Rh6CG367600

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016646
Physical Location & Seq
Forward (+)
55545646 .. 55550342
4697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG367600.1

Sequence Viewer

Length: 312 bp
ATGCCAATGGAGCCTTATGTGCTTGTGTGGGGAGCTCTACTAAGTGGAGCTAGGATGCACAGGGACATTTCTGCGCTGAACAAGCTAATTCAGTTGGATCCAACTAGTAGTGCTGCATATGTACTCTTATCGAATGTGTACGCAAAAATGGGGAAATGGAGTGAAGTAAGACGTGTGAGAGATGTTATGGAGGAAAGCGGGATCAAGAAAGTTCCCGGCTACCCCGTGAGACCTGTGCCGCTTTTCAAATTGACTCGTTCGTCACTCGCCGGTGATTATTGTCAGGTCCGGCTACTTCTGTTTAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

103

Amino Acids

11.7

Weight (kDa)

9.93

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 24 - 73 7.4e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 259
AciI CCGC 2 cut(s) 198, 239
AclWI GGATC 3 cut(s) 92, 105, 209
AfaI GTAC 2 cut(s) 123, 140
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 247
AhlI ACTAGT 1 cut(s) 104
AjiI CACGTC 1 cut(s) 173
AluBI AGCT 3 cut(s) 35, 50, 85
AluI AGCT 3 cut(s) 35, 50, 85
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 3 cut(s) 92, 105, 209
ApeKI GCWGC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 223
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 2 cut(s) 51, 105
BisI GCNGC 2 cut(s) 114, 239
BlsI GCNGC 2 cut(s) 115, 240
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 12, 99
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 269
BseGI GGATG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 216, 270, 289
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 97, 201
BspACI CCGC 2 cut(s) 198, 239
BspLI GGNNCC 2 cut(s) 12, 99
BspPI GGATC 3 cut(s) 92, 105, 209
BspTNI GGTCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 2 cut(s) 97, 201
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 100, 204
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 97, 201
BstMWI GCNNNNNNNGC 3 cut(s) 10, 19, 82
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 60
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 122, 139
CviJI RGCY 6 cut(s) 13, 35, 50, 85, 219, 292
CviKI_1 RGCY 6 cut(s) 13, 35, 50, 85, 219, 292
CviQI GTAC 2 cut(s) 122, 139
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 99, 203
DpnII GATC 2 cut(s) 97, 201
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 37
FaiI YATR 4 cut(s) 18, 118, 120, 188
FaqI GGGAC 1 cut(s) 77
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 114, 239
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 114, 239
FspBI CTAG 2 cut(s) 51, 105
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 114, 239
HapII CCGG 3 cut(s) 216, 270, 289
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 253
HpaII CCGG 3 cut(s) 216, 270, 289
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 58, 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 19, 82
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 172
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 97, 201
LmnI GCTCC 3 cut(s) 10, 32, 47
LpnPI CCDG 6 cut(s) 46, 229, 246, 269, 283, 302
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 51, 105
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 99, 203
MboI GATC 2 cut(s) 97, 201
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 87, 248
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 75, 125
MnlI CCTC 1 cut(s) 184
MspI CCGG 3 cut(s) 216, 270, 289
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 10, 19, 82
NciI CCSGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 97, 201
NlaIV GGNNCC 2 cut(s) 12, 99
NmuCI GTSAC 1 cut(s) 261
PkrI GCNGC 2 cut(s) 115, 240
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 12, 99
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 123, 140
RsaNI GTAC 2 cut(s) 122, 139
SacI GAGCTC 1 cut(s) 37
SatI GCNGC 2 cut(s) 114, 239
Sau3AI GATC 2 cut(s) 97, 201
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 37
SetI ASST 6 cut(s) 37, 52, 87, 175, 235, 288
SfaNI GCATC 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 1 cut(s) 286
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 2 cut(s) 87, 248
SsiI CCGC 2 cut(s) 198, 239
SspMI CTAG 2 cut(s) 51, 105
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 87, 248
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 241
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 286
XspI CTAG 2 cut(s) 51, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.