Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014858

Physical Location & Seq

Genomic Coordinates Forward (+)

40560247 .. 40561762

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0329700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTGTTCTGATATACAACACAAAGAGTTGATCAATATGGAAAGGCTAAACAGCTTTAGACACCTTAACCAAAAATGGTCAAATGGAGAGCATTCCAACGAGCTACTTCATGCTCAAGCCCACATCTGGAACCACATCTTCAGCTTCATAAACTCCATGTCCCTCAAATCTGCAATTCAACTAGGTATACCAGATATCATCAACAAACATGGCTACCCCATGACTCTTTCTGAGCTCACATCTGCACTACCAATCCACCCAACCAAATCCCACAGCGTCTACCGCCTCATGCGAATATTGGTGCACTCTGGCTTCTTTGCTAAGAAAAAGCTGAGTAAAACTGATGAGGAAGGTTATACCCTTACTGATGCTTCCCAGCTCCTTCTGAAGGATCATCCCTTAAGCCTAACGCCCTTCTTAACTGCCATGCTCGATCCTGTTTTGACCAAACCATGGAATTACTTGAGCACTTGGTTCCAAAATGATGACCCTACGCCATTTGACACAGCACATGGGATGACATTTTGGGATTACGGGAACCATCAGCCAAGTATTGCCCATTTCTTCAACGATGCCATGGCTAGCGATGCTCGGTTGGTCACCAGCGTGATCATCGATGATTGCAAAGGAGTGTTTGAGGGATTAGAGTCATTGGTTGATGTTGGAGGTGGTACAGGAACTGTGGCAAAGGCCATTGCTGATGCATTCCCACATATTGAATGCACTGTACTTGATCTCCCACATGTGGTGGCTGACCTGCAAGGAAGTAAGAACTTGAAATATACTGGAGGTGACATGTTTGAGGCAGTTCCTCCTGCCGATACAGTTTTACTCAAGTGGATATTGCATGACTGGAACGATGAAGAATGTGTCAAAATACTCAAGCGATCTAGAGAGGCAATTACAAGCAAGGACAAGAAAGGCAAGGTGATTATCATAGATATGATGATGGAGAACCAGAAAGGCGATGAGGAATCAATTGAAACGCAGCTGTTCTTCGACATGCTGATGATGGCCCTCGTCACAGGAAAAGAAAGGAATGAGAAAGAATGGGCTAAGCTCTTCACTGATGCTGGTTTCAGTGACTATAAGATAACTCCCATTTTGGGTTTAAGGTCTCTTATTGAGGTTTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

379

Amino Acids

42.84

Weight (kDa)

5.61

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	43 - 131	1.5e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	152 - 361	4.2e-59	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014858)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0274291
rosa_roxburghii	Rroxscaffold_3G00256910
rosa_rugosa	Rorug02G0329500 Rorug02G0329600 Rorug02G0329700 Rorug05G0138200 Rorug05G0138200 Rorug05G0138300 Rorug05G0138400.1
rosa_samantha	Rh1CG103800 Rh1CG136300 Rh1DG132600 Rh2AG516900 Rh2CG501700 Rh3DG365400 Rh6DG191400 Rh7AG280200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccI	GTMKAC	2 cut(s)	187, 279
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	399, 428
AcuI	CTGAAG	2 cut(s)	124, 407
AfaI	GTAC	2 cut(s)	673, 729
AfiI	CCNNNNNNNGG	5 cut(s)	126, 388, 453, 745, 1106
AflII	CTTAAG	1 cut(s)	400
AflIII	ACRYGT	2 cut(s)	742, 795
AgsI	TTSAA	5 cut(s)	179, 568, 719, 778, 983
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	8 cut(s)	54, 103, 144, 235, 331, 379, 991, 1060
AluI	AGCT	8 cut(s)	54, 103, 144, 235, 331, 379, 991, 1060
Alw21I	GWGCWC	3 cut(s)	237, 306, 470
Alw26I	GTCTC	1 cut(s)	1122
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	399, 428
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	690, 1014
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	988
AspS9I	GGNCC	1 cut(s)	1015
AsuHPI	GGTGA	3 cut(s)	592, 803, 940
AsuNHI	GCTAGC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	237, 306, 470
BbvI	GCAGC	1 cut(s)	1000
BccI	CCATC	3 cut(s)	549, 943, 1006
BclI	TGATCA	2 cut(s)	30, 609
BcoDI	GTCTC	1 cut(s)	1122
BfaI	CTAG	3 cut(s)	182, 582, 891
BfrI	CTTAAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	1 cut(s)	989
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	1 cut(s)	990
BmgT120I	GGNCC	1 cut(s)	1015
BmiI	GGNNCC	3 cut(s)	131, 476, 539
BmsI	GCATC	5 cut(s)	358, 562, 577, 691, 1060
BmtI	GCTAGC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	4 cut(s)	99, 484, 818, 866
Bsa29I	ATCGAT	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	1122
BsaJI	CCNNGG	2 cut(s)	452, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 388, 453, 745, 1106
Bse1I	ACTGG	2 cut(s)	790, 857
Bse3DI	GCAATG	1 cut(s)	693
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	452, 576
BseGI	GGATG	2 cut(s)	394, 522
BseLI	CCNNNNNNNGG	5 cut(s)	126, 388, 453, 745, 1106
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	222, 323
BseNI	ACTGG	2 cut(s)	790, 857
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	1000
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	692, 1016
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	3 cut(s)	237, 306, 470
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	5 cut(s)	126, 388, 453, 745, 1106
BsmAI	GTCTC	1 cut(s)	1122
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	3 cut(s)	91, 704, 725
BsnI	GGCC	2 cut(s)	692, 1016
Bso31I	GGTCTC	1 cut(s)	1122
Bsp1286I	GDGCHC	3 cut(s)	237, 306, 470
Bsp143I	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
Bsp1720I	GCTNAGC	1 cut(s)	1056
Bsp19I	CCATGG	2 cut(s)	452, 576
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	2 cut(s)	692, 1016
BspCNI	CTCAG	2 cut(s)	223, 324
BspDI	ATCGAT	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	131, 476, 539
BspMI	ACCTGC	1 cut(s)	765
BspOI	GCTAGC	1 cut(s)	585
BspPI	GGATC	2 cut(s)	399, 428
BspQI	GCTCTTC	1 cut(s)	1067
BspTI	CTTAAG	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	1122
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	790, 857
BssECI	CCNNGG	2 cut(s)	452, 576
BssMI	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
BssNAI	GTATAC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	452, 576
Bst1107I	GTATAC	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	682, 727, 826
Bst6I	CTCTTC	1 cut(s)	1067
BstAFI	CTTAAG	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	231, 321, 332, 1056
BstDSI	CCRYGG	2 cut(s)	452, 576
BstEII	GGTNACC	1 cut(s)	598
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	394, 522
BstKTI	GATC	6 cut(s)	33, 394, 436, 612, 736, 890
BstMAI	GTCTC	1 cut(s)	1122
BstMBI	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 587
BstNSI	RCATGY	3 cut(s)	746, 799, 1006
BstPI	GGTNACC	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	1000
BstZ17I	GTATAC	1 cut(s)	188
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	692, 1016
BsuTUI	ATCGAT	1 cut(s)	615
BtgI	CCRYGG	2 cut(s)	452, 576
BtgZI	GCGATG	2 cut(s)	600, 981
BtsCI	GGATG	2 cut(s)	394, 522
BtsIMutI	CAGTG	3 cut(s)	723, 1065, 1087
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	1015
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	672, 728
CviQI	GTAC	2 cut(s)	672, 728
DdeI	CTNAG	4 cut(s)	231, 321, 332, 1056
DpnI	GATC	6 cut(s)	32, 393, 435, 611, 735, 889
DpnII	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
Eam1104I	CTCTTC	1 cut(s)	1067
EarI	CTCTTC	1 cut(s)	1067
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	452, 576
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	1122
Eco32I	GATATC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	124, 407
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	452, 576
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	452, 576
FaqI	GGGAC	1 cut(s)	145
FbaI	TGATCA	2 cut(s)	30, 609
FblI	GTMKAC	2 cut(s)	187, 279
Fnu4HI	GCNGC	1 cut(s)	989
FokI	GGATG	2 cut(s)	381, 529
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	989
FspBI	CTAG	3 cut(s)	182, 582, 891
GluI	GCNGC	1 cut(s)	989
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	692, 1016
HgaI	GACGC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	223, 647, 974
HphI	GGTGA	3 cut(s)	592, 803, 940
Hpy166II	GTNNAC	3 cut(s)	188, 280, 304
Hpy188I	TCNGA	3 cut(s)	10, 232, 387
Hpy188III	TCNNGA	2 cut(s)	127, 891
Hpy8I	GTNNAC	3 cut(s)	188, 280, 304
HpyAV	CCTTC	4 cut(s)	344, 382, 392, 424
HpyCH4III	ACNGT	3 cut(s)	682, 727, 826
HpyCH4V	TGCA	8 cut(s)	173, 245, 304, 624, 704, 723, 760, 847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 587
HpyF3I	CTNAG	4 cut(s)	231, 321, 332, 1056
Ksp22I	TGATCA	2 cut(s)	30, 609
Kzo9I	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
LguI	GCTCTTC	1 cut(s)	1067
LmnI	GCTCC	1 cut(s)	384
Lsp1109I	GCAGC	1 cut(s)	1000
LweI	GCATC	5 cut(s)	358, 562, 577, 691, 1060
MaeI	CTAG	3 cut(s)	182, 582, 891
MaeIII	GTNAC	4 cut(s)	598, 791, 1021, 1082
MalI	GATC	6 cut(s)	32, 393, 435, 611, 735, 889
MboI	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
MboII	GAAGA	5 cut(s)	130, 556, 875, 988, 1054
MfeI	CAATTG	1 cut(s)	978
MhlI	GDGCHC	3 cut(s)	237, 306, 470
MluCI	AATT	4 cut(s)	174, 457, 900, 978
MlyI	GAGTC	2 cut(s)	217, 656
MmeI	TCCRAC	2 cut(s)	120, 643
Mph1103I	ATGCAT	1 cut(s)	706
MseI	TTAA	4 cut(s)	66, 401, 419, 1112
MslI	CAYNNNNRTG	3 cut(s)	605, 941, 1007
MspA1I	CMGCKG	1 cut(s)	991
MspCI	CTTAAG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	978
Mva1269I	GAATGC	3 cut(s)	91, 704, 725
MwoI	GCNNNNNNNGC	2 cut(s)	282, 587
NcoI	CCATGG	2 cut(s)	452, 576
NdeII	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
NheI	GCTAGC	1 cut(s)	581
NlaIV	GGNNCC	3 cut(s)	131, 476, 539
NmuCI	GTSAC	4 cut(s)	598, 791, 1021, 1082
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	3 cut(s)	746, 799, 1006
OliI	CACNNNNGTG	1 cut(s)	605
PciI	ACATGT	2 cut(s)	742, 795
PciSI	GCTCTTC	1 cut(s)	1067
PctI	GAATGC	3 cut(s)	91, 704, 725
PfeI	GAWTC	1 cut(s)	974
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	990
PleI	GAGTC	2 cut(s)	217, 655
PpsI	GAGTC	2 cut(s)	217, 655
PscI	ACATGT	2 cut(s)	742, 795
Psp124BI	GAGCTC	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	3 cut(s)	131, 476, 539
PspPI	GGNCC	1 cut(s)	1015
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	2 cut(s)	673, 729
RsaNI	GTAC	2 cut(s)	672, 728
RseI	CAYNNNNRTG	3 cut(s)	605, 941, 1007
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	1067
SaqAI	TTAA	4 cut(s)	66, 401, 419, 1112
SatI	GCNGC	1 cut(s)	989
Sau3AI	GATC	6 cut(s)	30, 391, 433, 609, 733, 887
Sau96I	GGNCC	1 cut(s)	1015
SchI	GAGTC	2 cut(s)	217, 656
SduI	GDGCHC	3 cut(s)	237, 306, 470
SfaNI	GCATC	5 cut(s)	358, 562, 577, 691, 1060
SmiMI	CAYNNNNRTG	3 cut(s)	605, 941, 1007
SmlI	CTYRAG	5 cut(s)	114, 400, 463, 833, 881
SmoI	CTYRAG	5 cut(s)	114, 400, 463, 833, 881
Sse9I	AATT	4 cut(s)	174, 457, 900, 978
SsiI	CCGC	1 cut(s)	283
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	3 cut(s)	182, 582, 891
SstI	GAGCTC	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	452, 576
TaaI	ACNGT	3 cut(s)	682, 727, 826
TaqI	TCGA	3 cut(s)	432, 615, 999
TasI	AATT	4 cut(s)	174, 457, 900, 978
TatI	WGTACW	1 cut(s)	727
TfiI	GAWTC	1 cut(s)	974
Tru1I	TTAA	4 cut(s)	66, 401, 419, 1112
Tru9I	TTAA	4 cut(s)	66, 401, 419, 1112
TscAI	CASTG	3 cut(s)	730, 1072, 1087
TseFI	GTSAC	4 cut(s)	598, 791, 1021, 1082
TseI	GCWGC	1 cut(s)	988
Tsp45I	GTSAC	4 cut(s)	598, 791, 1021, 1082
TspDTI	ATGAA	3 cut(s)	98, 136, 876
TspRI	CASTG	3 cut(s)	730, 1072, 1087
Van91I	CCANNNNNTGG	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	890
XceI	RCATGY	3 cut(s)	746, 799, 1006
XmiI	GTMKAC	2 cut(s)	187, 279
XspI	CTAG	3 cut(s)	182, 582, 891
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.