Rroxscaffold_7G00173690

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016646
Physical Location & Seq
Reverse (-)
13616268 .. 13618097
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173690.1

Sequence Viewer

Length: 849 bp
ATGCGAGCTTCTCCAAAGCTCATATCTTTCACTCACCTAAGTCTTAATGTTTCCCATCCCACTCCTGAAGCCTTCGTTTGGAACACCCTTATCCAAGCCCATGTCCAATCCACTCCCCGATCTCCATCTTCAATCGAATGCGCTTACATGGAGTTGAACCCGATAACCGCACCTTCCCTTTCCTCCTTCAATTCTTCAAATCCATTCCTTACTTCCAATCAAGAAAACGAATCCATTCCCAAATTCTTCTCTTCGGTGTTTGATGAAATTACCCAACCAGATTTGCCGTCTTGGAATTCGATCATAGATGCGTATGCGAAAGTGGGTTTGATTGATGCCGCACGAGATGTGTTCAATGAAATGCCCAAGAGAAATGTGATTTCATGGAGTTGTATGATCAAGGCGAATGTAATTTGTGGTGGTTATAATTATAAGGAAGCACTTGCCTTGTTTCATGAGATGCGGATGTTGGATAGTGTGAGGCCTAATGAGTTCACCATGCCGAGCATACTTTTGGCTTGTGGAAGATTGGGTGCACTTGAGCATGGGAAATGGGTTCATGCTTATATTGATAAATACGGGATGAAAGTTGATGTCGTGCTAGGGACTGCATATATTGATGAACATAGTCGGGCCGGGTCGATTCCGGACGCATGGAAAGTGGTGATATCCATGCCAATGGAGCTCGGTGTGCTTATGTGGGGAGCTCTACTAAGTGGAGCTAGGATGCACAGGGACATAGAAACAAGTGAGATTGCGCCGAACAAGCTAATTCGGTTGGATCCAACTAATAGTGCTTGCATATGTACTTTTATCGAATGTGTACGCAAAAATGGGGAAATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

282

Amino Acids

31.45

Weight (kDa)

5.77

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 93 - 127 3.7e-08 PPR repeat family
PPR PF01535 97 - 126 6.7e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 426, 432
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 3 cut(s) 168, 339, 463
AclWI GGATC 2 cut(s) 776, 789
AcsI RAATTY 2 cut(s) 242, 295
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 808, 825
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 5 cut(s) 132, 157, 190, 198, 355
AluBI AGCT 6 cut(s) 8, 19, 685, 707, 722, 769
AluI AGCT 6 cut(s) 8, 19, 685, 707, 722, 769
Alw21I GWGCWC 3 cut(s) 538, 687, 709
Alw44I GTGCAC 1 cut(s) 534
AlwI GGATC 2 cut(s) 776, 789
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 2 cut(s) 482, 633
ApaLI GTGCAC 1 cut(s) 534
ApoI RAATTY 2 cut(s) 242, 295
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 143, 760
AspS9I GGNCC 1 cut(s) 633
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 3 cut(s) 26, 487, 676
BaeGI GKGCMC 1 cut(s) 538
BamHI GGATCC 1 cut(s) 781
BanII GRGCYC 2 cut(s) 687, 709
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 3 cut(s) 538, 687, 709
BccI CCATC 2 cut(s) 63, 133
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 1 cut(s) 637
BfaI CTAG 2 cut(s) 602, 723
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 633
BmiI GGNNCC 1 cut(s) 783
BmrFI CCNGG 1 cut(s) 637
BmsI GCATC 4 cut(s) 298, 325, 450, 717
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 646
BseGI GGATG 4 cut(s) 55, 471, 588, 732
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 538
BshFI GGCC 2 cut(s) 484, 635
BsiHKAI GWGCWC 3 cut(s) 538, 687, 709
BsiSI CCGG 2 cut(s) 636, 647
BslFI GGGAC 2 cut(s) 619, 749
BslI CCNNNNNNNGG 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 619, 749
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 484, 635
Bsp1286I GDGCHC 3 cut(s) 538, 687, 709
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 4 cut(s) 119, 300, 396, 781
BspACI CCGC 3 cut(s) 168, 339, 463
BspANI GGCC 2 cut(s) 484, 635
BspEI TCCGGA 1 cut(s) 646
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 783
BspPI GGATC 2 cut(s) 776, 789
BssMI GATC 4 cut(s) 119, 300, 396, 781
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 6, 799
BstDEI CTNAG 2 cut(s) 38, 713
BstF5I GGATG 4 cut(s) 55, 471, 588, 732
BstHHI GCGC 2 cut(s) 143, 760
BstKTI GATC 4 cut(s) 122, 303, 399, 784
BstMBI GATC 4 cut(s) 119, 300, 396, 781
BstMWI GCNNNNNNNGC 3 cut(s) 682, 691, 766
BstSCI CCNGG 1 cut(s) 635
BstSLI GKGCMC 1 cut(s) 538
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 679
BstYI RGATCY 1 cut(s) 781
BsuRI GGCC 2 cut(s) 484, 635
BtsCI GGATG 4 cut(s) 55, 471, 588, 732
Cac8I GCNNGC 2 cut(s) 6, 799
CciI TCATGA 1 cut(s) 454
CfoI GCGC 2 cut(s) 143, 760
Cfr13I GGNCC 1 cut(s) 633
CseI GACGC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 807, 824
CviAII CATG 9 cut(s) 101, 148, 384, 455, 499, 545, 560, 654, 673
CviQI GTAC 2 cut(s) 807, 824
DdeI CTNAG 2 cut(s) 38, 713
DpnI GATC 4 cut(s) 121, 302, 398, 783
DpnII GATC 4 cut(s) 119, 300, 396, 781
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 2 cut(s) 685, 707
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 687, 709
Eco32I GATATC 1 cut(s) 669
Eco53kI GAGCTC 2 cut(s) 685, 707
Eco57I CTGAAG 1 cut(s) 87
EcoICRI GAGCTC 2 cut(s) 685, 707
EcoRI GAATTC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 669
EcoT38I GRGCYC 2 cut(s) 687, 709
FaeI CATG 9 cut(s) 104, 151, 387, 458, 502, 548, 563, 657, 676
FaqI GGGAC 2 cut(s) 619, 749
FatI CATG 9 cut(s) 100, 147, 383, 454, 498, 544, 559, 653, 672
FauNDI CATATG 1 cut(s) 803
FbaI TGATCA 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 4 cut(s) 42, 478, 595, 739
FriOI GRGCYC 2 cut(s) 687, 709
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 2 cut(s) 602, 723
GlaI GCGC 2 cut(s) 142, 759
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 2 cut(s) 484, 635
HapII CCGG 2 cut(s) 636, 647
HgaI GACGC 1 cut(s) 659
HhaI GCGC 2 cut(s) 143, 760
Hin1II CATG 9 cut(s) 104, 151, 387, 458, 502, 548, 563, 657, 676
Hin6I GCGC 2 cut(s) 141, 758
HinP1I GCGC 2 cut(s) 141, 758
HinfI GANTC 2 cut(s) 230, 643
HpaII CCGG 2 cut(s) 636, 647
HphI GGTGA 3 cut(s) 26, 487, 676
Hpy166II GTNNAC 3 cut(s) 495, 536, 824
Hpy188III TCNNGA 4 cut(s) 65, 221, 455, 647
Hpy8I GTNNAC 3 cut(s) 495, 536, 824
HpyAV CCTTC 3 cut(s) 82, 183, 196
HpyCH4V TGCA 4 cut(s) 536, 611, 730, 801
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 691, 766
HpyF3I CTNAG 2 cut(s) 38, 713
Hsp92II CATG 9 cut(s) 104, 151, 387, 458, 502, 548, 563, 657, 676
HspAI GCGC 2 cut(s) 141, 758
Kpn2I TCCGGA 1 cut(s) 646
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 119, 300, 396, 781
LmnI GCTCC 3 cut(s) 682, 704, 719
LpnPI CCDG 5 cut(s) 78, 291, 649, 660, 718
LweI GCATC 4 cut(s) 298, 325, 450, 717
MaeI CTAG 2 cut(s) 602, 723
MalI GATC 4 cut(s) 121, 302, 398, 783
MboI GATC 4 cut(s) 119, 300, 396, 781
MboII GAAGA 5 cut(s) 120, 186, 238, 243, 537
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 3 cut(s) 538, 687, 709
MluCI AATT 7 cut(s) 190, 242, 267, 295, 411, 427, 771
MmeI TCCRAC 3 cut(s) 450, 759, 809
MnlI CCTC 2 cut(s) 193, 474
MroI TCCGGA 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 2 cut(s) 636, 647
MspR9I CCNGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 682, 691, 766
NciI CCSGG 1 cut(s) 637
NdeI CATATG 1 cut(s) 803
NdeII GATC 4 cut(s) 119, 300, 396, 781
NlaIII CATG 9 cut(s) 104, 151, 387, 458, 502, 548, 563, 657, 676
NlaIV GGNNCC 1 cut(s) 783
NmeAIII GCCGAG 1 cut(s) 528
PagI TCATGA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 484
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 230, 643
PkrI GCNGC 1 cut(s) 340
PsiI TTATAA 2 cut(s) 426, 432
Psp124BI GAGCTC 2 cut(s) 687, 709
PspN4I GGNNCC 1 cut(s) 783
PspPI GGNCC 1 cut(s) 633
PsuI RGATCY 1 cut(s) 781
RsaI GTAC 2 cut(s) 808, 825
RsaNI GTAC 2 cut(s) 807, 824
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 2 cut(s) 687, 709
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 119, 300, 396, 781
Sau96I GGNCC 1 cut(s) 633
ScrFI CCNGG 1 cut(s) 637
SduI GDGCHC 3 cut(s) 538, 687, 709
SetI ASST 8 cut(s) 10, 21, 39, 175, 687, 709, 724, 771
SfaNI GCATC 4 cut(s) 298, 325, 450, 717
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 7 cut(s) 190, 242, 267, 295, 411, 427, 771
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 3 cut(s) 168, 339, 463
SspMI CTAG 2 cut(s) 602, 723
SstI GAGCTC 2 cut(s) 687, 709
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 635
TaqI TCGA 4 cut(s) 135, 299, 641, 816
TasI AATT 7 cut(s) 190, 242, 267, 295, 411, 427, 771
TatI WGTACW 1 cut(s) 806
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 2 cut(s) 230, 643
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TspDTI ATGAA 7 cut(s) 279, 372, 372, 443, 548, 599, 636
VneI GTGCAC 1 cut(s) 534
XapI RAATTY 2 cut(s) 242, 295
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 602, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.