Rh1CG136300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
29886545 .. 29887185
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG136300.1

Sequence Viewer

Length: 261 bp
ATGGCCAAGAGAAGCGCCTCTCCTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGGGATTCGACGTTCGATAAAATTCGAAGTAATATTTCAAGGCTTTAGGTACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGGATACAATTAAAATTTTGAGCCGTTTGTTACACCATTCTTTGGCAGAGGATTGTAGTAGTTGGGTGCTCAAATTGATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.13

Weight (kDa)

8.74

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 80, 189
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 175, 217
AgsI TTSAA 2 cut(s) 98, 116
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
Alw21I GWGCWC 1 cut(s) 246
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 80, 189
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 217
Bse3DI GCAATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 175, 217
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 15, 165
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 246
BslI CCNNNNNNNGG 2 cut(s) 175, 217
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 246
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 16, 166
BspLI GGNNCC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 24, 174
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 4 cut(s) 5, 102, 121, 198
CviKI_1 RGCY 4 cut(s) 5, 102, 121, 198
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 24, 174
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 127
GlaI GCGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 24, 174
HpySE526I ACGT 1 cut(s) 70
HspAI GCGC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 36, 44, 107, 153
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 80, 131, 183, 189, 248
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 28, 147, 169, 217
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 186, 259
Msp20I TGGCCA 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 84
PfeI GAWTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 127
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 2 cut(s) 186, 259
Sau96I GGNCC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 246
SetI ASST 2 cut(s) 73, 110
SfuI TTCGAA 1 cut(s) 84
SgeI CNNG 7 cut(s) 19, 35, 71, 110, 134, 152, 176
SinI GGWCC 1 cut(s) 127
Sse9I AATT 5 cut(s) 80, 131, 183, 189, 248
SspI AATATT 1 cut(s) 93
TaiI ACGT 1 cut(s) 73
TaqI TCGA 3 cut(s) 67, 74, 84
TasI AATT 5 cut(s) 80, 131, 183, 189, 248
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 186, 259
Tru9I TTAA 2 cut(s) 186, 259
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 80, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.