Rorug06G0240600

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016646
Physical Location & Seq
Forward (+)
38367924 .. 38369894
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0240600.1

Sequence Viewer

Length: 930 bp
ATGGCATCTGAAATGACACCACCTGCAGAACTCGAACTTCCGGGATTCCGATTCCATCCCACAGAGGAAGAGCTTCTCGAGTTCTACCTCAAGAGCGTGGTGTTCGGAAAGCGATTGCGCTTCGATATAATCGAGTTTCTGAACATCTACCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAAGATTGGAGAAAGGGAGTGGTACTTTTTCGTGCCCAGGGACAGGAAGCATGGGAGTGGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGGTTCCGACCGCAAAATTGTGAGCTTATCTGATCCGAAGAGGATTATCGGGTTGAGGAAGACTCTTGTTTTCTACAAAGGGAGAGCACCAAGAGGAACCAAGACTGATTGGGTCATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGACATAGTACTGTGCAAGATATATAGGAAGGCAACTTCCTTGAAAGTGCTAGAGCAAAGGGCAGCAATGGAGGAAGAGACGAAGATGGGCTTTCATGCCAATTCCCCTAACATTTCCTCGTCCCCTCCAACGTCAATGGACACCACCATGTCATTTTCCAGCTTCCAAGAACAGGAAGCACACCAGCATCATCATGATCTAACTGCGCAAATTCCCATAATTCCCACCAACCTTAAGAAAGAATTAGCAGATGATGCAGCACTAACTCCAGTAGAAGAGCAGCGAAAGGAAGAGGATGAGCAAGCAATGGAGATGAAGGAGTCTCCCACATGTCTTCAGACTCCTTTTGGAAAAGACAAGCTGCCAGAGCTCCTGGTTCCCAAAATGAGCATGGACTGGACCCAAGACCAATTTTGGGCACCCATGAATAGTCCTTGGCTTCTGCCGACCCCTTATGCCAACATTCTCAACATGGAATTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

309

Amino Acids

35.76

Weight (kDa)

6.12

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 1.6e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc16I TGCGCA 1 cut(s) 651
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 862
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 152, 314
AcsI RAATTY 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 2 cut(s) 206, 453
AfiI CCNNNNNNNGG 3 cut(s) 225, 616, 859
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 773
AgsI TTSAA 1 cut(s) 487
AjnI CCWGG 3 cut(s) 172, 218, 816
AluBI AGCT 5 cut(s) 73, 312, 606, 805, 814
AluI AGCT 5 cut(s) 73, 312, 606, 805, 814
Alw21I GWGCWC 2 cut(s) 376, 816
Alw26I GTCTC 2 cut(s) 515, 771
AlwI GGATC 2 cut(s) 152, 314
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 4 cut(s) 506, 701, 724, 805
ApoI RAATTY 1 cut(s) 654
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 2 cut(s) 120, 652
AspS9I GGNCC 1 cut(s) 843
AsuC2I CCSGG 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 843
BaeGI GKGCMC 2 cut(s) 219, 865
BanI GGYRCC 1 cut(s) 862
BanII GRGCYC 1 cut(s) 816
BbsI GAAGAC 2 cut(s) 353, 770
Bbv12I GWGCWC 2 cut(s) 376, 816
BbvI GCAGC 4 cut(s) 518, 713, 736, 792
BccI CCATC 2 cut(s) 63, 523
BciT130I CCWGG 3 cut(s) 174, 220, 818
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 515, 771
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 4 cut(s) 507, 702, 725, 806
BlsI GCNGC 4 cut(s) 508, 703, 726, 807
BmcAI AGTACT 1 cut(s) 453
Bme1390I CCNGG 4 cut(s) 42, 174, 220, 818
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 843
BmiI GGNNCC 5 cut(s) 292, 385, 822, 845, 864
BmrFI CCNGG 4 cut(s) 42, 174, 220, 818
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 3 cut(s) 14, 640, 688
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 353, 770
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 74, 425
BpuMI CCSGG 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 161, 218, 219, 878
Bsc4I CCNNNNNNNGG 3 cut(s) 225, 616, 859
Bse1I ACTGG 4 cut(s) 274, 292, 713, 845
Bse3DI GCAATG 2 cut(s) 516, 756
BseBI CCWGG 3 cut(s) 174, 220, 818
BseDI CCNNGG 4 cut(s) 161, 218, 219, 878
BseGI GGATG 2 cut(s) 55, 745
BseLI CCNNNNNNNGG 3 cut(s) 225, 616, 859
BseMI GCAATG 2 cut(s) 516, 756
BseNI ACTGG 4 cut(s) 274, 292, 713, 845
BseSI GKGCMC 2 cut(s) 219, 865
BseXI GCAGC 4 cut(s) 518, 713, 736, 792
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 862
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 376, 816
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 3 cut(s) 179, 236, 550
BslI CCNNNNNNNGG 3 cut(s) 225, 616, 859
BsmAI GTCTC 2 cut(s) 515, 771
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 3 cut(s) 179, 236, 550
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 4 cut(s) 219, 376, 816, 865
Bsp143I GATC 3 cut(s) 157, 319, 640
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 250
BspHI TCATGA 3 cut(s) 154, 402, 637
BspLI GGNNCC 5 cut(s) 292, 385, 822, 845, 864
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 2 cut(s) 152, 314
BspQI GCTCTTC 2 cut(s) 63, 714
BspT107I GGYRCC 1 cut(s) 862
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 2 cut(s) 516, 756
BsrI ACTGG 4 cut(s) 274, 292, 713, 845
BssECI CCNNGG 4 cut(s) 161, 218, 219, 878
BssMI GATC 3 cut(s) 157, 319, 640
BssT1I CCWWGG 2 cut(s) 161, 878
Bst2UI CCWGG 3 cut(s) 174, 220, 818
Bst4CI ACNGT 2 cut(s) 152, 456
Bst6I CTCTTC 5 cut(s) 63, 320, 513, 714, 729
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 747
BstF5I GGATG 2 cut(s) 55, 745
BstHHI GCGC 2 cut(s) 120, 652
BstKTI GATC 3 cut(s) 160, 322, 643
BstMAI GTCTC 2 cut(s) 515, 771
BstMBI GATC 3 cut(s) 157, 319, 640
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 698, 811
BstNI CCWGG 3 cut(s) 174, 220, 818
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 4 cut(s) 40, 172, 218, 816
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 2 cut(s) 219, 865
BstV1I GCAGC 4 cut(s) 518, 713, 736, 792
BstV2I GAAGAC 2 cut(s) 353, 770
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 2 cut(s) 55, 745
BtsIMutI CAGTG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 747
CciI TCATGA 3 cut(s) 154, 402, 637
CfoI GCGC 2 cut(s) 120, 652
Cfr13I GGNCC 1 cut(s) 843
Csp6I GTAC 2 cut(s) 205, 452
CviJI RGCY 8 cut(s) 73, 250, 312, 534, 606, 805, 814, 883
CviKI_1 RGCY 8 cut(s) 73, 250, 312, 534, 606, 805, 814, 883
CviQI GTAC 2 cut(s) 205, 452
DpnI GATC 3 cut(s) 159, 321, 642
DpnII GATC 3 cut(s) 157, 319, 640
Eam1104I CTCTTC 5 cut(s) 63, 320, 513, 714, 729
EarI CTCTTC 5 cut(s) 63, 320, 513, 714, 729
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 2 cut(s) 161, 878
Eco147I AGGCCT 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 843
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 172, 218, 816
EcoT14I CCWWGG 2 cut(s) 161, 878
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 2 cut(s) 161, 878
Esp3I CGTCTC 1 cut(s) 515
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 3 cut(s) 179, 236, 550
Fnu4HI GCNGC 4 cut(s) 507, 702, 725, 806
FokI GGATG 2 cut(s) 42, 752
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 4 cut(s) 507, 702, 725, 806
FspBI CTAG 1 cut(s) 494
FspI TGCGCA 1 cut(s) 651
GlaI GCGC 2 cut(s) 119, 651
GluI GCNGC 4 cut(s) 507, 702, 725, 806
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 1 cut(s) 250
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 120, 652
Hin6I GCGC 2 cut(s) 118, 650
HinP1I GCGC 2 cut(s) 118, 650
HinfI GANTC 5 cut(s) 45, 51, 349, 764, 784
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 8 cut(s) 10, 50, 107, 141, 295, 319, 324, 783
Hpy188III TCNNGA 5 cut(s) 77, 91, 155, 403, 638
HpyAV CCTTC 3 cut(s) 240, 466, 754
HpyCH4III ACNGT 2 cut(s) 152, 456
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 4 cut(s) 26, 432, 459, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 698, 811
HpySE526I ACGT 1 cut(s) 575
HspAI GCGC 2 cut(s) 118, 650
Kzo9I GATC 3 cut(s) 157, 319, 640
LguI GCTCTTC 2 cut(s) 63, 714
LmnI GCTCC 1 cut(s) 819
Lsp1109I GCAGC 4 cut(s) 518, 713, 736, 792
LweI GCATC 3 cut(s) 14, 640, 688
MaeI CTAG 1 cut(s) 494
MaeII ACGT 1 cut(s) 575
MalI GATC 3 cut(s) 159, 321, 642
MboI GATC 3 cut(s) 157, 319, 640
MboII GAAGA 8 cut(s) 80, 337, 358, 530, 538, 731, 746, 770
MhlI GDGCHC 4 cut(s) 219, 376, 816, 865
MluCI AATT 8 cut(s) 303, 434, 544, 654, 663, 686, 854, 920
MlyI GAGTC 3 cut(s) 343, 773, 778
MmeI TCCRAC 2 cut(s) 318, 596
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 3 cut(s) 237, 590, 636
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 4 cut(s) 42, 174, 220, 818
MvaI CCWGG 3 cut(s) 174, 220, 818
MwoI GCNNNNNNNGC 2 cut(s) 698, 811
NciI CCSGG 1 cut(s) 42
NdeII GATC 3 cut(s) 157, 319, 640
NlaIV GGNNCC 5 cut(s) 292, 385, 822, 845, 864
NsbI TGCGCA 1 cut(s) 651
NspI RCATGY 1 cut(s) 777
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 3 cut(s) 154, 402, 637
PaqCI CACCTGC 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 219
PceI AGGCCT 1 cut(s) 250
PciI ACATGT 1 cut(s) 773
PciSI GCTCTTC 2 cut(s) 63, 714
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 45, 51
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 4 cut(s) 508, 703, 726, 807
PleI GAGTC 3 cut(s) 343, 772, 778
PpsI GAGTC 3 cut(s) 343, 772, 778
PscI ACATGT 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 816
Psp6I CCWGG 3 cut(s) 172, 218, 816
PspGI CCWGG 3 cut(s) 172, 218, 816
PspN4I GGNNCC 5 cut(s) 292, 385, 822, 845, 864
PspPI GGNCC 1 cut(s) 843
PstI CTGCAG 1 cut(s) 28
RsaI GTAC 2 cut(s) 206, 453
RsaNI GTAC 2 cut(s) 205, 452
RseI CAYNNNNRTG 3 cut(s) 237, 590, 636
SacI GAGCTC 1 cut(s) 816
SapI GCTCTTC 2 cut(s) 63, 714
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 4 cut(s) 507, 702, 725, 806
Sau3AI GATC 3 cut(s) 157, 319, 640
Sau96I GGNCC 1 cut(s) 843
ScaI AGTACT 1 cut(s) 453
SchI GAGTC 3 cut(s) 343, 773, 778
ScrFI CCNGG 4 cut(s) 42, 174, 220, 818
SduI GDGCHC 4 cut(s) 219, 376, 816, 865
SetI ASST 9 cut(s) 25, 75, 90, 314, 578, 608, 678, 807, 816
SfaNI GCATC 3 cut(s) 14, 640, 688
SfcI CTRYAG 1 cut(s) 24
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 843
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 237, 590, 636
SmlI CTYRAG 4 cut(s) 77, 89, 440, 677
SmoI CTYRAG 4 cut(s) 77, 89, 440, 677
Sse9I AATT 8 cut(s) 303, 434, 544, 654, 663, 686, 854, 920
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 1 cut(s) 298
SspMI CTAG 1 cut(s) 494
SstI GAGCTC 1 cut(s) 816
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 4 cut(s) 40, 172, 218, 816
StyI CCWWGG 2 cut(s) 161, 878
TaaI ACNGT 2 cut(s) 152, 456
TaiI ACGT 1 cut(s) 578
TaqI TCGA 4 cut(s) 33, 78, 123, 132
TasI AATT 8 cut(s) 303, 434, 544, 654, 663, 686, 854, 920
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 2 cut(s) 45, 51
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 268
TseI GCWGC 4 cut(s) 506, 701, 724, 805
TspDTI ATGAA 4 cut(s) 419, 527, 773, 884
TspRI CASTG 1 cut(s) 268
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 1 cut(s) 654
XceI RCATGY 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 494
ZrmI AGTACT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.