Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005712

Physical Location & Seq

Genomic Coordinates Reverse (-)

37220120 .. 37221722

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAGCCACTCTCTCCGTCCGGCCCCACCGCTTCTCCGCCGGCTCCTCCTTCCCTCGCCCTCCCGTCCGCCGACCCGGCCCGGCCCGCATCCCAAAACCCGACGAGCAGTTCGAGCCCTGGAGAGGCTCAATCACTCTCTCCCGCCGCCCATTAGCCCCGGCGGTCCAAGCCAACTCCAGAGCCGACGACTCGGTTCCCTTCGAGATGTCGGTGGAGAACGCCCTCAAGCTCCTCGGAGTCGCCGACGGCGCGTCGTTCGATGAAATACTTCGCGCCAAGAAAAACATCGTCGCTTCCTGTAAGGATGACCAGGAGGCGATTGCAAGGGTTGAGGCTGCATACGACATGTTACTTATGAGAAGCTTAACTCAGCGGCGAGCTGGCAAAGTTGTAAATAGTAGCGTTCGTTACGCTGATGTAAAGCAGGTGAATGCTCCTCCAATGCCGCAGTGGCTGCAGGCTACTGTTAAGAATCCACCTATTGCGGTTGAAACACCCTCGACAAGTGATCTCGGTGTACAAGTTGGTGTGTATGGAGCTTTGATGGCCTTAACTTATGTCAATGGAACTTCGACTTCTTCTTTGCCATATGGAGGGGCTGATGTTCCTGGACTGATCCTGGCTGGTAGCTTTGGAGCTTCCTTGTACTTCATGACTAAAAAGAATATTAAGTTAGGGAAGGCTACTATCATAACTGTAGGGGGACTTGCAGCTGGTGCAGTAGTTGGTTCAGTAGTAGAGAATTGGCTGCAGGTAGACATTGTTCCTTTTCTTGGCATACACTCTCCTGCTGCTGTAGTAAGCGAATTTATTCTTTTCTCGCAATTATTGGTCTCCCTATATTTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

284

Amino Acids

30.32

Weight (kDa)

9.57

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	84 - 283	3.1e-56	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03010 AT1G03010 AT1G03010
fragaria_vesca	FvH4_2g24980 FvH4_2g24980
malus_domestica	MD03G1278600.v1.1 MD03G1278700.v1.1 MD11G1301000.v1.1
prunus_persica	Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1 Prupe.8G254800_v2.0.a1
pyrus_communis	pycom03g22180 pycom11g26390
rosa_chinensis	RchiOBHm_Chr6g0292951
rosa_laevigata	RLG00000011979
rosa_roxburghii	Rroxscaffold_7G00174540
rosa_rugosa	Rorug06G0231100 Rorug06G0231200 Rorug06G0231300 Rorug06G0231400 Rorug06G0231400 Rorug06G0231400 Rorug06G0231500
rosa_samantha	Rh6AG344100 Rh6BG351500 Rh6CG358600 Rh6DG344300
rosa_wichuraiana	Rw6G030040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	2 cut(s)	418, 745
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	2 cut(s)	254, 276
AclWI	GGATC	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	809
AfaI	GTAC	2 cut(s)	522, 650
AfiI	CCNNNNNNNGG	3 cut(s)	125, 596, 776
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	494
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	4 cut(s)	119, 312, 610, 621
AluBI	AGCT	7 cut(s)	232, 366, 383, 542, 633, 641, 716
AluI	AGCT	7 cut(s)	232, 366, 383, 542, 633, 641, 716
Alw26I	GTCTC	1 cut(s)	841
AlwI	GGATC	1 cut(s)	613
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	23, 79, 84, 549
ApeKI	GCWGC	6 cut(s)	5, 338, 457, 713, 751, 794
ApoI	RAATTY	1 cut(s)	809
ArsI	GACNNNNNNTTYG	4 cut(s)	95, 127, 568, 600
Asp700I	GAANNNNTTC	2 cut(s)	270, 813
AspLEI	GCGC	2 cut(s)	254, 278
AspS9I	GGNCC	4 cut(s)	24, 80, 85, 166
AsuC2I	CCSGG	3 cut(s)	78, 83, 161
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	6 cut(s)	17, 325, 444, 725, 738, 781
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	4 cut(s)	121, 314, 612, 623
BcnI	CCSGG	3 cut(s)	78, 83, 161
BcoDI	GTCTC	1 cut(s)	841
BfmI	CTRYAG	4 cut(s)	458, 699, 752, 798
BfuAI	ACCTGC	2 cut(s)	418, 745
BglI	GCCNNNNNGGC	2 cut(s)	78, 454
BisI	GCNGC	9 cut(s)	6, 148, 339, 377, 449, 458, 714, 752, 795
BlsI	GCNGC	9 cut(s)	7, 149, 340, 378, 450, 459, 715, 753, 796
Bme1390I	CCNGG	7 cut(s)	78, 83, 121, 161, 314, 612, 623
Bme18I	GGWCC	1 cut(s)	166
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmgT120I	GGNCC	4 cut(s)	24, 80, 85, 166
BmiI	GGNNCC	3 cut(s)	26, 46, 198
BmrFI	CCNGG	7 cut(s)	78, 83, 121, 161, 314, 612, 623
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	2 cut(s)	142, 163
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	78, 83, 161
BsaI	GGTCTC	1 cut(s)	841
BsaJI	CCNNGG	3 cut(s)	119, 159, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 596, 776
Bse118I	RCCGGY	1 cut(s)	41
BseBI	CCWGG	4 cut(s)	121, 314, 612, 623
BseDI	CCNNGG	3 cut(s)	119, 159, 235
BseGI	GGATG	2 cut(s)	90, 313
BseLI	CCNNNNNNNGG	3 cut(s)	125, 596, 776
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	3 cut(s)	37, 224, 429
BseXI	GCAGC	6 cut(s)	17, 325, 444, 725, 738, 781
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	2 cut(s)	254, 276
BshFI	GGCC	4 cut(s)	25, 81, 86, 551
BsiSI	CCGG	5 cut(s)	22, 42, 78, 83, 161
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	3 cut(s)	125, 596, 776
BsmAI	GTCTC	1 cut(s)	841
BsmFI	GGGAC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	25, 81, 86, 551
Bso31I	GGTCTC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	2 cut(s)	511, 618
BspANI	GGCC	4 cut(s)	25, 81, 86, 551
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	254, 276
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	26, 46, 198
BspMAI	CTGCAG	2 cut(s)	462, 756
BspMI	ACCTGC	2 cut(s)	418, 745
BspPI	GGATC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	119, 159, 235
BssMI	GATC	2 cut(s)	511, 618
Bst2UI	CCWGG	4 cut(s)	121, 314, 612, 623
Bst4CI	ACNGT	2 cut(s)	469, 700
BstAPI	GCANNNNNTGC	2 cut(s)	457, 719
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	5 cut(s)	43, 88, 381, 385, 462
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	90, 313
BstFNI	CGCG	2 cut(s)	254, 276
BstHHI	GCGC	2 cut(s)	254, 278
BstKTI	GATC	2 cut(s)	514, 621
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	2 cut(s)	511, 618
BstMWI	GCNNNNNNNGC	9 cut(s)	78, 87, 115, 170, 251, 454, 457, 548, 719
BstNI	CCWGG	4 cut(s)	121, 314, 612, 623
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	7 cut(s)	76, 81, 119, 159, 312, 610, 621
BstSFI	CTRYAG	4 cut(s)	458, 699, 752, 798
BstUI	CGCG	2 cut(s)	254, 276
BstV1I	GCAGC	6 cut(s)	17, 325, 444, 725, 738, 781
BsuRI	GGCC	4 cut(s)	25, 81, 86, 551
BtsCI	GGATG	2 cut(s)	90, 313
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	458
BveI	ACCTGC	2 cut(s)	418, 745
Cac8I	GCNNGC	5 cut(s)	43, 88, 381, 385, 462
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	2 cut(s)	254, 278
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	4 cut(s)	24, 80, 85, 166
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	521, 649
CviAII	CATG	2 cut(s)	349, 655
CviQI	GTAC	2 cut(s)	521, 649
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	513, 620
DpnII	GATC	2 cut(s)	511, 618
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EciI	GGCGGA	2 cut(s)	28, 59
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	166
EcoRII	CCWGG	4 cut(s)	119, 312, 610, 621
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	2 cut(s)	352, 658
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	2 cut(s)	348, 654
FauI	CCCGC	2 cut(s)	95, 152
FauNDI	CATATG	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	9 cut(s)	6, 148, 339, 377, 449, 458, 714, 752, 795
FokI	GGATG	2 cut(s)	77, 320
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	9 cut(s)	6, 148, 339, 377, 449, 458, 714, 752, 795
GlaI	GCGC	2 cut(s)	253, 277
GluI	GCNGC	9 cut(s)	6, 148, 339, 377, 449, 458, 714, 752, 795
GsuI	CTGGAG	2 cut(s)	142, 163
HaeIII	GGCC	4 cut(s)	25, 81, 86, 551
HapII	CCGG	5 cut(s)	22, 42, 78, 83, 161
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	254, 278
Hin1II	CATG	2 cut(s)	352, 658
Hin6I	GCGC	2 cut(s)	252, 276
HinP1I	GCGC	2 cut(s)	252, 276
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	3 cut(s)	191, 240, 475
HpaII	CCGG	5 cut(s)	22, 42, 78, 83, 161
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	521, 760
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	3 cut(s)	180, 205, 655
Hpy8I	GTNNAC	2 cut(s)	521, 760
Hpy99I	CGWCG	5 cut(s)	107, 191, 251, 259, 296
HpyAV	CCTTC	3 cut(s)	61, 211, 676
HpyCH4III	ACNGT	2 cut(s)	469, 700
HpyCH4V	TGCA	6 cut(s)	326, 341, 460, 713, 722, 754
HpyF10VI	GCNNNNNNNGC	9 cut(s)	78, 87, 115, 170, 251, 454, 457, 548, 719
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	352, 658
HspAI	GCGC	2 cut(s)	252, 276
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	511, 618
LmnI	GCTCC	5 cut(s)	50, 237, 442, 539, 638
Lsp1109I	GCAGC	6 cut(s)	17, 325, 444, 725, 738, 781
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	351, 410
MalI	GATC	2 cut(s)	513, 620
MboI	GATC	2 cut(s)	511, 618
MboII	GAAGA	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	745, 809, 827
MlyI	GAGTC	2 cut(s)	185, 249
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	270, 813
MseI	TTAA	4 cut(s)	368, 471, 554, 672
MspA1I	CMGCKG	2 cut(s)	376, 716
MspI	CCGG	5 cut(s)	22, 42, 78, 83, 161
MspR9I	CCNGG	7 cut(s)	78, 83, 121, 161, 314, 612, 623
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	4 cut(s)	121, 314, 612, 623
MvnI	CGCG	2 cut(s)	254, 276
MwoI	GCNNNNNNNGC	9 cut(s)	78, 87, 115, 170, 251, 454, 457, 548, 719
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	3 cut(s)	78, 83, 161
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	2 cut(s)	511, 618
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	352, 658
NlaIV	GGNNCC	3 cut(s)	26, 46, 198
NspI	RCATGY	1 cut(s)	352
PagI	TCATGA	1 cut(s)	654
PaqCI	CACCTGC	1 cut(s)	418
PciI	ACATGT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 243
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	2 cut(s)	270, 813
PfeI	GAWTC	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	9 cut(s)	7, 149, 340, 378, 450, 459, 715, 753, 796
PleI	GAGTC	2 cut(s)	185, 248
PpsI	GAGTC	2 cut(s)	185, 248
PscI	ACATGT	1 cut(s)	348
Psp6I	CCWGG	4 cut(s)	119, 312, 610, 621
PspGI	CCWGG	4 cut(s)	119, 312, 610, 621
PspN4I	GGNNCC	3 cut(s)	26, 46, 198
PspPI	GGNCC	4 cut(s)	24, 80, 85, 166
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PstI	CTGCAG	2 cut(s)	462, 756
PstNI	CAGNNNCTG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	522, 650
RsaNI	GTAC	2 cut(s)	521, 649
SaqAI	TTAA	4 cut(s)	368, 471, 554, 672
SatI	GCNGC	9 cut(s)	6, 148, 339, 377, 449, 458, 714, 752, 795
Sau3AI	GATC	2 cut(s)	511, 618
Sau96I	GGNCC	4 cut(s)	24, 80, 85, 166
SchI	GAGTC	2 cut(s)	185, 249
ScrFI	CCNGG	7 cut(s)	78, 83, 121, 161, 314, 612, 623
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	4 cut(s)	458, 699, 752, 798
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	745, 809, 827
SspI	AATATT	1 cut(s)	670
StyD4I	CCNGG	7 cut(s)	76, 81, 119, 159, 312, 610, 621
TaaI	ACNGT	2 cut(s)	469, 700
TaqI	TCGA	5 cut(s)	114, 204, 261, 503, 575
TasI	AATT	3 cut(s)	745, 809, 827
TatI	WGTACW	2 cut(s)	520, 648
TauI	GCSGC	3 cut(s)	150, 379, 451
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	4 cut(s)	368, 471, 554, 672
Tru9I	TTAA	4 cut(s)	368, 471, 554, 672
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	6 cut(s)	5, 338, 457, 713, 751, 794
TspDTI	ATGAA	2 cut(s)	279, 643
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	809
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	759
XmnI	GAANNNNTTC	2 cut(s)	270, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.