GGNNCC 2 cut(s) 108, 166
PspPI GGNCC 3 cut(s) 57, 152, 363
PstNI CAGNNNCTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 3 cut(s) 57, 152, 363
ScrFI CCNGG 3 cut(s) 61, 169, 303
SetI ASST 4 cut(s) 65, 170, 234, 287
Sse9I AATT 3 cut(s) 42, 128, 353
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 59, 167, 301
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 234
TasI AATT 3 cut(s) 42, 128, 353
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 4 cut(s) 35, 45, 63, 104
TspRI CASTG 1 cut(s) 228
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.