Rh6DG191400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014858
Physical Location & Seq
Reverse (-)
34341677 .. 34353264
11588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG191400.1

Sequence Viewer

Length: 444 bp
ATGGCCAAGAGAAGCGCCTCTCCTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGGGATTCGACGTTTGATAAAATTCGAAGTAATATTTCGAGGCTTTAGATACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGGATACAATTAAAATTTTGAGTCGTTTGTTACACCGTTCTTTGGCAGAGGATTATAGTAGTTGGTGTGGATTAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCGTACTAGGATTCCTCAAATTCCTTTGGAATTAATTCCATTAAGAGGTCTTACTATCTTGGCTATCTGGGCTTCACTTCAGAATGCAGTGCTAATTAAAGGTGGTTTGATACAGCTAGGGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.05

Weight (kDa)

9.55

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 80, 189, 260, 305, 333
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 3 cut(s) 175, 217, 359
AgsI TTSAA 1 cut(s) 116
AjiI CACGTC 1 cut(s) 276
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 5 cut(s) 80, 189, 260, 305, 333
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 269
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 5
BciVI GTATCC 1 cut(s) 172
BfaI CTAG 2 cut(s) 321, 431
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 84
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 217, 359
Bse3DI GCAATG 1 cut(s) 34
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 175, 217, 359
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 15, 165
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 175, 217, 359
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 84
Bsp68I TCGCGA 1 cut(s) 280
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 16, 166
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 24, 174
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstUI CGCG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 276
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 171, 408
BtuMI TCGCGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 6 cut(s) 5, 102, 121, 377, 386, 430
CviKI_1 RGCY 6 cut(s) 5, 102, 121, 377, 386, 430
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 2 cut(s) 24, 174
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 377
FaiI YATR 2 cut(s) 231, 294
FokI GGATG 1 cut(s) 252
FspBI CTAG 2 cut(s) 321, 431
GlaI GCGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 3 cut(s) 64, 196, 325
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 311, 396
Hpy188III TCNNGA 2 cut(s) 23, 279
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 72, 280
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 70, 275
HpyCH4V TGCA 2 cut(s) 39, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 24, 174
HpySE526I ACGT 2 cut(s) 70, 275
HspAI GCGC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 36, 44, 107, 153, 367
MaeI CTAG 2 cut(s) 321, 431
MaeII ACGT 2 cut(s) 70, 275
MaeIII GTNAC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 7 cut(s) 28, 92, 147, 169, 217, 339, 353
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 186, 303, 347, 356, 411
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 403
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 280
NspV TTCGAA 1 cut(s) 84
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 64, 325
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 127
RruI TCGCGA 1 cut(s) 280
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 5 cut(s) 186, 303, 347, 356, 411
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 205
SetI ASST 6 cut(s) 73, 259, 278, 364, 418, 432
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 127
SspI AATATT 1 cut(s) 93
SspMI CTAG 2 cut(s) 321, 431
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 73, 278
TaqI TCGA 3 cut(s) 67, 84, 97
TfiI GAWTC 2 cut(s) 64, 325
Tru1I TTAA 5 cut(s) 186, 303, 347, 356, 411
Tru9I TTAA 5 cut(s) 186, 303, 347, 356, 411
TscAI CASTG 2 cut(s) 178, 408
TspDTI ATGAA 2 cut(s) 143, 254
TspRI CASTG 2 cut(s) 178, 408
VpaK11BI GGWCC 1 cut(s) 127
VspI ATTAAT 1 cut(s) 347
XapI RAATTY 5 cut(s) 80, 189, 260, 305, 333
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 321, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.