Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014858

Physical Location & Seq

Genomic Coordinates Forward (+)

27792050 .. 27793583

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG132600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCAAGAGAAGCGCCTCTCCTGAGTGGTTCCATTGCAACCCATTTACTGACATTCAGGGGATTCGACGTTCGATAAAATTCGAAGTAATATTTCGAGGCTTTAGGTACATTCAAAGGCTGGTGGACCAATTCCCTCCTGTAAAAGCGTTTCATTTTGTCCTTGACCACACTGAGGATACAATTAAAATTTTGAGCCGTTTGTTACACCATTCTTTGGCAGAGGATTGTAGTAGTTGGTGTGGATTAGAGAAGCTTGGTGGAGCAGAACAAGGTGAATTTCATCCACCCACGTCGCGAATGACCAATTATGTTGTGTTTAAATTCGGAGAGCTTACTAGGTCTTACAATGTCTTACTATCTTGGCTATCTGGGCTTCACTTCAGAATGCAGTGGTATTTCATGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF155

Protein Analysis

137

Amino Acids

16.15

Weight (kDa)

8.88

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014858)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0274291
rosa_roxburghii	Rroxscaffold_3G00256910
rosa_rugosa	Rorug02G0329500 Rorug02G0329600 Rorug02G0329700 Rorug05G0138200 Rorug05G0138200 Rorug05G0138300 Rorug05G0138400.1
rosa_samantha	Rh1CG103800 Rh1CG136300 Rh1DG132600 Rh2AG516900 Rh2CG501700 Rh3DG365400 Rh6DG191400 Rh7AG280200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	80, 189, 278, 323
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	175, 217
AgsI	TTSAA	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	294
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	2 cut(s)	256, 334
AluI	AGCT	2 cut(s)	256, 334
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	4 cut(s)	80, 189, 278, 323
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 217
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	175, 217
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	15, 165
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	175, 217
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	84
Bsp68I	TCGCGA	1 cut(s)	298
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	16, 166
BspFNI	CGCG	1 cut(s)	298
BspHI	TCATGA	2 cut(s)	402, 410
BspLI	GGNNCC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	24, 174
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	171, 398
BtuMI	TCGCGA	1 cut(s)	298
CciI	TCATGA	2 cut(s)	402, 410
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	403, 411
CviJI	RGCY	8 cut(s)	5, 102, 121, 198, 256, 334, 367, 376
CviKI_1	RGCY	8 cut(s)	5, 102, 121, 198, 256, 334, 367, 376
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	24, 174
DraI	TTTAAA	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	367
FaeI	CATG	2 cut(s)	406, 414
FaiI	YATR	3 cut(s)	312, 404, 412
FatI	CATG	2 cut(s)	402, 410
FokI	GGATG	1 cut(s)	270
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	406, 414
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	329, 386
Hpy188III	TCNNGA	4 cut(s)	23, 297, 403, 411
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	72, 298
HpyCH4IV	ACGT	2 cut(s)	70, 293
HpyCH4V	TGCA	2 cut(s)	39, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	2 cut(s)	24, 174
HpySE526I	ACGT	2 cut(s)	70, 293
Hsp92II	CATG	2 cut(s)	406, 414
HspAI	GCGC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	5 cut(s)	36, 44, 107, 153, 357
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	2 cut(s)	70, 293
MaeIII	GTNAC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	80, 131, 183, 189, 278, 307, 323
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	28, 92, 147, 169, 217
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	186, 321
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	393
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	406, 414
NlaIV	GGNNCC	1 cut(s)	32
NruI	TCGCGA	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	2 cut(s)	402, 410
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	298
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	186, 321
Sau96I	GGNCC	1 cut(s)	127
SetI	ASST	7 cut(s)	73, 110, 258, 277, 296, 336, 344
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	7 cut(s)	80, 131, 183, 189, 278, 307, 323
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	339
TaiI	ACGT	2 cut(s)	73, 296
TaqI	TCGA	4 cut(s)	67, 74, 84, 97
TasI	AATT	7 cut(s)	80, 131, 183, 189, 278, 307, 323
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	186, 321
Tru9I	TTAA	2 cut(s)	186, 321
TscAI	CASTG	2 cut(s)	178, 398
TspDTI	ATGAA	4 cut(s)	143, 272, 391, 399
TspRI	CASTG	2 cut(s)	178, 398
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	4 cut(s)	80, 189, 278, 323
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.