Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005712

Physical Location & Seq

Genomic Coordinates Forward (+)

14170244 .. 14175730

Gene Structure 5487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGGTGTTGTCACCGTTGGTGAATTGAAGCCTAGCATTTCAGGGAAGAGGTCTTTTCGTCCAAGCTCAAGTATAAGGCATGCCACAGAATGGCCAATCTCTGATGTTTCTAGTGATCTTACTGTGGAGATAGGAGCATCAAGCTTTGCCCTTCACAAGTTCCCTCTAGTTTCTCGGAGTGGAAAGATTCGGAAACTGTTGCTTGAAGCAAAAGATTCAAAAGTTTCACGTGTGATTCTTCCATCTGTTCCGGGCGGAGCAGAGGCATTTGAGCTAGCTGCAAAGTTCTGTTATGGCCATAATATTGAGATCACACAAGCAAATGTTGCCTTGCTCCGTTGCACAACTCACTTTCTTGAAATGACGGAAGAGTATGCTGAGAAGAACCTGGAAACAAGAACTGAAGCTTATCTAAAGGATATGGTGTTCCCAAACATATCAAAATCAATAGCAGTTCTTCATCGTTGCGAAACACTCTTGCCTGCAGCAGAAGAAACCAACCTGGTTAGCAGGCTCATCAATGCAATTGCAAACAATGCGTGCAAAGAGCAGCTCACCTCTGGCTTACTGAAACTTGACCACAACTTTCCTTCAAAAGTAGCTACTACGGAACCTGAAACGCCCTCGGATTGGTGGGGAAAAGCGCTTTCGGTGCTTAGTCTTGACTTCTTCCAGAGGGTTTTATCTGCAGTGAAAACCAAGGGTCTTAAACAGGATATGATCAGCAAAATTTTGATAAATTATGCCCATAACTCTCTTCAAGGTCTTGTTGTAAGAGATGCGCAATTGGTCAAAGGAAGTCTGTTCGATTTAGAACTGCAAAAGAAACAAAGGGTCATTGTGGAAGCTATTGTTAGTTTACTACCAACACAATCAAGGAAGAGTCCAGTTCCAATGGCATTTCTTTCGAGTTTGCTGAAAACTGCAATTGCAGCATCAGCATCCACTTCATGCAGATCCGATTTGGAGAGGCGGATTGGTTTGCAGCTGGATCAGGCAATTCTTGAAGACATCCTCATTCCTACAAACTCACATGGAAACAACCACAGCACAATTTATGATGCCGACACTATAGTGAGGATCTTCTCCATATTTTTGAACTTGGATGAGGATGATGAAGATGATACTAATCTGTTAAGAGATGAAAGTCAAATGGTTTATGATTTCGACAGCCCTGGATCTCCTAAACAAAGTTCAATCTTGAAGGTTCACCCAAACATGAAGGACTCTGAAAGGTACCGGCTTTGCAAAACCATAGACTGCCAGAAACTATCCCAAGAAGCCTGCAGTCATGCAGCACAGAATGAAAGGCTACCGGTACAGATGGCAGTTCAGGTCCTATACTTTGAGCAAATCAGGCTGAGGAATGCAATGAATGGTGGCCACAATCAGTTCTTCTTTGGCGCAATTAATGGCACTCAATTCCCTCAAAGATCAGGCAGTGGTGCTGGCAGTGGAGCCATTTCCCCTAGAGACAACTACGCATCAGTTCGGAGAGAGAATCGAGAGCTGAAGCTTGAAGTCGCTAGAATGAGAATGAGGCTGACAGACTTGGAAAAAGATCATGTCTCTATGAAGCAAGAGCTTGTTAAGACACACCCTGCAAATAAGTTGTTCAAATCCTTCACCAAAAAATTGGGGAAGATCAATGCATTGTTCCGGATTAATAGTATCAAGACCTTGGGGGGTAAGGCGCATTCGGAGAGCAGATTCCCGTTTCAGAAGCGAAGGCGCCATTCAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

582

Amino Acids

65.0

Weight (kDa)

9.26

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	210 - 376	1.8e-44	NPH3 family
NPH3	PF03000	401 - 429	4.1e-09	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03010 AT1G03010 AT1G03010
fragaria_vesca	FvH4_2g24980 FvH4_2g24980
malus_domestica	MD03G1278600.v1.1 MD03G1278700.v1.1 MD11G1301000.v1.1
prunus_persica	Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1
pyrus_communis	pycom03g22180 pycom11g26390
rosa_chinensis	RchiOBHm_Chr6g0292951
rosa_laevigata	RLG00000011979
rosa_roxburghii	Rroxscaffold_7G00174540
rosa_rugosa	Rorug06G0231100 Rorug06G0231200 Rorug06G0231300 Rorug06G0231400 Rorug06G0231400 Rorug06G0231400 Rorug06G0231500
rosa_samantha	Rh6AG344100 Rh6BG351500 Rh6CG358600 Rh6DG344300
rosa_wichuraiana	Rw6G030040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	783
Acc65I	GGTACC	1 cut(s)	1236
AccB1I	GGYRCC	2 cut(s)	1236, 1731
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	1659
AciI	CCGC	2 cut(s)	255, 973
AclWI	GGATC	4 cut(s)	951, 999, 1088, 1186
AcoI	YGGCCR	3 cut(s)	92, 295, 1381
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	2 cut(s)	423, 1532
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	1732
AfaI	GTAC	2 cut(s)	1238, 1320
AfeI	AGCGCT	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	90, 630
AflIII	ACRYGT	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	1315
AjnI	CCWGG	3 cut(s)	387, 501, 1174
AleI	CACNNNNGTG	1 cut(s)	1073
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
Alw26I	GTCTC	2 cut(s)	1467, 1573
AlwI	GGATC	4 cut(s)	951, 999, 1088, 1186
Aor13HI	TCCGGA	1 cut(s)	1659
Aor51HI	AGCGCT	1 cut(s)	645
AoxI	GGCC	3 cut(s)	92, 295, 1381
ApeKI	GCWGC	6 cut(s)	278, 485, 550, 932, 985, 1295
ApoI	RAATTY	1 cut(s)	729
AseI	ATTAAT	2 cut(s)	1410, 1665
AsiGI	ACCGGT	1 cut(s)	1315
Asp718I	GGTACC	1 cut(s)	1236
AspLEI	GCGC	5 cut(s)	646, 784, 1406, 1696, 1734
AspS9I	GGNCC	1 cut(s)	1336
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	5 cut(s)	4, 32, 547, 1202, 1618
AsuNHI	GCTAGC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	1336
BalI	TGGCCA	3 cut(s)	94, 297, 1383
BanI	GGYRCC	2 cut(s)	1236, 1731
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	1014
BbvCI	CCTCAGC	1 cut(s)	1361
BbvI	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1307
BccI	CCATC	2 cut(s)	250, 1318
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	3 cut(s)	389, 503, 1176
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	1467, 1573
BfaI	CTAG	6 cut(s)	33, 111, 167, 275, 1470, 1527
BfmI	CTRYAG	4 cut(s)	483, 687, 1071, 1285
BfoI	RGCGCY	2 cut(s)	647, 1735
BisI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1296
BlsI	GCNGC	6 cut(s)	280, 487, 552, 934, 987, 1297
Bme1390I	CCNGG	4 cut(s)	252, 389, 503, 1176
Bme18I	GGWCC	1 cut(s)	1336
BmgT120I	GGNCC	1 cut(s)	1336
BmiI	GGNNCC	4 cut(s)	612, 1238, 1459, 1733
BmrFI	CCNGG	4 cut(s)	252, 389, 503, 1176
BmsI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1493
BmtI	GCTAGC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	1014
Bpu10I	CCTNAGC	1 cut(s)	1361
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	1128
BsaHI	GRCGYC	1 cut(s)	1732
BsaJI	CCNNGG	4 cut(s)	624, 699, 1174, 1680
BsaWI	WCCGGW	2 cut(s)	1315, 1659
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 630
Bse118I	RCCGGY	2 cut(s)	1239, 1315
Bse1I	ACTGG	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	1377
Bse8I	GATNNNNATC	1 cut(s)	1128
BseAI	TCCGGA	1 cut(s)	1659
BseBI	CCWGG	3 cut(s)	389, 503, 1176
BseDI	CCNNGG	4 cut(s)	624, 699, 1174, 1680
BseGI	GGATG	4 cut(s)	941, 1011, 1111, 1117
BseJI	GATNNNNATC	1 cut(s)	1128
BseLI	CCNNNNNNNGG	2 cut(s)	90, 630
BseMI	GCAATG	1 cut(s)	1377
BseMII	CTCAG	2 cut(s)	369, 1352
BseNI	ACTGG	1 cut(s)	887
BseXI	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1307
BshFI	GGCC	3 cut(s)	94, 297, 1383
BshNI	GGYRCC	2 cut(s)	1236, 1731
BshTI	ACCGGT	1 cut(s)	1315
BsiSI	CCGG	4 cut(s)	251, 1240, 1316, 1660
BslI	CCNNNNNNNGG	2 cut(s)	90, 630
BsmAI	GTCTC	2 cut(s)	1467, 1573
BsmI	GAATGC	2 cut(s)	1372, 1696
BsnI	GGCC	3 cut(s)	94, 297, 1383
Bsp13I	TCCGGA	1 cut(s)	1659
BspACI	CCGC	2 cut(s)	255, 973
BspANI	GGCC	3 cut(s)	94, 297, 1383
BspCNI	CTCAG	2 cut(s)	370, 1353
BspEI	TCCGGA	1 cut(s)	1659
BspHI	TCATGA	1 cut(s)	1745
BspLI	GGNNCC	4 cut(s)	612, 1238, 1459, 1733
BspMAI	CTGCAG	3 cut(s)	487, 691, 1289
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	4 cut(s)	951, 999, 1088, 1186
BspT107I	GGYRCC	2 cut(s)	1236, 1731
BsrDI	GCAATG	1 cut(s)	1377
BsrFI	RCCGGY	2 cut(s)	1239, 1315
BsrI	ACTGG	1 cut(s)	887
BssAI	RCCGGY	2 cut(s)	1239, 1315
BssECI	CCNNGG	4 cut(s)	624, 699, 1174, 1680
BssNI	GRCGYC	1 cut(s)	1732
BssT1I	CCWWGG	2 cut(s)	699, 1680
Bst2UI	CCWGG	3 cut(s)	389, 503, 1176
Bst4CI	ACNGT	3 cut(s)	16, 124, 198
Bst6I	CTCTTC	4 cut(s)	41, 363, 762, 875
BstACI	GRCGYC	1 cut(s)	1732
BstAPI	GCANNNNNTGC	2 cut(s)	326, 536
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	7 cut(s)	81, 276, 483, 512, 541, 1285, 1450
BstDEI	CTNAG	3 cut(s)	378, 656, 1361
BstF5I	GGATG	4 cut(s)	941, 1011, 1111, 1117
BstH2I	RGCGCY	2 cut(s)	647, 1735
BstHHI	GCGC	5 cut(s)	646, 784, 1406, 1696, 1734
BstMAI	GTCTC	2 cut(s)	1467, 1573
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 536, 652, 932, 938, 1357
BstNI	CCWGG	3 cut(s)	389, 503, 1176
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	250, 387, 501, 1174
BstSFI	CTRYAG	4 cut(s)	483, 687, 1071, 1285
BstV1I	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1307
BstV2I	GAAGAC	1 cut(s)	1014
BstX2I	RGATCY	3 cut(s)	956, 1080, 1178
BstXI	CCANNNNNNTGG	1 cut(s)	1636
BstYI	RGATCY	3 cut(s)	956, 1080, 1178
BsuRI	GGCC	3 cut(s)	94, 297, 1383
BtsCI	GGATG	4 cut(s)	941, 1011, 1111, 1117
BtsI	GCAGTG	3 cut(s)	696, 1447, 1459
BtsIMutI	CAGTG	3 cut(s)	696, 1447, 1459
Cac8I	GCNNGC	7 cut(s)	81, 276, 483, 512, 541, 1285, 1450
CciI	TCATGA	1 cut(s)	1745
CfoI	GCGC	5 cut(s)	646, 784, 1406, 1696, 1734
Cfr10I	RCCGGY	2 cut(s)	1239, 1315
Cfr13I	GGNCC	1 cut(s)	1336
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	1237, 1319
CspAI	ACCGGT	1 cut(s)	1315
CviAII	CATG	7 cut(s)	80, 951, 1034, 1219, 1292, 1565, 1746
CviQI	GTAC	2 cut(s)	1237, 1319
DdeI	CTNAG	3 cut(s)	378, 656, 1361
DinI	GGCGCC	1 cut(s)	1733
EaeI	YGGCCR	3 cut(s)	92, 295, 1381
Eam1104I	CTCTTC	4 cut(s)	41, 363, 762, 875
EarI	CTCTTC	4 cut(s)	41, 363, 762, 875
EciI	GGCGGA	2 cut(s)	270, 988
Eco130I	CCWWGG	2 cut(s)	699, 1680
Eco47I	GGWCC	1 cut(s)	1336
Eco47III	AGCGCT	1 cut(s)	645
Eco57I	CTGAAG	2 cut(s)	423, 1532
Eco72I	CACGTG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	1336
EcoRII	CCWGG	3 cut(s)	387, 501, 1174
EcoT14I	CCWWGG	2 cut(s)	699, 1680
EcoT22I	ATGCAT	1 cut(s)	1654
EgeI	GGCGCC	1 cut(s)	1733
EheI	GGCGCC	1 cut(s)	1733
ErhI	CCWWGG	2 cut(s)	699, 1680
FaeI	CATG	7 cut(s)	83, 954, 1037, 1222, 1295, 1568, 1749
FatI	CATG	7 cut(s)	79, 950, 1033, 1218, 1291, 1564, 1745
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1296
FokI	GGATG	4 cut(s)	928, 998, 1118, 1124
Fsp4HI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1296
FspBI	CTAG	6 cut(s)	33, 111, 167, 275, 1470, 1527
FspI	TGCGCA	1 cut(s)	783
GlaI	GCGC	5 cut(s)	645, 783, 1405, 1695, 1733
GluI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1296
HaeII	RGCGCY	2 cut(s)	647, 1735
HaeIII	GGCC	3 cut(s)	94, 297, 1383
HapII	CCGG	4 cut(s)	251, 1240, 1316, 1660
HhaI	GCGC	5 cut(s)	646, 784, 1406, 1696, 1734
Hin1I	GRCGYC	1 cut(s)	1732
Hin1II	CATG	7 cut(s)	83, 954, 1037, 1222, 1295, 1568, 1749
Hin6I	GCGC	5 cut(s)	644, 782, 1404, 1694, 1732
HinP1I	GCGC	5 cut(s)	644, 782, 1404, 1694, 1732
HindIII	AAGCTT	3 cut(s)	142, 405, 1514
HinfI	GANTC	7 cut(s)	187, 215, 235, 883, 1226, 1501, 1710
HpaII	CCGG	4 cut(s)	251, 1240, 1316, 1660
HphI	GGTGA	5 cut(s)	4, 32, 547, 1202, 1618
Hpy166II	GTNNAC	2 cut(s)	860, 1210
Hpy188I	TCNGA	9 cut(s)	103, 177, 192, 628, 961, 1231, 1494, 1702, 1722
Hpy188III	TCNNGA	9 cut(s)	356, 662, 673, 1004, 1201, 1505, 1660, 1675, 1746
Hpy8I	GTNNAC	2 cut(s)	860, 1210
HpyAV	CCTTC	6 cut(s)	161, 600, 1198, 1216, 1633, 1722
HpyCH4III	ACNGT	3 cut(s)	16, 124, 198
HpyCH4IV	ACGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 536, 652, 932, 938, 1357
HpyF3I	CTNAG	3 cut(s)	378, 656, 1361
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	1732
Hsp92II	CATG	7 cut(s)	83, 954, 1037, 1222, 1295, 1568, 1749
HspAI	GCGC	5 cut(s)	644, 782, 1404, 1694, 1732
KasI	GGCGCC	1 cut(s)	1731
Kpn2I	TCCGGA	1 cut(s)	1659
KpnI	GGTACC	1 cut(s)	1240
Ksp22I	TGATCA	1 cut(s)	720
LmnI	GCTCC	4 cut(s)	134, 257, 339, 1457
Lsp1109I	GCAGC	6 cut(s)	265, 497, 562, 944, 997, 1307
LweI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1493
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	6 cut(s)	33, 111, 167, 275, 1470, 1527
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	10
MfeI	CAATTG	3 cut(s)	525, 785, 927
MflI	RGATCY	3 cut(s)	956, 1080, 1178
MlsI	TGGCCA	3 cut(s)	94, 297, 1383
MluNI	TGGCCA	3 cut(s)	94, 297, 1383
Mly113I	GGCGCC	1 cut(s)	1732
MlyI	GAGTC	2 cut(s)	892, 1220
Mox20I	TGGCCA	3 cut(s)	94, 297, 1383
Mph1103I	ATGCAT	1 cut(s)	1654
MroI	TCCGGA	1 cut(s)	1659
MscI	TGGCCA	3 cut(s)	94, 297, 1383
MseI	TTAA	5 cut(s)	708, 1136, 1410, 1590, 1665
MslI	CAYNNNNRTG	1 cut(s)	1073
Msp20I	TGGCCA	3 cut(s)	94, 297, 1383
MspA1I	CMGCKG	1 cut(s)	988
MspI	CCGG	4 cut(s)	251, 1240, 1316, 1660
MspR9I	CCNGG	4 cut(s)	252, 389, 503, 1176
MunI	CAATTG	3 cut(s)	525, 785, 927
Mva1269I	GAATGC	2 cut(s)	1372, 1696
MvaI	CCWGG	3 cut(s)	389, 503, 1176
MwoI	GCNNNNNNNGC	6 cut(s)	326, 536, 652, 932, 938, 1357
NarI	GGCGCC	1 cut(s)	1732
NciI	CCSGG	1 cut(s)	252
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	7 cut(s)	83, 954, 1037, 1222, 1295, 1568, 1749
NlaIV	GGNNCC	4 cut(s)	612, 1238, 1459, 1733
NmuCI	GTSAC	1 cut(s)	10
NsbI	TGCGCA	1 cut(s)	783
NsiI	ATGCAT	1 cut(s)	1654
NspI	RCATGY	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	1073
PaeI	GCATGC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	1745
PctI	GAATGC	2 cut(s)	1372, 1696
PfeI	GAWTC	5 cut(s)	187, 215, 235, 1501, 1710
PflMI	CCANNNNNTGG	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	1315
PkrI	GCNGC	6 cut(s)	280, 487, 552, 934, 987, 1297
PleI	GAGTC	2 cut(s)	891, 1220
PluTI	GGCGCC	1 cut(s)	1735
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	891, 1220
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	1336
PshBI	ATTAAT	2 cut(s)	1410, 1665
Psp5II	RGGWCCY	1 cut(s)	1336
Psp6I	CCWGG	3 cut(s)	387, 501, 1174
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	387, 501, 1174
PspN4I	GGNNCC	4 cut(s)	612, 1238, 1459, 1733
PspPI	GGNCC	1 cut(s)	1336
PspPPI	RGGWCCY	1 cut(s)	1336
PstI	CTGCAG	3 cut(s)	487, 691, 1289
PsuI	RGATCY	3 cut(s)	956, 1080, 1178
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	2 cut(s)	1238, 1320
RsaNI	GTAC	2 cut(s)	1237, 1319
RseI	CAYNNNNRTG	1 cut(s)	1073
SaqAI	TTAA	5 cut(s)	708, 1136, 1410, 1590, 1665
SatI	GCNGC	6 cut(s)	279, 486, 551, 933, 986, 1296
Sau96I	GGNCC	1 cut(s)	1336
SchI	GAGTC	2 cut(s)	892, 1220
ScrFI	CCNGG	4 cut(s)	252, 389, 503, 1176
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	6 cut(s)	146, 769, 944, 950, 1051, 1493
SfcI	CTRYAG	4 cut(s)	483, 687, 1071, 1285
SfoI	GGCGCC	1 cut(s)	1733
SinI	GGWCC	1 cut(s)	1336
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	83
SsiI	CCGC	2 cut(s)	255, 973
SspDI	GGCGCC	1 cut(s)	1731
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	6 cut(s)	33, 111, 167, 275, 1470, 1527
StyD4I	CCNGG	4 cut(s)	250, 387, 501, 1174
StyI	CCWWGG	2 cut(s)	699, 1680
TaaI	ACNGT	3 cut(s)	16, 124, 198
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	807, 908, 1167, 1504
TfiI	GAWTC	5 cut(s)	187, 215, 235, 1501, 1710
Tru1I	TTAA	5 cut(s)	708, 1136, 1410, 1590, 1665
Tru9I	TTAA	5 cut(s)	708, 1136, 1410, 1590, 1665
TscAI	CASTG	3 cut(s)	696, 1447, 1459
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	6 cut(s)	278, 485, 550, 932, 985, 1295
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	9 cut(s)	449, 939, 1131, 1158, 1235, 1320, 1388, 1589, 1734
TspGWI	ACGGA	3 cut(s)	326, 380, 623
TspRI	CASTG	3 cut(s)	696, 1447, 1459
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	1336
VspI	ATTAAT	2 cut(s)	1410, 1665
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	6 cut(s)	33, 111, 167, 275, 1470, 1527
Zsp2I	ATGCAT	1 cut(s)	1654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.