Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005712

Physical Location & Seq

Genomic Coordinates Reverse (-)

54526280 .. 54530049

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG344100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGTTTGCAAACATCAACAACATGCCAATCTCTGATGTTTCTAGTGATCTTACTGTGGAGATAGGAGCATCAAGCTTTGCCCTTCACAAGTTCCCTCTAGTTTCTCGGAGTGGAAAGATTCGGAAACTGTTGCTTGAAGCAAAAGATTCAAAAGTTTCACGTGTGATTCTTCCATCTGTTCCGGGCGGAGCAGAGGCATTTGAGCTAGCTGCAAAGTTCTGTTATGGCCATAATATTGAGATCACACAAGCAAATGTTGCCTTGCTCCGTTGCACAGCTCACTTTCTTGAAATGACGGAAGAGTATGCTGAGAAGAGCCTGGAAACAAGAACTGAAGCTTATCTAAAGGATATGGTGTTCCCAAACATATCAAAATCAATAGCAGTTCTTCATCGTTGCGAAACACTCTTGCCTGCAGCAGAAGAAACCAACCTGGTTAGCAGGCTCATCAATGCAATTGCAAACAATGCGTGCAAAGAGCAGCTCACCTCTGGCTTACTGAAACTTGACCACAACTTTCCTTCAAAAGTAGCTACTATGGAACCTGAAACGCCCTCGGATTGGTGGGGAAAAGCGCTTTCGGTGCTTAGTCTTGACTTCTTCCAGAGGGTTTTATCTGCAGTGAAAACCAAGGGTCTTAAACAGGATATGATCAGCAAAATTTTGATAAATTACGCCCATAACTCTCTTCAAGGTCTTGTTGTAAGGGATGCGCAATTGGTCAAAGGAAATCTCTTCGATTTAGAACTGCAAAAGAAACAAAGGGTCATTGTTGAAGCTATTGTTAGTTTACTACCAACACAATCAAGGAAGAGTCCAGTTCCAATGGCATTTCTTTCGAGTTTGTTGAAAACTGCAATTGCAGCATCAGCATCCACTTCATGCAGATCTGATTTGGAGAGGCGGATTGGTCTGCAGCTGGATCAGGCAATTCTTGAAGACATCCTCATTCCTACAAACTCACATGGAAACAACCACAGCACAATTTATGATGCCGACACTATAGTGAGAATCTTCTCCATATTTTTGAACTTGGATGAGGATGATGAAGATGATACTAATCTGTTAAGAGATGAAAGTCAAATGGTTTATGATTTTGACAGCCCTGGATCTCCTAAACAAAGTTCAATCTTGAAGGTCTCTAAGTTACTGGACAATTATCTTGCCGAAGTTGCATTGGACTCAAACTTGTCACCATCAAAGTTCACAGCTCTAGCAGAACTACTTCCAGACCATGCACGAATAGTAAGTGATGGACTCTACAGAGCTGTGGATATCTTCCTCAAAGTTCACCCAAACATGAAGGACTCTGAAAGGTACCGGCTTTGCAAAACCATAGACTGCCAGAAACTATCCCAAGAAGCCTGCAGTCATGCAGCGCAGAATGAAAGGCTACCGGTACAGATGGCAGTTCAGGTCCTATACTTTGAGCAAATCAGGCTGAGGAATGCAATGAATGGTGGCCACAATCAGTTCTTCTTTGGCGCAATTAATGGCACTCAATTCCCTCAAAGATCAGGCAGTGGTGCTGGCAGTGGAGCCATTTCCCCTAGAGACAACTACGCATCAGTTCGGAGAGAGAATCGAGAGCTGAAGCTTGAAGTCGCTAGAATGAGAATGAGGCTGACAGACTTGGAAAAAGATCATGTCTCTATGAAGCAAGAGCTTGTTAAGACACACCCTGCAAATAAGTTGTTCAAATCCTTCACCAAAAAATTGGGGAAGATCAATGCATTGTTCCGGATTAATAGTATCAAGACCTTGGGGGGTAAGGCGCATTCGGAGAGCAGATTCCCGTTTCAGAAGCGAAGGCGCCATTCAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

609

Amino Acids

68.03

Weight (kDa)

8.94

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	14 - 100	2.7e-06	BTB/POZ domain
NPH3	PF03000	187 - 456	1.1e-89	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03010 AT1G03010 AT1G03010
fragaria_vesca	FvH4_2g24980 FvH4_2g24980
malus_domestica	MD03G1278600.v1.1 MD03G1278700.v1.1 MD11G1301000.v1.1
prunus_persica	Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1
pyrus_communis	pycom03g22180 pycom11g26390
rosa_chinensis	RchiOBHm_Chr6g0292951
rosa_laevigata	RLG00000011979
rosa_roxburghii	Rroxscaffold_7G00174540
rosa_rugosa	Rorug06G0231100 Rorug06G0231200 Rorug06G0231300 Rorug06G0231400 Rorug06G0231400 Rorug06G0231400 Rorug06G0231500
rosa_samantha	Rh6AG344100 Rh6BG351500 Rh6CG358600 Rh6DG344300
rosa_wichuraiana	Rw6G030040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	714
Acc65I	GGTACC	1 cut(s)	1317
AccB1I	GGYRCC	2 cut(s)	1317, 1812
AccIII	TCCGGA	1 cut(s)	1740
AciI	CCGC	2 cut(s)	186, 904
AclWI	GGATC	2 cut(s)	930, 1117
AcoI	YGGCCR	2 cut(s)	226, 1462
AcsI	RAATTY	1 cut(s)	660
AcuI	CTGAAG	2 cut(s)	354, 1613
AcvI	CACGTG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	1813
AfaI	GTAC	2 cut(s)	1319, 1401
AfeI	AGCGCT	1 cut(s)	576
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	1396
AjnI	CCWGG	3 cut(s)	318, 432, 1105
AleI	CACNNNNGTG	1 cut(s)	1004
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
Alw26I	GTCTC	3 cut(s)	1144, 1548, 1654
AlwI	GGATC	2 cut(s)	930, 1117
Aor13HI	TCCGGA	1 cut(s)	1740
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	2 cut(s)	226, 1462
ApeKI	GCWGC	6 cut(s)	209, 416, 481, 863, 916, 1376
ApoI	RAATTY	1 cut(s)	660
AseI	ATTAAT	2 cut(s)	1491, 1746
AsiGI	ACCGGT	1 cut(s)	1396
Asp700I	GAANNNNTTC	1 cut(s)	1224
Asp718I	GGTACC	1 cut(s)	1317
AspLEI	GCGC	6 cut(s)	577, 715, 1381, 1487, 1777, 1815
AspS9I	GGNCC	1 cut(s)	1417
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	4 cut(s)	478, 1185, 1283, 1699
AsuNHI	GCTAGC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	1417
BalI	TGGCCA	2 cut(s)	228, 1464
BanI	GGYRCC	2 cut(s)	1317, 1812
BbrPI	CACGTG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	945
BbvCI	CCTCAGC	1 cut(s)	1442
BbvI	GCAGC	6 cut(s)	196, 428, 493, 875, 928, 1388
BccI	CCATC	4 cut(s)	181, 1204, 1247, 1399
BcgI	CGANNNNNNTGC	2 cut(s)	819, 853
BciT130I	CCWGG	3 cut(s)	320, 434, 1107
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	1144, 1548, 1654
BfaI	CTAG	6 cut(s)	42, 98, 206, 1214, 1551, 1608
BfmI	CTRYAG	6 cut(s)	414, 618, 914, 1002, 1261, 1366
BfoI	RGCGCY	2 cut(s)	578, 1816
BglII	AGATCT	1 cut(s)	887
BisI	GCNGC	6 cut(s)	210, 417, 482, 864, 917, 1377
BlsI	GCNGC	6 cut(s)	211, 418, 483, 865, 918, 1378
Bme1390I	CCNGG	4 cut(s)	183, 320, 434, 1107
Bme18I	GGWCC	1 cut(s)	1417
BmgT120I	GGNCC	1 cut(s)	1417
BmiI	GGNNCC	4 cut(s)	543, 1319, 1540, 1814
BmrFI	CCNGG	4 cut(s)	183, 320, 434, 1107
BmsI	GCATC	6 cut(s)	77, 700, 875, 881, 982, 1574
BmtI	GCTAGC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	945
Bpu10I	CCTNAGC	1 cut(s)	1442
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaHI	GRCGYC	1 cut(s)	1813
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	4 cut(s)	555, 630, 1105, 1761
BsaWI	WCCGGW	2 cut(s)	1396, 1740
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	2 cut(s)	1320, 1396
Bse1I	ACTGG	2 cut(s)	818, 1155
Bse3DI	GCAATG	1 cut(s)	1458
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	1740
BseBI	CCWGG	3 cut(s)	320, 434, 1107
BseDI	CCNNGG	4 cut(s)	555, 630, 1105, 1761
BseGI	GGATG	5 cut(s)	715, 872, 942, 1042, 1048
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	1458
BseMII	CTCAG	2 cut(s)	300, 1433
BseNI	ACTGG	2 cut(s)	818, 1155
BseXI	GCAGC	6 cut(s)	196, 428, 493, 875, 928, 1388
BshFI	GGCC	2 cut(s)	228, 1464
BshNI	GGYRCC	2 cut(s)	1317, 1812
BshTI	ACCGGT	1 cut(s)	1396
BsiSI	CCGG	4 cut(s)	182, 1321, 1397, 1741
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	3 cut(s)	1144, 1548, 1654
BsmI	GAATGC	2 cut(s)	1453, 1777
BsnI	GGCC	2 cut(s)	228, 1464
Bso31I	GGTCTC	1 cut(s)	1144
Bsp13I	TCCGGA	1 cut(s)	1740
Bsp143I	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
BspACI	CCGC	2 cut(s)	186, 904
BspANI	GGCC	2 cut(s)	228, 1464
BspCNI	CTCAG	2 cut(s)	301, 1434
BspEI	TCCGGA	1 cut(s)	1740
BspHI	TCATGA	1 cut(s)	1826
BspLI	GGNNCC	4 cut(s)	543, 1319, 1540, 1814
BspMAI	CTGCAG	4 cut(s)	418, 622, 918, 1370
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	930, 1117
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	2 cut(s)	1317, 1812
BspTNI	GGTCTC	1 cut(s)	1144
BsrDI	GCAATG	1 cut(s)	1458
BsrFI	RCCGGY	2 cut(s)	1320, 1396
BsrI	ACTGG	2 cut(s)	818, 1155
BssAI	RCCGGY	2 cut(s)	1320, 1396
BssECI	CCNNGG	4 cut(s)	555, 630, 1105, 1761
BssMI	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
BssNI	GRCGYC	1 cut(s)	1813
BssT1I	CCWWGG	2 cut(s)	630, 1761
Bst2UI	CCWGG	3 cut(s)	320, 434, 1107
Bst4CI	ACNGT	2 cut(s)	55, 129
Bst6I	CTCTTC	5 cut(s)	294, 308, 693, 740, 806
BstACI	GRCGYC	1 cut(s)	1813
BstAPI	GCANNNNNTGC	2 cut(s)	257, 467
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	6 cut(s)	207, 414, 443, 472, 1366, 1531
BstDEI	CTNAG	4 cut(s)	309, 587, 1143, 1442
BstF5I	GGATG	5 cut(s)	715, 872, 942, 1042, 1048
BstH2I	RGCGCY	2 cut(s)	578, 1816
BstHHI	GCGC	6 cut(s)	577, 715, 1381, 1487, 1777, 1815
BstKTI	GATC	9 cut(s)	49, 243, 654, 890, 925, 1112, 1517, 1645, 1728
BstMAI	GTCTC	3 cut(s)	1144, 1548, 1654
BstMBI	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
BstMWI	GCNNNNNNNGC	7 cut(s)	257, 467, 583, 863, 869, 1172, 1438
BstNI	CCWGG	3 cut(s)	320, 434, 1107
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	4 cut(s)	181, 318, 432, 1105
BstSFI	CTRYAG	6 cut(s)	414, 618, 914, 1002, 1261, 1366
BstV1I	GCAGC	6 cut(s)	196, 428, 493, 875, 928, 1388
BstV2I	GAAGAC	1 cut(s)	945
BstX2I	RGATCY	2 cut(s)	887, 1109
BstXI	CCANNNNNNTGG	1 cut(s)	1717
BstYI	RGATCY	2 cut(s)	887, 1109
BsuRI	GGCC	2 cut(s)	228, 1464
BtsCI	GGATG	5 cut(s)	715, 872, 942, 1042, 1048
BtsI	GCAGTG	3 cut(s)	627, 1528, 1540
BtsIMutI	CAGTG	3 cut(s)	627, 1528, 1540
Cac8I	GCNNGC	6 cut(s)	207, 414, 443, 472, 1366, 1531
CciI	TCATGA	1 cut(s)	1826
CfoI	GCGC	6 cut(s)	577, 715, 1381, 1487, 1777, 1815
Cfr10I	RCCGGY	2 cut(s)	1320, 1396
Cfr13I	GGNCC	1 cut(s)	1417
CsiI	ACCWGGT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	1318, 1400
CspAI	ACCGGT	1 cut(s)	1396
CviAII	CATG	8 cut(s)	22, 882, 965, 1235, 1300, 1373, 1646, 1827
CviQI	GTAC	2 cut(s)	1318, 1400
DdeI	CTNAG	4 cut(s)	309, 587, 1143, 1442
DinI	GGCGCC	1 cut(s)	1814
DpnI	GATC	9 cut(s)	48, 242, 653, 889, 924, 1111, 1516, 1644, 1727
DpnII	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
EaeI	YGGCCR	2 cut(s)	226, 1462
Eam1104I	CTCTTC	5 cut(s)	294, 308, 693, 740, 806
EarI	CTCTTC	5 cut(s)	294, 308, 693, 740, 806
EciI	GGCGGA	2 cut(s)	201, 919
Eco130I	CCWWGG	2 cut(s)	630, 1761
Eco31I	GGTCTC	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	1 cut(s)	1417
Eco47III	AGCGCT	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	354, 1613
Eco72I	CACGTG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	1417
EcoRII	CCWGG	3 cut(s)	318, 432, 1105
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	2 cut(s)	630, 1761
EcoT22I	ATGCAT	1 cut(s)	1735
EgeI	GGCGCC	1 cut(s)	1814
EheI	GGCGCC	1 cut(s)	1814
ErhI	CCWWGG	2 cut(s)	630, 1761
FaeI	CATG	8 cut(s)	25, 885, 968, 1238, 1303, 1376, 1649, 1830
FatI	CATG	8 cut(s)	21, 881, 964, 1234, 1299, 1372, 1645, 1826
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	6 cut(s)	210, 417, 482, 864, 917, 1377
FokI	GGATG	5 cut(s)	722, 859, 929, 1049, 1055
Fsp4HI	GCNGC	6 cut(s)	210, 417, 482, 864, 917, 1377
FspBI	CTAG	6 cut(s)	42, 98, 206, 1214, 1551, 1608
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	6 cut(s)	576, 714, 1380, 1486, 1776, 1814
GluI	GCNGC	6 cut(s)	210, 417, 482, 864, 917, 1377
HaeII	RGCGCY	2 cut(s)	578, 1816
HaeIII	GGCC	2 cut(s)	228, 1464
HapII	CCGG	4 cut(s)	182, 1321, 1397, 1741
HhaI	GCGC	6 cut(s)	577, 715, 1381, 1487, 1777, 1815
Hin1I	GRCGYC	1 cut(s)	1813
Hin1II	CATG	8 cut(s)	25, 885, 968, 1238, 1303, 1376, 1649, 1830
Hin6I	GCGC	6 cut(s)	575, 713, 1379, 1485, 1775, 1813
HinP1I	GCGC	6 cut(s)	575, 713, 1379, 1485, 1775, 1813
HindIII	AAGCTT	3 cut(s)	73, 336, 1595
HpaII	CCGG	4 cut(s)	182, 1321, 1397, 1741
HphI	GGTGA	4 cut(s)	478, 1185, 1283, 1699
Hpy166II	GTNNAC	3 cut(s)	791, 1206, 1291
Hpy188I	TCNGA	9 cut(s)	34, 108, 123, 559, 892, 1312, 1575, 1783, 1803
Hpy8I	GTNNAC	3 cut(s)	791, 1206, 1291
HpyAV	CCTTC	6 cut(s)	92, 531, 1129, 1297, 1714, 1803
HpyCH4III	ACNGT	2 cut(s)	55, 129
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	7 cut(s)	257, 467, 583, 863, 869, 1172, 1438
HpyF3I	CTNAG	4 cut(s)	309, 587, 1143, 1442
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	1813
Hsp92II	CATG	8 cut(s)	25, 885, 968, 1238, 1303, 1376, 1649, 1830
HspAI	GCGC	6 cut(s)	575, 713, 1379, 1485, 1775, 1813
KasI	GGCGCC	1 cut(s)	1812
Kpn2I	TCCGGA	1 cut(s)	1740
KpnI	GGTACC	1 cut(s)	1321
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	4 cut(s)	65, 188, 270, 1538
Lsp1109I	GCAGC	6 cut(s)	196, 428, 493, 875, 928, 1388
LweI	GCATC	6 cut(s)	77, 700, 875, 881, 982, 1574
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	6 cut(s)	42, 98, 206, 1214, 1551, 1608
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	1146, 1191
MalI	GATC	9 cut(s)	48, 242, 653, 889, 924, 1111, 1516, 1644, 1727
MboI	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
MfeI	CAATTG	3 cut(s)	456, 716, 858
MflI	RGATCY	2 cut(s)	887, 1109
MlsI	TGGCCA	2 cut(s)	228, 1464
MluNI	TGGCCA	2 cut(s)	228, 1464
Mly113I	GGCGCC	1 cut(s)	1813
MlyI	GAGTC	4 cut(s)	823, 1175, 1251, 1301
Mox20I	TGGCCA	2 cut(s)	228, 1464
Mph1103I	ATGCAT	1 cut(s)	1735
MroI	TCCGGA	1 cut(s)	1740
MroXI	GAANNNNTTC	1 cut(s)	1224
MscI	TGGCCA	2 cut(s)	228, 1464
MseI	TTAA	5 cut(s)	639, 1067, 1491, 1671, 1746
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	2 cut(s)	228, 1464
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	4 cut(s)	182, 1321, 1397, 1741
MspR9I	CCNGG	4 cut(s)	183, 320, 434, 1107
MunI	CAATTG	3 cut(s)	456, 716, 858
Mva1269I	GAATGC	2 cut(s)	1453, 1777
MvaI	CCWGG	3 cut(s)	320, 434, 1107
MwoI	GCNNNNNNNGC	7 cut(s)	257, 467, 583, 863, 869, 1172, 1438
NarI	GGCGCC	1 cut(s)	1813
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	8 cut(s)	25, 885, 968, 1238, 1303, 1376, 1649, 1830
NlaIV	GGNNCC	4 cut(s)	543, 1319, 1540, 1814
NmuCI	GTSAC	1 cut(s)	1191
NsbI	TGCGCA	1 cut(s)	714
NsiI	ATGCAT	1 cut(s)	1735
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	1826
PciSI	GCTCTTC	1 cut(s)	308
PctI	GAATGC	2 cut(s)	1453, 1777
PdmI	GAANNNNTTC	1 cut(s)	1224
PfeI	GAWTC	6 cut(s)	118, 146, 166, 1011, 1582, 1791
PinAI	ACCGGT	1 cut(s)	1396
PkrI	GCNGC	6 cut(s)	211, 418, 483, 865, 918, 1378
PleI	GAGTC	4 cut(s)	822, 1175, 1251, 1301
PluTI	GGCGCC	1 cut(s)	1816
PmaCI	CACGTG	1 cut(s)	161
PmlI	CACGTG	1 cut(s)	161
PpsI	GAGTC	4 cut(s)	822, 1175, 1251, 1301
Ppu21I	YACGTR	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	1417
PshBI	ATTAAT	2 cut(s)	1491, 1746
Psp5II	RGGWCCY	1 cut(s)	1417
Psp6I	CCWGG	3 cut(s)	318, 432, 1105
PspCI	CACGTG	1 cut(s)	161
PspGI	CCWGG	3 cut(s)	318, 432, 1105
PspN4I	GGNNCC	4 cut(s)	543, 1319, 1540, 1814
PspPI	GGNCC	1 cut(s)	1417
PspPPI	RGGWCCY	1 cut(s)	1417
PstI	CTGCAG	4 cut(s)	418, 622, 918, 1370
PsuI	RGATCY	2 cut(s)	887, 1109
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	2 cut(s)	1319, 1401
RsaNI	GTAC	2 cut(s)	1318, 1400
RseI	CAYNNNNRTG	1 cut(s)	1004
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	5 cut(s)	639, 1067, 1491, 1671, 1746
SatI	GCNGC	6 cut(s)	210, 417, 482, 864, 917, 1377
Sau3AI	GATC	9 cut(s)	46, 240, 651, 887, 922, 1109, 1514, 1642, 1725
Sau96I	GGNCC	1 cut(s)	1417
SchI	GAGTC	4 cut(s)	823, 1175, 1251, 1301
ScrFI	CCNGG	4 cut(s)	183, 320, 434, 1107
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	6 cut(s)	77, 700, 875, 881, 982, 1574
SfcI	CTRYAG	6 cut(s)	414, 618, 914, 1002, 1261, 1366
SfoI	GGCGCC	1 cut(s)	1814
SinI	GGWCC	1 cut(s)	1417
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SsiI	CCGC	2 cut(s)	186, 904
SspDI	GGCGCC	1 cut(s)	1812
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	6 cut(s)	42, 98, 206, 1214, 1551, 1608
StyD4I	CCNGG	4 cut(s)	181, 318, 432, 1105
StyI	CCWWGG	2 cut(s)	630, 1761
TaaI	ACNGT	2 cut(s)	55, 129
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	738, 839, 1585
TfiI	GAWTC	6 cut(s)	118, 146, 166, 1011, 1582, 1791
Tru1I	TTAA	5 cut(s)	639, 1067, 1491, 1671, 1746
Tru9I	TTAA	5 cut(s)	639, 1067, 1491, 1671, 1746
TscAI	CASTG	3 cut(s)	627, 1528, 1540
TseFI	GTSAC	1 cut(s)	1191
TseI	GCWGC	6 cut(s)	209, 416, 481, 863, 916, 1376
Tsp45I	GTSAC	1 cut(s)	1191
TspDTI	ATGAA	9 cut(s)	380, 870, 1062, 1089, 1316, 1401, 1469, 1670, 1815
TspGWI	ACGGA	2 cut(s)	257, 311
TspRI	CASTG	3 cut(s)	627, 1528, 1540
VpaK11BI	GGWCC	1 cut(s)	1417
VspI	ATTAAT	2 cut(s)	1491, 1746
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	1224
XspI	CTAG	6 cut(s)	42, 98, 206, 1214, 1551, 1608
Zsp2I	ATGCAT	1 cut(s)	1735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.