Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005712

Physical Location & Seq

Genomic Coordinates Reverse (-)

55796424 .. 55800391

Gene Structure 3968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGGTGTTGTGACTGTTGGTGAATTGAAGCCTAGCATTTCAGGGAAGAGGTCTTTTCGTCCAAGCTCGAGTATAAGGCATGCCACAGAATGGCCAATCTCTGATGTTTCTAGTGATCTTACTGTGGAGATAGGAGCATCAAGCTTTGCCCTTCACAAGTTCCCTCTAGTTTCTCGGAGTGGAAAGATTCGGAAACTGTTGCTTGAAGCAAAAGATTCAAAAGTTTCACGTGTGATTCTTCCATCTGTTCCGGGCGGAGCAGAGGCATTTGAGCTAGCTGCAAAGTTCTGTTATGGCCATAATATTGAGATCACACAAGCAAATGTTGCCTTGCTCCGTTGCACAGCTCACTTTCTTGAAATGACGGAAGAGTATGCTGAGAAGAGCCTGGAAACAAGAACTGAAGCTTATCTAAAGGATATGGTGTTCCCAAACATATCAAAATCAATAGCAGTTCTTCATCGTTGCGAAACACTCTTGCCTGCAGCAGAAGAAACCAACCTGGTTAGCAGGCTCATCAATGCAATTGCAAACAATGCGTGCAAAGAGCAGCTCACCTCTGGCTTACTGAAACTTGACCACAACTTTCCTTCAAAAGTAGCTACTATGGAACCTGAAACGCCCTCGGATTGGTGGGGAAAAGCGCTTTCGGTGCTTAGTCTTGACTTCTTCCAGAGGGTTTTATCTGCAGTGAAAACCAAGGGTCTTAAACAGGATATGATCAGCAAAATTTTGATAAATTACGCCCATAACTCTCTTCAAGGTCTTGTTGTAAGGGATGCGCAATTGGTCAAAGGAAATCTCTTCGATTTAGAACTGCAAAAGAAACAAAGGGTCATTGTTGAAGCTATTGTTAGTTTACTACCAACACAATCAAGGAAGAGTCCAGTTCCAATGGCATTTCTTTCGAGTTTGTTGAAAACTGCAATTGCAGCATCAGCATCCACTTCATGCAGATCTGATTTGGAGAGGCGGATTGGTTTGCAGCTGGATCAGGCAATTCTTGAAGACATCCTCATTCCTACAAACTCACATGGAAACAACCACAGCACAATTTATGATGCCGACACTATAGTGAGAATCTTCTCCATATTTTTGAACTTGGATGAGGATGATGAAGACGATACTAATCTGTTAAGAGATGAAAGTCAAATGGTTTATGATTTTGACAGCCCTGGATCTCCTAAACAAAGTTCAATCTTGAAGGTCTCTAAGTTACTGGACAATTATCTTGCCGAAGTTGCATTGGACTCAAACTTGTCACCATCAAAGTTCACAGCTCTAGCAGAACTACTTCCAGACCATGCACGAATAGTAAGTGATGGACTCTACAGAGCTGTGGATATCTTCCTCAAAGTTCACCCAAACATGAAGGACTCTGAAAGGTACCGGCTTTGCAAAACCATAGACTGCCAGAAACTATCCCAAGAAGCCTGCAGTCATGCAGCACAGAATGAAAGGCTACCGGTACAGATGGCAGTTCAGGTCCTATACTTTGAGCAAATCAGGCTGAGGAATGCAATGAATGGTGGCCACAATCAGTTCTTCTTTGGCGCAATTAATGGCACTCAATTCCCTCAAAGATCAGGCAGTGGTGCTGGCAGTGGAGCCATTTCCCCTAGAGACAACTACGCATCAGTTCGGAGAGAGAATCGAGAGCTGAAGCTTGAAGTCGCTAGAATGAGAATGAGGCTGACAGACTTGGAAAAAGATCATGTCACTATGAAGCAAGAGCTTGTTAAGACACACCCTGCAAATAAGTTGTTCAAATCCTTCACCAAAAAATTGGGGAAGATCAATGCATTGTTCCGGATTAATAGTATCAAGACCTTGGGGGGTAAGGCGCATTCGGAGAGCAGATTCCCGTTTCAGAAGCGAAGGCGCCATTCAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

632

Amino Acids

70.5

Weight (kDa)

9.12

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	38 - 123	4e-06	BTB/POZ domain
NPH3	PF03000	210 - 479	1.2e-89	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03010 AT1G03010 AT1G03010
fragaria_vesca	FvH4_2g24980 FvH4_2g24980
malus_domestica	MD03G1278600.v1.1 MD03G1278700.v1.1 MD11G1301000.v1.1
prunus_persica	Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1
pyrus_communis	pycom03g22180 pycom11g26390
rosa_chinensis	RchiOBHm_Chr6g0292951
rosa_laevigata	RLG00000011979
rosa_roxburghii	Rroxscaffold_7G00174540
rosa_rugosa	Rorug06G0231100 Rorug06G0231200 Rorug06G0231300 Rorug06G0231400 Rorug06G0231400 Rorug06G0231400 Rorug06G0231500
rosa_samantha	Rh6AG344100 Rh6BG351500 Rh6CG358600 Rh6DG344300
rosa_wichuraiana	Rw6G030040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	783
Acc65I	GGTACC	1 cut(s)	1386
AccB1I	GGYRCC	2 cut(s)	1386, 1881
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	1809
AciI	CCGC	2 cut(s)	255, 973
AclWI	GGATC	2 cut(s)	999, 1186
AcoI	YGGCCR	3 cut(s)	92, 295, 1531
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	2 cut(s)	423, 1682
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	1882
AfaI	GTAC	2 cut(s)	1388, 1470
AfeI	AGCGCT	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	90, 630
AflIII	ACRYGT	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	1465
AjnI	CCWGG	3 cut(s)	387, 501, 1174
AleI	CACNNNNGTG	1 cut(s)	1073
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
Alw26I	GTCTC	2 cut(s)	1213, 1617
AlwI	GGATC	2 cut(s)	999, 1186
Ama87I	CYCGRG	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	1809
Aor51HI	AGCGCT	1 cut(s)	645
AoxI	GGCC	3 cut(s)	92, 295, 1531
ApeKI	GCWGC	6 cut(s)	278, 485, 550, 932, 985, 1445
ApoI	RAATTY	1 cut(s)	729
AseI	ATTAAT	2 cut(s)	1560, 1815
AsiGI	ACCGGT	1 cut(s)	1465
Asp700I	GAANNNNTTC	1 cut(s)	1293
Asp718I	GGTACC	1 cut(s)	1386
AspLEI	GCGC	5 cut(s)	646, 784, 1556, 1846, 1884
AspS9I	GGNCC	1 cut(s)	1486
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	5 cut(s)	32, 547, 1254, 1352, 1768
AsuNHI	GCTAGC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	1486
BalI	TGGCCA	3 cut(s)	94, 297, 1533
BanI	GGYRCC	2 cut(s)	1386, 1881
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	1014, 1125
BbvCI	CCTCAGC	1 cut(s)	1511
BbvI	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1457
BccI	CCATC	4 cut(s)	250, 1273, 1316, 1468
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	3 cut(s)	389, 503, 1176
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	1213, 1617
BfaI	CTAG	7 cut(s)	33, 111, 167, 275, 1283, 1620, 1677
BfmI	CTRYAG	5 cut(s)	483, 687, 1071, 1330, 1435
BfoI	RGCGCY	2 cut(s)	647, 1885
BglII	AGATCT	1 cut(s)	956
BisI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1446
BlsI	GCNGC	6 cut(s)	280, 487, 552, 934, 987, 1447
Bme1390I	CCNGG	4 cut(s)	252, 389, 503, 1176
Bme18I	GGWCC	1 cut(s)	1486
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	1486
BmiI	GGNNCC	4 cut(s)	612, 1388, 1609, 1883
BmrFI	CCNGG	4 cut(s)	252, 389, 503, 1176
BmsI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1643
BmtI	GCTAGC	1 cut(s)	278
BpiI	GAAGAC	2 cut(s)	1014, 1125
Bpu10I	CCTNAGC	1 cut(s)	1511
BpuMI	CCSGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaHI	GRCGYC	1 cut(s)	1882
BsaI	GGTCTC	1 cut(s)	1213
BsaJI	CCNNGG	4 cut(s)	624, 699, 1174, 1830
BsaWI	WCCGGW	2 cut(s)	1465, 1809
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 630
Bse118I	RCCGGY	2 cut(s)	1389, 1465
Bse1I	ACTGG	2 cut(s)	887, 1224
Bse3DI	GCAATG	1 cut(s)	1527
Bse8I	GATNNNNATC	1 cut(s)	1128
BseAI	TCCGGA	1 cut(s)	1809
BseBI	CCWGG	3 cut(s)	389, 503, 1176
BseDI	CCNNGG	4 cut(s)	624, 699, 1174, 1830
BseGI	GGATG	5 cut(s)	784, 941, 1011, 1111, 1117
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	2 cut(s)	90, 630
BseMI	GCAATG	1 cut(s)	1527
BseMII	CTCAG	2 cut(s)	369, 1502
BseNI	ACTGG	2 cut(s)	887, 1224
BseXI	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1457
BshFI	GGCC	3 cut(s)	94, 297, 1533
BshNI	GGYRCC	2 cut(s)	1386, 1881
BshTI	ACCGGT	1 cut(s)	1465
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	4 cut(s)	251, 1390, 1466, 1810
BslI	CCNNNNNNNGG	2 cut(s)	90, 630
BsmAI	GTCTC	2 cut(s)	1213, 1617
BsmI	GAATGC	2 cut(s)	1522, 1846
BsnI	GGCC	3 cut(s)	94, 297, 1533
Bso31I	GGTCTC	1 cut(s)	1213
BsoBI	CYCGRG	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	1809
Bsp143I	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
BspACI	CCGC	2 cut(s)	255, 973
BspANI	GGCC	3 cut(s)	94, 297, 1533
BspCNI	CTCAG	2 cut(s)	370, 1503
BspEI	TCCGGA	1 cut(s)	1809
BspHI	TCATGA	1 cut(s)	1895
BspLI	GGNNCC	4 cut(s)	612, 1388, 1609, 1883
BspMAI	CTGCAG	3 cut(s)	487, 691, 1439
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	999, 1186
BspQI	GCTCTTC	1 cut(s)	377
BspT107I	GGYRCC	2 cut(s)	1386, 1881
BspTNI	GGTCTC	1 cut(s)	1213
BsrDI	GCAATG	1 cut(s)	1527
BsrFI	RCCGGY	2 cut(s)	1389, 1465
BsrI	ACTGG	2 cut(s)	887, 1224
BssAI	RCCGGY	2 cut(s)	1389, 1465
BssECI	CCNNGG	4 cut(s)	624, 699, 1174, 1830
BssMI	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
BssNI	GRCGYC	1 cut(s)	1882
BssT1I	CCWWGG	2 cut(s)	699, 1830
Bst2UI	CCWGG	3 cut(s)	389, 503, 1176
Bst4CI	ACNGT	3 cut(s)	16, 124, 198
Bst6I	CTCTTC	6 cut(s)	41, 363, 377, 762, 809, 875
BstACI	GRCGYC	1 cut(s)	1882
BstAPI	GCANNNNNTGC	2 cut(s)	326, 536
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	7 cut(s)	81, 276, 483, 512, 541, 1435, 1600
BstDEI	CTNAG	4 cut(s)	378, 656, 1212, 1511
BstF5I	GGATG	5 cut(s)	784, 941, 1011, 1111, 1117
BstH2I	RGCGCY	2 cut(s)	647, 1885
BstHHI	GCGC	5 cut(s)	646, 784, 1556, 1846, 1884
BstKTI	GATC	9 cut(s)	118, 312, 723, 959, 994, 1181, 1586, 1714, 1797
BstMAI	GTCTC	2 cut(s)	1213, 1617
BstMBI	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 536, 652, 932, 938, 1241, 1507
BstNI	CCWGG	3 cut(s)	389, 503, 1176
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	250, 387, 501, 1174
BstSFI	CTRYAG	5 cut(s)	483, 687, 1071, 1330, 1435
BstV1I	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1457
BstV2I	GAAGAC	2 cut(s)	1014, 1125
BstX2I	RGATCY	2 cut(s)	956, 1178
BstXI	CCANNNNNNTGG	1 cut(s)	1786
BstYI	RGATCY	2 cut(s)	956, 1178
BsuRI	GGCC	3 cut(s)	94, 297, 1533
BtsCI	GGATG	5 cut(s)	784, 941, 1011, 1111, 1117
BtsI	GCAGTG	3 cut(s)	696, 1597, 1609
BtsIMutI	CAGTG	3 cut(s)	696, 1597, 1609
Cac8I	GCNNGC	7 cut(s)	81, 276, 483, 512, 541, 1435, 1600
CciI	TCATGA	1 cut(s)	1895
CfoI	GCGC	5 cut(s)	646, 784, 1556, 1846, 1884
Cfr10I	RCCGGY	2 cut(s)	1389, 1465
Cfr13I	GGNCC	1 cut(s)	1486
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	1387, 1469
CspAI	ACCGGT	1 cut(s)	1465
CviAII	CATG	8 cut(s)	80, 951, 1034, 1304, 1369, 1442, 1715, 1896
CviQI	GTAC	2 cut(s)	1387, 1469
DdeI	CTNAG	4 cut(s)	378, 656, 1212, 1511
DinI	GGCGCC	1 cut(s)	1883
DpnI	GATC	9 cut(s)	117, 311, 722, 958, 993, 1180, 1585, 1713, 1796
DpnII	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
EaeI	YGGCCR	3 cut(s)	92, 295, 1531
Eam1104I	CTCTTC	6 cut(s)	41, 363, 377, 762, 809, 875
EarI	CTCTTC	6 cut(s)	41, 363, 377, 762, 809, 875
EciI	GGCGGA	2 cut(s)	270, 988
Eco130I	CCWWGG	2 cut(s)	699, 1830
Eco31I	GGTCTC	1 cut(s)	1213
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	1486
Eco47III	AGCGCT	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	423, 1682
Eco72I	CACGTG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	1486
EcoRII	CCWGG	3 cut(s)	387, 501, 1174
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	2 cut(s)	699, 1830
EcoT22I	ATGCAT	1 cut(s)	1804
EgeI	GGCGCC	1 cut(s)	1883
EheI	GGCGCC	1 cut(s)	1883
ErhI	CCWWGG	2 cut(s)	699, 1830
FaeI	CATG	8 cut(s)	83, 954, 1037, 1307, 1372, 1445, 1718, 1899
FatI	CATG	8 cut(s)	79, 950, 1033, 1303, 1368, 1441, 1714, 1895
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1446
FokI	GGATG	5 cut(s)	791, 928, 998, 1118, 1124
Fsp4HI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1446
FspBI	CTAG	7 cut(s)	33, 111, 167, 275, 1283, 1620, 1677
FspI	TGCGCA	1 cut(s)	783
GlaI	GCGC	5 cut(s)	645, 783, 1555, 1845, 1883
GluI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1446
HaeII	RGCGCY	2 cut(s)	647, 1885
HaeIII	GGCC	3 cut(s)	94, 297, 1533
HapII	CCGG	4 cut(s)	251, 1390, 1466, 1810
HhaI	GCGC	5 cut(s)	646, 784, 1556, 1846, 1884
Hin1I	GRCGYC	1 cut(s)	1882
Hin1II	CATG	8 cut(s)	83, 954, 1037, 1307, 1372, 1445, 1718, 1899
Hin6I	GCGC	5 cut(s)	644, 782, 1554, 1844, 1882
HinP1I	GCGC	5 cut(s)	644, 782, 1554, 1844, 1882
HindIII	AAGCTT	3 cut(s)	142, 405, 1664
HpaII	CCGG	4 cut(s)	251, 1390, 1466, 1810
HphI	GGTGA	5 cut(s)	32, 547, 1254, 1352, 1768
Hpy166II	GTNNAC	3 cut(s)	860, 1275, 1360
Hpy188I	TCNGA	9 cut(s)	103, 177, 192, 628, 961, 1381, 1644, 1852, 1872
Hpy8I	GTNNAC	3 cut(s)	860, 1275, 1360
HpyAV	CCTTC	6 cut(s)	161, 600, 1198, 1366, 1783, 1872
HpyCH4III	ACNGT	3 cut(s)	16, 124, 198
HpyCH4IV	ACGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 536, 652, 932, 938, 1241, 1507
HpyF3I	CTNAG	4 cut(s)	378, 656, 1212, 1511
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	1882
Hsp92II	CATG	8 cut(s)	83, 954, 1037, 1307, 1372, 1445, 1718, 1899
HspAI	GCGC	5 cut(s)	644, 782, 1554, 1844, 1882
KasI	GGCGCC	1 cut(s)	1881
Kpn2I	TCCGGA	1 cut(s)	1809
KpnI	GGTACC	1 cut(s)	1390
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	4 cut(s)	134, 257, 339, 1607
Lsp1109I	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1457
LweI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1643
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	7 cut(s)	33, 111, 167, 275, 1283, 1620, 1677
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	4 cut(s)	10, 1215, 1260, 1717
MalI	GATC	9 cut(s)	117, 311, 722, 958, 993, 1180, 1585, 1713, 1796
MboI	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
MfeI	CAATTG	3 cut(s)	525, 785, 927
MflI	RGATCY	2 cut(s)	956, 1178
MlsI	TGGCCA	3 cut(s)	94, 297, 1533
MluNI	TGGCCA	3 cut(s)	94, 297, 1533
Mly113I	GGCGCC	1 cut(s)	1882
MlyI	GAGTC	4 cut(s)	892, 1244, 1320, 1370
Mox20I	TGGCCA	3 cut(s)	94, 297, 1533
Mph1103I	ATGCAT	1 cut(s)	1804
MroI	TCCGGA	1 cut(s)	1809
MroXI	GAANNNNTTC	1 cut(s)	1293
MscI	TGGCCA	3 cut(s)	94, 297, 1533
MseI	TTAA	5 cut(s)	708, 1136, 1560, 1740, 1815
MslI	CAYNNNNRTG	1 cut(s)	1073
Msp20I	TGGCCA	3 cut(s)	94, 297, 1533
MspA1I	CMGCKG	1 cut(s)	988
MspI	CCGG	4 cut(s)	251, 1390, 1466, 1810
MspR9I	CCNGG	4 cut(s)	252, 389, 503, 1176
MunI	CAATTG	3 cut(s)	525, 785, 927
Mva1269I	GAATGC	2 cut(s)	1522, 1846
MvaI	CCWGG	3 cut(s)	389, 503, 1176
MwoI	GCNNNNNNNGC	7 cut(s)	326, 536, 652, 932, 938, 1241, 1507
NarI	GGCGCC	1 cut(s)	1882
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	8 cut(s)	83, 954, 1037, 1307, 1372, 1445, 1718, 1899
NlaIV	GGNNCC	4 cut(s)	612, 1388, 1609, 1883
NmuCI	GTSAC	3 cut(s)	10, 1260, 1717
NsbI	TGCGCA	1 cut(s)	783
NsiI	ATGCAT	1 cut(s)	1804
NspI	RCATGY	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	1073
PaeI	GCATGC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	1895
PciSI	GCTCTTC	1 cut(s)	377
PctI	GAATGC	2 cut(s)	1522, 1846
PdmI	GAANNNNTTC	1 cut(s)	1293
PfeI	GAWTC	6 cut(s)	187, 215, 235, 1080, 1651, 1860
PflMI	CCANNNNNTGG	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	1465
PkrI	GCNGC	6 cut(s)	280, 487, 552, 934, 987, 1447
PleI	GAGTC	4 cut(s)	891, 1244, 1320, 1370
PluTI	GGCGCC	1 cut(s)	1885
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	4 cut(s)	891, 1244, 1320, 1370
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	1486
PshBI	ATTAAT	2 cut(s)	1560, 1815
Psp5II	RGGWCCY	1 cut(s)	1486
Psp6I	CCWGG	3 cut(s)	387, 501, 1174
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	387, 501, 1174
PspN4I	GGNNCC	4 cut(s)	612, 1388, 1609, 1883
PspPI	GGNCC	1 cut(s)	1486
PspPPI	RGGWCCY	1 cut(s)	1486
PspXI	VCTCGAGB	1 cut(s)	67
PstI	CTGCAG	3 cut(s)	487, 691, 1439
PsuI	RGATCY	2 cut(s)	956, 1178
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	2 cut(s)	1388, 1470
RsaNI	GTAC	2 cut(s)	1387, 1469
RseI	CAYNNNNRTG	1 cut(s)	1073
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	708, 1136, 1560, 1740, 1815
SatI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1446
Sau3AI	GATC	9 cut(s)	115, 309, 720, 956, 991, 1178, 1583, 1711, 1794
Sau96I	GGNCC	1 cut(s)	1486
SchI	GAGTC	4 cut(s)	892, 1244, 1320, 1370
ScrFI	CCNGG	4 cut(s)	252, 389, 503, 1176
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1643
SfcI	CTRYAG	5 cut(s)	483, 687, 1071, 1330, 1435
SfoI	GGCGCC	1 cut(s)	1883
Sfr274I	CTCGAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	1486
SlaI	CTCGAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	83
SsiI	CCGC	2 cut(s)	255, 973
SspDI	GGCGCC	1 cut(s)	1881
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	7 cut(s)	33, 111, 167, 275, 1283, 1620, 1677
StyD4I	CCNGG	4 cut(s)	250, 387, 501, 1174
StyI	CCWWGG	2 cut(s)	699, 1830
TaaI	ACNGT	3 cut(s)	16, 124, 198
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	68, 807, 908, 1654
TfiI	GAWTC	6 cut(s)	187, 215, 235, 1080, 1651, 1860
Tru1I	TTAA	5 cut(s)	708, 1136, 1560, 1740, 1815
Tru9I	TTAA	5 cut(s)	708, 1136, 1560, 1740, 1815
TscAI	CASTG	3 cut(s)	696, 1597, 1609
TseFI	GTSAC	3 cut(s)	10, 1260, 1717
TseI	GCWGC	6 cut(s)	278, 485, 550, 932, 985, 1445
Tsp45I	GTSAC	3 cut(s)	10, 1260, 1717
TspDTI	ATGAA	9 cut(s)	449, 939, 1131, 1158, 1385, 1470, 1538, 1739, 1884
TspGWI	ACGGA	2 cut(s)	326, 380
TspRI	CASTG	3 cut(s)	696, 1597, 1609
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	1486
VspI	ATTAAT	2 cut(s)	1560, 1815
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	1293
XspI	CTAG	7 cut(s)	33, 111, 167, 275, 1283, 1620, 1677
Zsp2I	ATGCAT	1 cut(s)	1804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.