Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016646

Physical Location & Seq

Genomic Coordinates Forward (+)

56524880 .. 56526466

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCCCAAGAGAAATGTGATTTCATGGAGTTGTATGATCAAGGCTTATGTAATGTGTGGTGGTTATAAGGAAGCACTTGCCTTGTTTCGTGAGATGCAGATGTTGGATAGTGTGAGGCCTAATGAGTTCACCATGTCGAGCATACTTTTGGCTTGTGGAAGATTGGGTGCACTTGAGCATGGGAAATGGGTTCATGCTTATATTGATAAATCTGGGATGAAAGTTGATGTCGTGCTAGGCATTGCATTGATGAATATGTATGCCAAATGTGGAAGTATTGAGGGAGCAAGAGGGGTTTTTGATAATATGGGACCTCATGAGGACGTGATGACCTGGAGTTCAATGATATCGGCCGGGCTGATTCCAGACGCATGGAAAGTGGTGATATCCATGCCAATGGAGCCTTATGTGCTTGTGTGGGGAGCTCTACTAAGTGGAGCTAGGATGCACAGGGACATTTCTGCGCTGAACAAGCTAATTCAGTTGGATCCAACTAGTAGTGCTGCATATGTACTCTTATCGAATGTGTACGCAAAAATGGGGAAATGGAGTGAAGTAAGACGTGTGAGAGATGTTATGGAGGAAAGCGGGATCAAGAAAGTTCCCGGCTGTACTTTGGTGGAGGATTCAAGCAGTGTGTGTGAATCCTCTTGGTCTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTGTCTATATATTTACTCCTTCATGTAAAGGTTCCAAAACAATTCAATACAACGAAAAATTTGTGTTTTTCTACAGTGTCTTTCACGAATTTTTAGTGGGGGATGATTCTCAACCAGAAACTTCAGAGAGGAAAATTATTAGGTGGTCCCGGACCATGGTACACGTGGTGGTCCGGGTTGAAGTTATTGGCTCATACGATTTCATTGTCGATTTACTAAAGATGAGAGGTTTTGTGGGCAATACAAGCGAGGCATTGCTCCAGCTTGATGAGGAAGGAAAGGAGCTGGCTCACAGTGAAAAATTAATTGCACTTGCCTTGTGCTTTTTGAAGACGAGTCCTGGTACCCCAATTCGAATAGTAAAAAACCTGAGGATATGCTACGATTGTCATGATGCCACGAAGATGATTTCCCAGGAGTTCGATCGAGAAATTGTCATCCGAGATTGCAACCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

381

Amino Acids

43.13

Weight (kDa)

6.71

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 52	9.5e-09	PPR repeat family
PPR	PF01535	7 - 34	7.6e-06	PPR repeat
E_motif	PF20431	154 - 208	1.5e-19	E motif
DYW_deaminase	PF14432	305 - 381	1.6e-19	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62890
fragaria_vesca	FvH4_2g25760
malus_domestica	MD11G1309500.v1.1
prunus_persica	Prupe.8G261800_v2.0.a1
pyrus_communis	pycom11g27060
rosa_chinensis	RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata	RLG00000011903
rosa_multiflora	Rmu_sc0016897.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173690
rosa_rugosa	Rorug06G0240600
rosa_samantha	Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	3 cut(s)	482, 495, 599
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	743, 773
AcuI	CTGAAG	1 cut(s)	792
AcvI	CACGTG	1 cut(s)	850
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	5 cut(s)	513, 530, 613, 846, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	841
AflIII	ACRYGT	2 cut(s)	562, 847
AgsI	TTSAA	5 cut(s)	342, 630, 731, 866, 1015
AhlI	ACTAGT	1 cut(s)	494
AjiI	CACGTC	2 cut(s)	325, 563
AjnI	CCWGG	3 cut(s)	332, 1024, 1098
AluBI	AGCT	5 cut(s)	425, 440, 475, 949, 970
AluI	AGCT	5 cut(s)	425, 440, 475, 949, 970
Alw21I	GWGCWC	2 cut(s)	172, 427
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	3 cut(s)	482, 495, 599
AoxI	GGCC	2 cut(s)	116, 351
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	743, 773
AseI	ATTAAT	1 cut(s)	989
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	4 cut(s)	311, 831, 837, 856
AsuC2I	CCSGG	4 cut(s)	355, 606, 835, 860
AsuHPI	GGTGA	2 cut(s)	121, 394
AsuII	TTCGAA	1 cut(s)	1039
AvaII	GGWCC	4 cut(s)	311, 831, 837, 856
AxyI	CCTNAGG	1 cut(s)	1055
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	850
BbsI	GAAGAC	1 cut(s)	1022
Bbv12I	GWGCWC	2 cut(s)	172, 427
BbvI	GCAGC	1 cut(s)	490
BciT130I	CCWGG	3 cut(s)	334, 1026, 1100
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	4 cut(s)	355, 606, 835, 860
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	3 cut(s)	236, 441, 495
BfmI	CTRYAG	1 cut(s)	757
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	7 cut(s)	334, 355, 606, 835, 860, 1026, 1100
Bme18I	GGWCC	4 cut(s)	311, 831, 837, 856
BmgBI	CACGTC	2 cut(s)	325, 563
BmgT120I	GGNCC	4 cut(s)	311, 831, 837, 856
BmiI	GGNNCC	6 cut(s)	312, 402, 489, 718, 833, 1030
BmrFI	CCNGG	7 cut(s)	334, 355, 606, 835, 860, 1026, 1100
BmsI	GCATC	3 cut(s)	84, 435, 1069
BpiI	GAAGAC	1 cut(s)	1022
BpmI	CTGGAG	2 cut(s)	355, 929
Bpu14I	TTCGAA	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	4 cut(s)	355, 606, 835, 860
BsaAI	YACGTR	1 cut(s)	850
BsaJI	CCNNGG	2 cut(s)	840, 1098
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse21I	CCTNAGG	1 cut(s)	1055
Bse3DI	GCAATG	2 cut(s)	240, 938
BseBI	CCWGG	3 cut(s)	334, 1026, 1100
BseDI	CCNNGG	2 cut(s)	840, 1098
BseGI	GGATG	4 cut(s)	222, 450, 793, 1122
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	240, 938
BseMII	CTCAG	1 cut(s)	1046
BseSI	GKGCMC	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	490
Bsh1285I	CGRYCG	2 cut(s)	354, 1111
BshFI	GGCC	2 cut(s)	118, 353
BshNI	GGYRCC	1 cut(s)	1028
BsiEI	CGRYCG	2 cut(s)	354, 1111
BsiHKAI	GWGCWC	2 cut(s)	172, 427
BsiSI	CCGG	4 cut(s)	354, 606, 835, 859
BslFI	GGGAC	3 cut(s)	324, 467, 817
BslI	CCNNNNNNNGG	1 cut(s)	841
BsmFI	GGGAC	3 cut(s)	324, 467, 817
BsnI	GGCC	2 cut(s)	118, 353
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp1286I	GDGCHC	2 cut(s)	172, 427
Bsp143I	GATC	4 cut(s)	36, 487, 591, 1108
Bsp19I	CCATGG	1 cut(s)	840
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	118, 353
BspCNI	CTCAG	1 cut(s)	1047
BspHI	TCATGA	2 cut(s)	316, 1075
BspLI	GGNNCC	6 cut(s)	312, 402, 489, 718, 833, 1030
BspPI	GGATC	3 cut(s)	482, 495, 599
BspT104I	TTCGAA	1 cut(s)	1039
BspT107I	GGYRCC	1 cut(s)	1028
BsrDI	GCAATG	2 cut(s)	240, 938
BssECI	CCNNGG	2 cut(s)	840, 1098
BssMI	GATC	4 cut(s)	36, 487, 591, 1108
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	3 cut(s)	334, 1026, 1100
Bst4CI	ACNGT	2 cut(s)	761, 980
BstBAI	YACGTR	1 cut(s)	850
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	2 cut(s)	431, 1055
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	4 cut(s)	222, 450, 793, 1122
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	39, 490, 594, 1111
BstMBI	GATC	4 cut(s)	36, 487, 591, 1108
BstMCI	CGRYCG	2 cut(s)	354, 1111
BstMWI	GCNNNNNNNGC	4 cut(s)	400, 409, 472, 930
BstNI	CCWGG	3 cut(s)	334, 1026, 1100
BstSCI	CCNGG	7 cut(s)	332, 353, 604, 833, 858, 1024, 1098
BstSFI	CTRYAG	1 cut(s)	757
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	1022
BstX2I	RGATCY	1 cut(s)	487
BstXI	CCANNNNNNTGG	2 cut(s)	372, 397
BstYI	RGATCY	1 cut(s)	487
BstZI	CGGCCG	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	1055
BsuRI	GGCC	2 cut(s)	118, 353
BtgI	CCRYGG	1 cut(s)	840
BtrI	CACGTC	2 cut(s)	325, 563
BtsCI	GGATG	4 cut(s)	222, 450, 793, 1122
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	640, 766, 985
Cac8I	GCNNGC	1 cut(s)	972
CciI	TCATGA	2 cut(s)	316, 1075
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	4 cut(s)	311, 831, 837, 856
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	5 cut(s)	512, 529, 612, 845, 1029
CviQI	GTAC	5 cut(s)	512, 529, 612, 845, 1029
DdeI	CTNAG	2 cut(s)	431, 1055
DpnI	GATC	4 cut(s)	38, 489, 593, 1110
DpnII	GATC	4 cut(s)	36, 487, 591, 1108
DraIII	CACNNNGTG	1 cut(s)	853
EaeI	YGGCCR	1 cut(s)	351
EagI	CGGCCG	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	427
Eco32I	GATATC	2 cut(s)	348, 387
Eco47I	GGWCC	4 cut(s)	311, 831, 837, 856
Eco52I	CGGCCG	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	792
Eco72I	CACGTG	1 cut(s)	850
Eco81I	CCTNAGG	1 cut(s)	1055
EcoICRI	GAGCTC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	3 cut(s)	332, 1024, 1098
EcoRV	GATATC	2 cut(s)	348, 387
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	840
FaqI	GGGAC	3 cut(s)	324, 467, 817
FauI	CCCGC	1 cut(s)	581
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	4 cut(s)	229, 457, 800, 1109
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	3 cut(s)	236, 441, 495
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	2 cut(s)	355, 929
HaeIII	GGCC	2 cut(s)	118, 353
HapII	CCGG	4 cut(s)	354, 606, 835, 859
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	466
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	5 cut(s)	361, 626, 644, 791, 1021
HpaII	CCGG	4 cut(s)	354, 606, 835, 859
HphI	GGTGA	2 cut(s)	121, 394
Hpy166II	GTNNAC	4 cut(s)	129, 170, 529, 847
Hpy188I	TCNGA	2 cut(s)	811, 1127
Hpy188III	TCNNGA	7 cut(s)	89, 317, 365, 595, 770, 1076, 1112
Hpy8I	GTNNAC	4 cut(s)	129, 170, 529, 847
HpyAV	CCTTC	2 cut(s)	714, 953
HpyCH4III	ACNGT	2 cut(s)	761, 980
HpyCH4IV	ACGT	3 cut(s)	324, 562, 849
HpyCH4V	TGCA	7 cut(s)	97, 170, 245, 448, 506, 995, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	400, 409, 472, 930
HpyF3I	CTNAG	2 cut(s)	431, 1055
HpySE526I	ACGT	3 cut(s)	324, 562, 849
HspAI	GCGC	1 cut(s)	464
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	36, 487, 591, 1108
LmnI	GCTCC	6 cut(s)	284, 400, 422, 437, 948, 967
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	3 cut(s)	84, 435, 1069
MaeI	CTAG	3 cut(s)	236, 441, 495
MaeII	ACGT	3 cut(s)	324, 562, 849
MalI	GATC	4 cut(s)	38, 489, 593, 1110
MboI	GATC	4 cut(s)	36, 487, 591, 1108
MboII	GAAGA	3 cut(s)	171, 1027, 1099
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	172, 427
MluCI	AATT	9 cut(s)	477, 726, 743, 773, 819, 986, 990, 1035, 1116
MlyI	GAGTC	1 cut(s)	1030
MmeI	TCCRAC	3 cut(s)	84, 465, 515
MseI	TTAA	1 cut(s)	989
MslI	CAYNNNNRTG	2 cut(s)	395, 1088
MspI	CCGG	4 cut(s)	354, 606, 835, 859
MspR9I	CCNGG	7 cut(s)	334, 355, 606, 835, 860, 1026, 1100
MvaI	CCWGG	3 cut(s)	334, 1026, 1100
MwoI	GCNNNNNNNGC	4 cut(s)	400, 409, 472, 930
NciI	CCSGG	4 cut(s)	355, 606, 835, 860
NcoI	CCATGG	1 cut(s)	840
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	4 cut(s)	36, 487, 591, 1108
NlaIV	GGNNCC	6 cut(s)	312, 402, 489, 718, 833, 1030
NspV	TTCGAA	1 cut(s)	1039
PagI	TCATGA	2 cut(s)	316, 1075
PceI	AGGCCT	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	361, 626, 644, 791
PfoI	TCCNGGA	1 cut(s)	833
PkrI	GCNGC	1 cut(s)	505
Ple19I	CGATCG	1 cut(s)	1111
PleI	GAGTC	1 cut(s)	1029
PmaCI	CACGTG	1 cut(s)	850
PmlI	CACGTG	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	1029
Ppu21I	YACGTR	1 cut(s)	850
PpuMI	RGGWCCY	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	989
PsiI	TTATAA	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	332, 1024, 1098
PspCI	CACGTG	1 cut(s)	850
PspGI	CCWGG	3 cut(s)	332, 1024, 1098
PspN4I	GGNNCC	6 cut(s)	312, 402, 489, 718, 833, 1030
PspPI	GGNCC	4 cut(s)	311, 831, 837, 856
PspPPI	RGGWCCY	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	487
PvuI	CGATCG	1 cut(s)	1111
RsaI	GTAC	5 cut(s)	513, 530, 613, 846, 1030
RsaNI	GTAC	5 cut(s)	512, 529, 612, 845, 1029
RseI	CAYNNNNRTG	2 cut(s)	395, 1088
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	989
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	4 cut(s)	36, 487, 591, 1108
Sau96I	GGNCC	4 cut(s)	311, 831, 837, 856
SchI	GAGTC	1 cut(s)	1030
ScrFI	CCNGG	7 cut(s)	334, 355, 606, 835, 860, 1026, 1100
SduI	GDGCHC	2 cut(s)	172, 427
SfaNI	GCATC	3 cut(s)	84, 435, 1069
SfcI	CTRYAG	1 cut(s)	757
SfuI	TTCGAA	1 cut(s)	1039
SinI	GGWCC	4 cut(s)	311, 831, 837, 856
SmiMI	CAYNNNNRTG	2 cut(s)	395, 1088
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	9 cut(s)	477, 726, 743, 773, 819, 986, 990, 1035, 1116
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	3 cut(s)	236, 441, 495
SstI	GAGCTC	1 cut(s)	427
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	7 cut(s)	332, 353, 604, 833, 858, 1024, 1098
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	2 cut(s)	761, 980
TaiI	ACGT	3 cut(s)	327, 565, 852
TaqI	TCGA	6 cut(s)	137, 521, 894, 1039, 1107, 1111
TasI	AATT	9 cut(s)	477, 726, 743, 773, 819, 986, 990, 1035, 1116
TatI	WGTACW	2 cut(s)	511, 611
TfiI	GAWTC	4 cut(s)	361, 626, 644, 791
Tru1I	TTAA	1 cut(s)	989
Tru9I	TTAA	1 cut(s)	989
TscAI	CASTG	3 cut(s)	640, 766, 985
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	6 cut(s)	12, 182, 233, 266, 696, 877
TspRI	CASTG	3 cut(s)	640, 766, 985
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	4 cut(s)	311, 831, 837, 856
VspI	ATTAAT	1 cut(s)	989
XapI	RAATTY	2 cut(s)	743, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	847
XspI	CTAG	3 cut(s)	236, 441, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.