Rorug06G0231500

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005712
Physical Location & Seq
Reverse (-)
37250064 .. 37252997
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0231500.1

Sequence Viewer

Length: 1557 bp
ATGGAGAATAGTAGTCCACGGTCTGTGTCTTTTCGCACGCACCGAAGAGGCGAAAGGAGTGGTCTAAGCATGCTTAGTAAAGATGTTGAAGGTGGAGTTTTTCCAGGGAAGGTTACCCCAGATTCTGCCATGAAGATTGTTTGCAAGAAGGGCGTTATTCGATTGCTTCTTGTTGGTGTCATCTTGTGGGTGGTACTAATTCTCCTCGCAACTTTGTTCCATGTTTGGTCCTGCCACTCTTCTATCTCATTCTTATCAGCTATGTGCAACAAAAATAGCACGGTATTGGACATGTTACGCAATATGGGATTTGTAGCAAAACCACAACTGCAACACCGATGTCCAATTCCCGTTGCCAATGATCCTGATAAGATAGTTATACCAGAGGGGAGAACTCCCGATGAAATCGTCAAAAAGCTAACCTATGTTATGGAGGATGAGGCGGTATCTGACAAAACTCAGTCATCCCCACTATTTGGAGGACATGAAAGCTGGTCACAAAGAGAAGAGAGTTTTAGACTAAAACCAACCATGAAGGTGCACTGTGGTTTCATTCGAAATGGTGGTGGTGACATGATTCCTGCAGACATTGAATATGCTGAGAAATGTAGGTTTGTGGTTGCATCGGGCATTTTTGATGGTTATGATGTACCCCATCAACCTTCAAATTTGAGCCCCCGTTCTAAAAAGCTCTTCTGTTTTTTCATGGTGGTGGATGAGACGTCTCTTGAATTTATAAGTAAAAATGTTACTGTCAGAGAGGATAATAATGGGGGGAAATGGGTTGGCATTTGGCGTTTGGTTTTACTGAAGCATCCACCTTATGATGAACCAAGAAGGAATGGGAAGGTCCCCAAGATCTTGACCCACCGTTTATTCCCTAAGGCGCAGTACAGCATTTGGATTGATGGTAAAATGGAGCTCATAGTTGATCCATTGCTTATTCTGGAAAGATATTTATGGCGTGAGAAGAATACATTTGCCATTTCTCAGCACAAACATCATCACAGTATATATGAGGAGGCAGATGCAAACAAGCGGAGGAAACGATATGCTCGACCTCTTATTGATCTTCACATGAAGATTTACCGATATGAGGGCATGGAGCCATGGAGTCCGCAGAAGAAAACTATTAGTGATGTGCCAGAGGGAGCTATTATCATACGGGAGCATACTGCAATGAGTAACTTGTTTAGCTGCTTGTGGTTCAATGAGGTCGACCTCTTTACACCAAGGGACCAACTGAGTTTTGGTTATGTTCTGTACAGGTTAGGGGAATCGTTTAGGTTCTTTATGTTTCCAAACTGTGAGTACTATTCACTGTTTATTTTGCATCCACACATAAGGGAGCATTCCTCTCGCATAGAGTGGGTAACTAGTTGGAGTCAGCTTAAGGGTAACGGAACCATTAAGGATAAGGGTAAGGATTGGGACCAAGCTAATGCAAAAAACGGTTTGGTAGAGAGTAGGGGAGGCTTAGGGTTATGGACTCCTTATCCTGCAAATCTTGATTCAGTTATCCTGCCGCCTGTAGCAAGAACATCAAAAGCTGGCTGA

Protein Analysis

518

Amino Acids

59.35

Weight (kDa)

9.17

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 140 - 447 8.1e-132 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 737
AatII GACGTC 1 cut(s) 725
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 1218
AciI CCGC 4 cut(s) 443, 1039, 1118, 1526
AclWI GGATC 2 cut(s) 356, 926
AcsI RAATTY 2 cut(s) 667, 731
AcuI CTGAAG 1 cut(s) 830
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 5 cut(s) 195, 651, 893, 1265, 1313
AfiI CCNNNNNNNGG 2 cut(s) 476, 1096
AflII CTTAAG 1 cut(s) 1391
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 5 cut(s) 89, 593, 666, 731, 1210
AhlI ACTAGT 1 cut(s) 1376
AjnI CCWGG 1 cut(s) 103
Alw21I GWGCWC 2 cut(s) 543, 924
Alw26I GTCTC 2 cut(s) 713, 729
Alw44I GTGCAC 1 cut(s) 539
AlwI GGATC 2 cut(s) 356, 926
AlwNI CAGNNNCTG 1 cut(s) 125
ApaLI GTGCAC 1 cut(s) 539
ApeKI GCWGC 1 cut(s) 1197
ApoI RAATTY 2 cut(s) 667, 731
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 4 cut(s) 228, 850, 1237, 1432
AsuHPI GGTGA 1 cut(s) 581
AsuII TTCGAA 1 cut(s) 556
AvaII GGWCC 4 cut(s) 228, 850, 1237, 1432
AxyI CCTNAGG 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 543
BanII GRGCYC 2 cut(s) 677, 924
Bbv12I GWGCWC 2 cut(s) 543, 924
BbvI GCAGC 1 cut(s) 1184
BccI CCATC 3 cut(s) 632, 663, 902
BcgI CGANNNNNNTGC 2 cut(s) 1340, 1374
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 713, 729
BcuI ACTAGT 1 cut(s) 1376
BfaI CTAG 1 cut(s) 1377
BfmI CTRYAG 2 cut(s) 582, 1530
BfrI CTTAAG 1 cut(s) 1391
BglII AGATCT 1 cut(s) 858
BisI GCNGC 2 cut(s) 1198, 1526
BlsI GCNGC 2 cut(s) 1199, 1527
BmcAI AGTACT 1 cut(s) 1313
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 4 cut(s) 228, 850, 1237, 1432
BmgT120I GGNCC 4 cut(s) 228, 850, 1237, 1432
BmiI GGNNCC 5 cut(s) 852, 1107, 1238, 1405, 1433
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 4 cut(s) 632, 823, 1018, 1342
BplI GAGNNNNNCTC 2 cut(s) 1340, 1372
Bpu10I CCTNAGC 1 cut(s) 1477
Bpu14I TTCGAA 1 cut(s) 556
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 17, 104, 1109, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 1096
Bse21I CCTNAGG 1 cut(s) 882
Bse3DI GCAATG 2 cut(s) 935, 1185
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 4 cut(s) 17, 104, 1109, 1232
BseGI GGATG 5 cut(s) 442, 464, 721, 814, 1333
BseLI CCNNNNNNNGG 2 cut(s) 476, 1096
BseMI GCAATG 2 cut(s) 935, 1185
BseMII CTCAG 4 cut(s) 473, 591, 1004, 1235
BseRI GAGGAG 2 cut(s) 194, 1034
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 1 cut(s) 1184
BsiHKAI GWGCWC 2 cut(s) 543, 924
BslFI GGGAC 3 cut(s) 836, 1250, 1445
BslI CCNNNNNNNGG 2 cut(s) 476, 1096
BsmAI GTCTC 2 cut(s) 713, 729
BsmBI CGTCTC 2 cut(s) 713, 729
BsmFI GGGAC 3 cut(s) 836, 1250, 1445
BsmI GAATGC 1 cut(s) 1351
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 3 cut(s) 543, 677, 924
Bsp1407I TGTACA 1 cut(s) 1263
Bsp143I GATC 4 cut(s) 361, 858, 931, 1069
Bsp19I CCATGG 1 cut(s) 1109
BspACI CCGC 4 cut(s) 443, 1039, 1118, 1526
BspCNI CTCAG 4 cut(s) 472, 592, 1003, 1236
BspLI GGNNCC 5 cut(s) 852, 1107, 1238, 1405, 1433
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 2 cut(s) 356, 926
BspQI GCTCTTC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 556
BspTI CTTAAG 1 cut(s) 1391
BsrDI GCAATG 2 cut(s) 935, 1185
BsrGI TGTACA 1 cut(s) 1263
BssECI CCNNGG 4 cut(s) 17, 104, 1109, 1232
BssMI GATC 4 cut(s) 361, 858, 931, 1069
BssNI GRCGYC 1 cut(s) 722
BssT1I CCWWGG 2 cut(s) 1109, 1232
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 9 cut(s) 21, 283, 545, 754, 872, 1010, 1307, 1323, 1454
Bst6I CTCTTC 4 cut(s) 40, 244, 501, 698
BstACI GRCGYC 1 cut(s) 722
BstAFI CTTAAG 1 cut(s) 1391
BstAUI TGTACA 1 cut(s) 1263
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 3 cut(s) 38, 71, 1552
BstDEI CTNAG 8 cut(s) 65, 74, 459, 600, 882, 990, 1244, 1477
BstDSI CCRYGG 2 cut(s) 17, 1109
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 5 cut(s) 442, 464, 721, 814, 1333
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 4 cut(s) 364, 861, 934, 1072
BstMAI GTCTC 2 cut(s) 713, 729
BstMBI GATC 4 cut(s) 361, 858, 931, 1069
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 2 cut(s) 73, 295
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 2 cut(s) 582, 1530
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 1184
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
Bsu36I CCTNAGG 1 cut(s) 882
BtgI CCRYGG 2 cut(s) 17, 1109
BtsCI GGATG 5 cut(s) 442, 464, 721, 814, 1333
BtsIMutI CAGTG 2 cut(s) 541, 1319
Cac8I GCNNGC 3 cut(s) 38, 71, 1552
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 4 cut(s) 228, 850, 1237, 1432
Csp6I GTAC 5 cut(s) 194, 650, 892, 1264, 1312
CviQI GTAC 5 cut(s) 194, 650, 892, 1264, 1312
DdeI CTNAG 8 cut(s) 65, 74, 459, 600, 882, 990, 1244, 1477
DpnI GATC 4 cut(s) 363, 860, 933, 1071
DpnII GATC 4 cut(s) 361, 858, 931, 1069
Eam1104I CTCTTC 4 cut(s) 40, 244, 501, 698
EarI CTCTTC 4 cut(s) 40, 244, 501, 698
Ecl136II GAGCTC 1 cut(s) 922
Eco130I CCWWGG 2 cut(s) 1109, 1232
Eco24I GRGCYC 2 cut(s) 677, 924
Eco47I GGWCC 4 cut(s) 228, 850, 1237, 1432
Eco53kI GAGCTC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 830
Eco81I CCTNAGG 1 cut(s) 882
Eco91I GGTNACC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 922
EcoO109I RGGNCCY 1 cut(s) 850
EcoO65I GGTNACC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 1109, 1232
EcoT38I GRGCYC 2 cut(s) 677, 924
ErhI CCWWGG 2 cut(s) 1109, 1232
Esp3I CGTCTC 2 cut(s) 713, 729
FaqI GGGAC 3 cut(s) 836, 1250, 1445
FblI GTMKAC 1 cut(s) 1218
Fnu4HI GCNGC 2 cut(s) 1198, 1526
FokI GGATG 5 cut(s) 449, 451, 728, 801, 1320
FriOI GRGCYC 2 cut(s) 677, 924
Fsp4HI GCNGC 2 cut(s) 1198, 1526
FspBI CTAG 1 cut(s) 1377
GlaI GCGC 1 cut(s) 888
GluI GCNGC 2 cut(s) 1198, 1526
HhaI GCGC 1 cut(s) 889
Hin1I GRCGYC 1 cut(s) 722
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 1 cut(s) 1219
HindII GTYRAC 1 cut(s) 1219
HinfI GANTC 7 cut(s) 122, 577, 1114, 1277, 1384, 1489, 1511
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 17, 541, 1219
Hpy188I TCNGA 2 cut(s) 451, 758
Hpy188III TCNNGA 6 cut(s) 365, 398, 728, 862, 947, 1508
Hpy8I GTNNAC 3 cut(s) 17, 541, 1219
HpyAV CCTTC 7 cut(s) 83, 103, 142, 529, 672, 831, 841
HpyCH4III ACNGT 9 cut(s) 21, 283, 545, 754, 872, 1010, 1307, 1323, 1454
HpyCH4IV ACGT 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 8 cut(s) 65, 74, 459, 600, 882, 990, 1244, 1477
HpySE526I ACGT 1 cut(s) 722
Hsp92I GRCGYC 1 cut(s) 722
HspAI GCGC 1 cut(s) 887
Kzo9I GATC 4 cut(s) 361, 858, 931, 1069
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 5 cut(s) 919, 1105, 1151, 1168, 1348
Lsp1109I GCAGC 1 cut(s) 1184
LweI GCATC 4 cut(s) 632, 823, 1018, 1342
MaeI CTAG 1 cut(s) 1377
MaeII ACGT 1 cut(s) 722
MaeIII GTNAC 8 cut(s) 112, 294, 495, 569, 748, 1184, 1372, 1397
MalI GATC 4 cut(s) 363, 860, 933, 1071
MboI GATC 4 cut(s) 361, 858, 931, 1069
MboII GAAGA 9 cut(s) 57, 145, 231, 518, 685, 982, 1064, 1093, 1135
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 3 cut(s) 543, 677, 924
MluCI AATT 4 cut(s) 198, 345, 667, 731
MlyI GAGTC 3 cut(s) 1123, 1393, 1483
MmeI TCCRAC 1 cut(s) 1361
MseI TTAA 2 cut(s) 1392, 1410
MslI CAYNNNNRTG 2 cut(s) 536, 710
MspCI CTTAAG 1 cut(s) 1391
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 1351
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 1109
NdeII GATC 4 cut(s) 361, 858, 931, 1069
NlaIV GGNNCC 5 cut(s) 852, 1107, 1238, 1405, 1433
NmuCI GTSAC 2 cut(s) 495, 569
NspI RCATGY 2 cut(s) 73, 295
NspV TTCGAA 1 cut(s) 556
PaeI GCATGC 1 cut(s) 73
PciI ACATGT 1 cut(s) 291
PciSI GCTCTTC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 1054
PctI GAATGC 1 cut(s) 1351
PfeI GAWTC 4 cut(s) 122, 577, 1277, 1511
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 2 cut(s) 1199, 1527
PleI GAGTC 3 cut(s) 1122, 1392, 1483
PpsI GAGTC 3 cut(s) 1122, 1392, 1483
PpuMI RGGWCCY 1 cut(s) 850
PscI ACATGT 1 cut(s) 291
PsiI TTATAA 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 924
Psp5II RGGWCCY 1 cut(s) 850
Psp6I CCWGG 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 5 cut(s) 852, 1107, 1238, 1405, 1433
PspPI GGNCC 4 cut(s) 228, 850, 1237, 1432
PspPPI RGGWCCY 1 cut(s) 850
PstI CTGCAG 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 858
RsaI GTAC 5 cut(s) 195, 651, 893, 1265, 1313
RsaNI GTAC 5 cut(s) 194, 650, 892, 1264, 1312
RseI CAYNNNNRTG 2 cut(s) 536, 710
SacI GAGCTC 1 cut(s) 924
SalI GTCGAC 1 cut(s) 1217
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 2 cut(s) 1392, 1410
SatI GCNGC 2 cut(s) 1198, 1526
Sau3AI GATC 4 cut(s) 361, 858, 931, 1069
Sau96I GGNCC 4 cut(s) 228, 850, 1237, 1432
ScaI AGTACT 1 cut(s) 1313
SchI GAGTC 3 cut(s) 1123, 1393, 1483
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 3 cut(s) 543, 677, 924
SfaNI GCATC 4 cut(s) 632, 823, 1018, 1342
SfcI CTRYAG 2 cut(s) 582, 1530
SfuI TTCGAA 1 cut(s) 556
SinI GGWCC 4 cut(s) 228, 850, 1237, 1432
SmiMI CAYNNNNRTG 2 cut(s) 536, 710
SmlI CTYRAG 1 cut(s) 1391
SmoI CTYRAG 1 cut(s) 1391
SpeI ACTAGT 1 cut(s) 1376
SphI GCATGC 1 cut(s) 73
Sse9I AATT 4 cut(s) 198, 345, 667, 731
SsiI CCGC 4 cut(s) 443, 1039, 1118, 1526
SspMI CTAG 1 cut(s) 1377
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 1109, 1232
TaaI ACNGT 9 cut(s) 21, 283, 545, 754, 872, 1010, 1307, 1323, 1454
TaiI ACGT 1 cut(s) 725
TaqI TCGA 4 cut(s) 160, 556, 1057, 1218
TasI AATT 4 cut(s) 198, 345, 667, 731
TatI WGTACW 3 cut(s) 891, 1263, 1311
TauI GCSGC 1 cut(s) 1528
TfiI GAWTC 4 cut(s) 122, 577, 1277, 1511
Tru1I TTAA 2 cut(s) 1392, 1410
Tru9I TTAA 2 cut(s) 1392, 1410
TscAI CASTG 2 cut(s) 548, 1326
TseFI GTSAC 2 cut(s) 495, 569
TseI GCWGC 1 cut(s) 1197
Tsp45I GTSAC 2 cut(s) 495, 569
TspDTI ATGAA 8 cut(s) 146, 417, 501, 541, 548, 694, 843, 1094
TspGWI ACGGA 1 cut(s) 1416
TspRI CASTG 2 cut(s) 548, 1326
Van91I CCANNNNNTGG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 1391
VneI GTGCAC 1 cut(s) 539
VpaK11BI GGWCC 4 cut(s) 228, 850, 1237, 1432
XapI RAATTY 2 cut(s) 667, 731
XceI RCATGY 2 cut(s) 73, 295
XcmI CCANNNNNNNNNTGG 1 cut(s) 1247
XmiI GTMKAC 1 cut(s) 1218
XspI CTAG 1 cut(s) 1377
ZraI GACGTC 1 cut(s) 723
ZrmI AGTACT 1 cut(s) 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.