RchiOBHm_Chr6g0274291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014858
Physical Location & Seq
Reverse (-)
35723657 .. 35725860
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24605

Sequence Viewer

Length: 465 bp
ATGGCCAAGAGAAGCGCCTCTCCTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGGGATTCGACGTTTGATAAAATTCGAAGTAATATTTCGAGGCTTTAGATACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGGATACAATTAAAATTTTGAGTCGTTTGTTACACCGTTCTTTGGCAGAGGATTATAGTAGTTGGTGTGGATTAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCGTACTAGGTCTTACAATAAATTTAGTTGGGGTCTTACTATCTTGGCTATCTGGGCTTCACTTCAGAATGCAGTGGTATTTCATGACTTCATGATTGCTACTACTGGGAAGTACTGGCAGTGCTGCTCAAAACCAGCATATGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.11

Weight (kDa)

9.3

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 80, 189, 260, 305, 335
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 319, 428
AfiI CCNNNNNNNGG 2 cut(s) 175, 217
AgsI TTSAA 1 cut(s) 116
AjiI CACGTC 1 cut(s) 276
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 438
ApoI RAATTY 5 cut(s) 80, 189, 260, 305, 335
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 269
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 425
BciVI GTATCC 1 cut(s) 172
BfaI CTAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
BmcAI AGTACT 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 217
Bse1I ACTGG 2 cut(s) 424, 434
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 175, 217
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 15, 165
BseNI ACTGG 2 cut(s) 424, 434
BseXI GCAGC 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 175, 217
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 280
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 16, 166
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 2 cut(s) 397, 405
BspLI GGNNCC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 424, 434
Bst4CI ACNGT 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 24, 174
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 368, 458
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 425
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 2 cut(s) 393, 440
BtsIMutI CAGTG 3 cut(s) 171, 393, 440
BtuMI TCGCGA 1 cut(s) 280
CciI TCATGA 2 cut(s) 397, 405
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 318, 427
CviAII CATG 2 cut(s) 398, 406
CviJI RGCY 5 cut(s) 5, 102, 121, 362, 371
CviKI_1 RGCY 5 cut(s) 5, 102, 121, 362, 371
CviQI GTAC 2 cut(s) 318, 427
DdeI CTNAG 2 cut(s) 24, 174
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 362
FaeI CATG 2 cut(s) 401, 409
FaiI YATR 7 cut(s) 231, 294, 399, 407, 454, 456, 463
FatI CATG 2 cut(s) 397, 405
FauNDI CATATG 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 1 cut(s) 321
GlaI GCGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 439
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 401, 409
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 64, 196
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 311, 381
Hpy188III TCNNGA 4 cut(s) 23, 279, 398, 406
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 72, 280
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 70, 275
HpyCH4V TGCA 3 cut(s) 39, 386, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 458
HpyF3I CTNAG 2 cut(s) 24, 174
HpySE526I ACGT 2 cut(s) 70, 275
Hsp92II CATG 2 cut(s) 401, 409
HspAI GCGC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 36, 44, 107, 153, 352, 405, 415
Lsp1109I GCAGC 1 cut(s) 425
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 70, 275
MaeIII GTNAC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 80, 131, 183, 189, 260, 289, 305, 335
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 5 cut(s) 28, 92, 147, 169, 217
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 186, 303
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 388
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 368, 458
NdeI CATATG 1 cut(s) 454
NlaIII CATG 2 cut(s) 401, 409
NlaIV GGNNCC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 280
NspV TTCGAA 1 cut(s) 84
PagI TCATGA 2 cut(s) 397, 405
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 127
RruI TCGCGA 1 cut(s) 280
RsaI GTAC 2 cut(s) 319, 428
RsaNI GTAC 2 cut(s) 318, 427
SaqAI TTAA 2 cut(s) 186, 303
SatI GCNGC 1 cut(s) 439
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 1 cut(s) 205
SetI ASST 4 cut(s) 73, 259, 278, 326
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 127
Sse9I AATT 8 cut(s) 80, 131, 183, 189, 260, 289, 305, 335
SspI AATATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 73, 278
TaqI TCGA 3 cut(s) 67, 84, 97
TasI AATT 8 cut(s) 80, 131, 183, 189, 260, 289, 305, 335
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 186, 303
Tru9I TTAA 2 cut(s) 186, 303
TscAI CASTG 3 cut(s) 178, 393, 440
TseI GCWGC 1 cut(s) 438
TspDTI ATGAA 4 cut(s) 143, 254, 386, 394
TspRI CASTG 3 cut(s) 178, 393, 440
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 5 cut(s) 80, 189, 260, 305, 335
XspI CTAG 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.