Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014858

Physical Location & Seq

Genomic Coordinates Reverse (-)

74397964 .. 74400052

Gene Structure 2089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG516900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCAAGAGAAGCGCCTCTCGTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGAGATTCTACGTTCGATAAAATTCGAAGTAATATTTCGAGGCTTTAGGTACATTCAAAGGCCGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGTGTAGATTAGAGAAGCTTGGTGGAGCAGAACAAGGTGAATTTCATCCACCCACGTTGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGTCTTACTATCTTGGCTATCTGGGCTTCACTTTAGAATGCAGTGGTATTTCATGACTTCATCATTGCTACTACTGGGAAGTACTGGCAGTGCTGCTCAAAACCAGCATATGTTGCATAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

137

Amino Acids

16.13

Weight (kDa)

9.56

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014858)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0274291
rosa_roxburghii	Rroxscaffold_3G00256910
rosa_rugosa	Rorug02G0329500 Rorug02G0329600 Rorug02G0329700 Rorug05G0138200 Rorug05G0138200 Rorug05G0138300 Rorug05G0138400.1
rosa_samantha	Rh1CG103800 Rh1CG136300 Rh1DG132600 Rh2AG516900 Rh2CG501700 Rh3DG365400 Rh6DG191400 Rh7AG280200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	80, 215, 260
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	110, 370
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	193, 271
AluI	AGCT	2 cut(s)	193, 271
AoxI	GGCC	2 cut(s)	3, 119
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	3 cut(s)	80, 215, 260
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	371
BmuI	ACTGGG	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	366, 376
Bse3DI	GCAATG	2 cut(s)	34, 350
BseGI	GGATG	1 cut(s)	220
BseMI	GCAATG	2 cut(s)	34, 350
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	366, 376
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	5, 121
BsiSI	CCGG	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	5, 121
Bsp119I	TTCGAA	1 cut(s)	84
BspANI	GGCC	2 cut(s)	5, 121
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	34, 350
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	366, 376
BssAI	RCCGGY	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 400
BstV1I	GCAGC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	5, 121
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	2 cut(s)	335, 382
BtsIMutI	CAGTG	3 cut(s)	171, 335, 382
CciI	TCATGA	1 cut(s)	339
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	109, 369
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	2 cut(s)	340, 411
CviJI	RGCY	7 cut(s)	5, 102, 121, 193, 271, 304, 313
CviKI_1	RGCY	7 cut(s)	5, 102, 121, 193, 271, 304, 313
CviQI	GTAC	2 cut(s)	109, 369
DdeI	CTNAG	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	259
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	127
FaeI	CATG	2 cut(s)	343, 414
FaiI	YATR	6 cut(s)	249, 341, 396, 398, 405, 412
FatI	CATG	2 cut(s)	339, 410
FauNDI	CATATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	5, 121
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	343, 414
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	23, 59, 340
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	70, 230
HpyCH4V	TGCA	3 cut(s)	39, 328, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 400
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	70, 230
Hsp92II	CATG	2 cut(s)	343, 414
HspAI	GCGC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	44, 135, 153, 294, 347, 357, 404
Lsp1109I	GCAGC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	70, 230
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	80, 131, 215, 244, 260
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	28, 92, 147
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	310, 400
NdeI	CATATG	1 cut(s)	396
NlaIII	CATG	2 cut(s)	343, 414
NlaIV	GGNNCC	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	339
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	2 cut(s)	110, 370
RsaNI	GTAC	2 cut(s)	109, 369
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	370
SetI	ASST	7 cut(s)	73, 110, 195, 214, 233, 273, 281
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	5 cut(s)	80, 131, 215, 244, 260
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	276
TaiI	ACGT	2 cut(s)	73, 233
TaqI	TCGA	3 cut(s)	74, 84, 97
TasI	AATT	5 cut(s)	80, 131, 215, 244, 260
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	178, 335, 382
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	4 cut(s)	143, 209, 328, 336
TspRI	CASTG	3 cut(s)	178, 335, 382
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	3 cut(s)	80, 215, 260
XspI	CTAG	1 cut(s)	276
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.