Rh6DG354300

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016646
Physical Location & Seq
Forward (+)
55338068 .. 55338439
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG354300.1

Sequence Viewer

Length: 372 bp
ATGCCCAAGAGAAATGTGATTTCATGGGGTTGTATGATCAAGGCGTATGTAATGTGTGGTGGCTATAATTATAAGGAAGCACTTGCCTTGTTTCGTGAGATGCAGATGTTGGATAGTGTGAGGCCTAATGAGTTCACCATGTCGAGCATACTTTTGGCTTGTGGAAGATTGGGTGCACTTGAGCATGGGAAATGGGTTCATGCTTATATTGATAAATCTGGGATGAAAGTTGATGTCGTGCTAGGGACTGCATTGATGAAAATGTATGCCAAATGTGGAAGTATTGAGGGAGCAAGAGGGGTTTTTGATAATATGGGACCTCATGAGGACGTGATGACCTGGAGTTCAATGATATCGGGACTCGCCAAGTGA

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

8.71

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 4 - 54 4.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AgsI TTSAA 1 cut(s) 348
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 338
Alw21I GWGCWC 1 cut(s) 178
Alw44I GTGCAC 1 cut(s) 174
AoxI GGCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 340
BclI TGATCA 1 cut(s) 36
BfaI CTAG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 317
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 178
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 2 cut(s) 259, 330
BsmFI GGGAC 2 cut(s) 259, 330
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 124
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 318
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 124
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 228
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 5 cut(s) 24, 139, 185, 200, 323
CviJI RGCY 3 cut(s) 63, 124, 158
CviKI_1 RGCY 3 cut(s) 63, 124, 158
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 124
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 338
EcoRV GATATC 1 cut(s) 354
FaeI CATG 5 cut(s) 27, 142, 188, 203, 326
FaqI GGGAC 2 cut(s) 259, 330
FatI CATG 5 cut(s) 23, 138, 184, 199, 322
FbaI TGATCA 1 cut(s) 36
FokI GGATG 1 cut(s) 235
FspBI CTAG 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 5 cut(s) 27, 142, 188, 203, 326
HinfI GANTC 1 cut(s) 360
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 135, 176
Hpy188III TCNNGA 3 cut(s) 95, 323, 357
Hpy8I GTNNAC 2 cut(s) 135, 176
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 3 cut(s) 103, 176, 251
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 5 cut(s) 27, 142, 188, 203, 326
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 3 cut(s) 204, 325, 352
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 330
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 114, 280, 290, 319, 330
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
NdeII GATC 1 cut(s) 36
NlaIII CATG 5 cut(s) 27, 142, 188, 203, 326
NlaIV GGNNCC 1 cut(s) 318
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 1 cut(s) 124
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PpuMI RGGWCCY 1 cut(s) 317
PsiI TTATAA 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 322, 333, 341
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 67
SseBI AGGCCT 1 cut(s) 124
SspMI CTAG 1 cut(s) 242
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 338
TaiI ACGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 12, 188, 239, 272
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 317
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.