Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014858

Physical Location & Seq

Genomic Coordinates Reverse (-)

40507055 .. 40508543

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTGATCCTTTGGTTGCTAGGTTCCAGTTTTTGCCAAGTGATGTTATTGAGCTTCAGTATTCAATTCCTGGTTGTGAAGTTTGTTTTCTTCATTCCTATAATGATTTCCAGATGCTGTCTTGTGGTGCTAGGAAGTTTCATGGTGCAGCTAAGTTCCGTGAGAAGCTTAGGAAGTATGCATTTTGTTCAGTGGATAGTTGTTCGGGGTTCTTGATGAAGACGATTATTTGGACGTTTCATGGTTCAGCTAAGTTCCGTGAGAAGCTTAGGAAGTATGCAATTGCAGTTGGTTTTGAGTTTGTGTTTTTGAGAAATGATTTGGACCGTATTTATGCAATTTGTTCGAATGTTGGAACCGAAAGTTATGATTGGCATCTTCGCGCTCTTGCATCATCTGCCAATGGTTGCCTTTATATAAGAGAGTTGAATAATGTTGTCAAGACATGCATTGCTGCCGATGTTAGCCATAATCTTTCATTGAAGCCAAGGGAAATTATGAGTAGGTTCAAGTCAACATATAGGTTTGATATTTCCTGCAAGGTTGTTTTGAAAGCAAAGCAAATGGCTCAGGAAAGGATTTATGGTTTCGATGTAGATTCATTTAGCATGTTACCTTGGTATAAGGAAGCTATTTTGGAGAGTAATCCAGGCTCTTCTTTTGTGTTGGAAGTTGACCAGTCTACTAATCGTTTTGAGAGGCTTTTTGTAGCTTATGGAGGTTGTGTTGAAGGCTTCAAATTCTTTTGCCGGTGTTGTATGTCGATGGCACATTTGGTAAAAGCATTTACAAGGGTCAGATTCTTTGTACAACTGAAAGGAATGGAAATCAAGGTTTCTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

282

Amino Acids

32.45

Weight (kDa)

9.06

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014858)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0274291
rosa_roxburghii	Rroxscaffold_3G00256910
rosa_rugosa	Rorug02G0329500 Rorug02G0329600 Rorug02G0329700 Rorug05G0138200 Rorug05G0138200 Rorug05G0138300 Rorug05G0138400.1
rosa_samantha	Rh1CG103800 Rh1CG136300 Rh1DG132600 Rh2AG516900 Rh2CG501700 Rh3DG365400 Rh6DG191400 Rh7AG280200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	384
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	810
AgsI	TTSAA	7 cut(s)	66, 430, 484, 511, 553, 731, 739
AjnI	CCWGG	2 cut(s)	70, 649
AluBI	AGCT	7 cut(s)	55, 152, 169, 251, 268, 632, 713
AluI	AGCT	7 cut(s)	55, 152, 169, 251, 268, 632, 713
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	149, 455
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	161, 442
BccI	CCATC	1 cut(s)	760
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	2 cut(s)	72, 651
BfaI	CTAG	3 cut(s)	21, 132, 847
BisI	GCNGC	2 cut(s)	150, 456
BlsI	GCNGC	2 cut(s)	151, 457
Bme1390I	CCNGG	2 cut(s)	72, 651
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	26, 358
BmrFI	CCNGG	2 cut(s)	72, 651
BmsI	GCATC	3 cut(s)	105, 385, 401
BpiI	GAAGAC	1 cut(s)	227
Bpu10I	CCTNAGC	3 cut(s)	170, 269, 570
Bpu14I	TTCGAA	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	488, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bse118I	RCCGGY	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	28, 679
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	72, 651
BseDI	CCNNGG	2 cut(s)	488, 617
BseJI	GATNNNNATC	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	2 cut(s)	28, 679
BseXI	GCAGC	2 cut(s)	161, 442
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	751
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	808
Bsp143I	GATC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	26, 358
BspPI	GGATC	1 cut(s)	2
BspQI	GCTCTTC	1 cut(s)	661
BspT104I	TTCGAA	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	750
BsrGI	TGTACA	1 cut(s)	808
BsrI	ACTGG	2 cut(s)	28, 679
BssAI	RCCGGY	1 cut(s)	750
BssECI	CCNNGG	2 cut(s)	488, 617
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	488, 617
Bst2UI	CCWGG	2 cut(s)	72, 651
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	661
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	153, 170, 252, 269, 570
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	72, 651
BstNSI	RCATGY	2 cut(s)	450, 613
BstSCI	CCNGG	2 cut(s)	70, 649
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	161, 442
BstV2I	GAAGAC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	809
CviAII	CATG	4 cut(s)	143, 242, 447, 610
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	5 cut(s)	153, 170, 252, 269, 570
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	488, 617
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	70, 649
EcoT14I	CCWWGG	2 cut(s)	488, 617
EcoT22I	ATGCAT	2 cut(s)	184, 452
ErhI	CCWWGG	2 cut(s)	488, 617
FaeI	CATG	4 cut(s)	146, 245, 450, 613
FatI	CATG	4 cut(s)	142, 241, 446, 609
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	2 cut(s)	150, 456
Fsp4HI	GCNGC	2 cut(s)	150, 456
FspBI	CTAG	3 cut(s)	21, 132, 847
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	2 cut(s)	150, 456
HapII	CCGG	1 cut(s)	751
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	4 cut(s)	146, 245, 450, 613
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	516, 676
HindII	GTYRAC	2 cut(s)	516, 676
HindIII	AAGCTT	2 cut(s)	167, 266
HinfI	GANTC	2 cut(s)	599, 801
HpaII	CCGG	1 cut(s)	751
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	516, 676, 684
Hpy188I	TCNGA	1 cut(s)	800
Hpy188III	TCNNGA	4 cut(s)	112, 214, 442, 572
Hpy8I	GTNNAC	3 cut(s)	516, 676, 684
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	8 cut(s)	149, 182, 281, 287, 338, 392, 450, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	5 cut(s)	153, 170, 252, 269, 570
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	146, 245, 450, 613
HspAI	GCGC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	161, 442
LweI	GCATC	3 cut(s)	105, 385, 401
MaeI	CTAG	3 cut(s)	21, 132, 847
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	612
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	83, 232, 371, 648
MfeI	CAATTG	1 cut(s)	282
MluCI	AATT	5 cut(s)	66, 282, 339, 495, 740
MmeI	TCCRAC	2 cut(s)	334, 648
MnlI	CCTC	2 cut(s)	693, 713
Mph1103I	ATGCAT	2 cut(s)	184, 452
MspI	CCGG	1 cut(s)	751
MspR9I	CCNGG	2 cut(s)	72, 651
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	72, 651
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	146, 245, 450, 613
NlaIV	GGNNCC	2 cut(s)	26, 358
NsiI	ATGCAT	2 cut(s)	184, 452
NspI	RCATGY	2 cut(s)	450, 613
NspV	TTCGAA	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	599, 801
PkrI	GCNGC	2 cut(s)	151, 457
Psp6I	CCWGG	2 cut(s)	70, 649
PspGI	CCWGG	2 cut(s)	70, 649
PspN4I	GGNNCC	2 cut(s)	26, 358
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
SapI	GCTCTTC	1 cut(s)	661
SatI	GCNGC	2 cut(s)	150, 456
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	72, 651
SfaNI	GCATC	3 cut(s)	105, 385, 401
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	5 cut(s)	66, 282, 339, 495, 740
SspMI	CTAG	3 cut(s)	21, 132, 847
StyD4I	CCNGG	2 cut(s)	70, 649
StyI	CCWWGG	2 cut(s)	488, 617
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	347, 591, 764
TasI	AATT	5 cut(s)	66, 282, 339, 495, 740
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	599, 801
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	2 cut(s)	149, 455
TspDTI	ATGAA	6 cut(s)	83, 131, 230, 233, 468, 591
TspGWI	ACGGA	2 cut(s)	149, 248
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	2 cut(s)	450, 613
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	3 cut(s)	21, 132, 847
Zsp2I	ATGCAT	2 cut(s)	184, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.