Rmu_sc0016897.1_g000002

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016897.1
OG0016646
Physical Location & Seq
Reverse (-)
9240 .. 9788
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016897.1_g000002.1.cds

Sequence Viewer

Length: 549 bp
atgcagatgttggatagtgtgaggcctaatgagttcaccatgtcgagcatacttttgacttgtggaagattgggtgcacttgagcatgggaaatgggttcatgcttatattgataaatctgggatgaaagttgatgtcgtgctagggactgcattgatgaacatgtatgccaaatgtggaagtattgagggagcaagagtggtttttgatagtatgggacctcatgaggacgcgatgacctggagttcaatgatatcggccgggctgattccagacgcatggaaagtggtgatatccatgccaatggagcctgatgtgcttgtgtggggagctctactaagtggagctaggatgcacagggacatttctgcgctgaacaagctaattcagttggatccaactaatagtgctgcatatgtacttttatcgaatgtgtacgcaaaaatggggaaatggagtgaagtaagacgcgtgagagatgctatggaggaaagcgggatcaagaaagttcccggctgtactctggtcgaggtgggacgtgtctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003008 GO:0003674 GO:0005215 GO:0005432 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007584 GO:0007610 GO:0007611 GO:0007612 GO:0007613 GO:0008150 GO:0008324 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0015075 GO:0015077 GO:0015081 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015318 GO:0015368 GO:0015491 GO:0015630 GO:0015672 GO:0016020 GO:0016021 GO:0019725 GO:0021537 GO:0022804 GO:0022857 GO:0022890 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0030425 GO:0030900 GO:0031224 GO:0031226 GO:0031667 GO:0032501 GO:0032502 GO:0033273 GO:0033280 GO:0033993 GO:0034220 GO:0035725 GO:0036477 GO:0042221 GO:0042592 GO:0042995 GO:0043005 GO:0043025 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044297 GO:0044309 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0045202 GO:0046873 GO:0048167 GO:0048168 GO:0048172 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050806 GO:0050877 GO:0050890 GO:0050896 GO:0051179 GO:0051234 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060291 GO:0060322 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0097447 GO:0097458 GO:0097553 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098703 GO:0098739 GO:0098771 GO:0098794 GO:0099080 GO:0099081 GO:0099177 GO:0099512 GO:0099513 GO:0099516 GO:0099587 GO:0120025 GO:0120038 GO:1901660 GO:1901700 GO:1902656 GO:1990034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

182

Amino Acids

20.01

Weight (kDa)

6.9

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 233, 471
AciI CCGC 1 cut(s) 495
AclWI GGATC 3 cut(s) 389, 402, 506
AcoI YGGCCR 1 cut(s) 258
AfaI GTAC 3 cut(s) 420, 437, 520
AflIII ACRYGT 3 cut(s) 162, 469, 538
AgsI TTSAA 1 cut(s) 249
AjiI CACGTC 1 cut(s) 539
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 3 cut(s) 332, 347, 382
AluI AGCT 3 cut(s) 332, 347, 382
Alw21I GWGCWC 2 cut(s) 79, 334
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 3 cut(s) 389, 402, 506
AoxI GGCC 2 cut(s) 23, 258
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 2 cut(s) 262, 513
AsuHPI GGTGA 2 cut(s) 28, 301
AvaII GGWCC 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 2 cut(s) 79, 334
BbvI GCAGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 2 cut(s) 262, 513
BfaI CTAG 2 cut(s) 143, 348
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 3 cut(s) 241, 262, 513
Bme18I GGWCC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 219, 309, 396
BmrFI CCNGG 3 cut(s) 241, 262, 513
BmsI GCATC 2 cut(s) 342, 469
BpmI CTGGAG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 262, 513
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 129, 357
BseSI GKGCMC 1 cut(s) 79
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 233, 471
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 25, 260
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 2 cut(s) 79, 334
BsiSI CCGG 2 cut(s) 261, 513
BslFI GGGAC 3 cut(s) 160, 231, 374
BsmFI GGGAC 3 cut(s) 160, 231, 374
BsnI GGCC 2 cut(s) 25, 260
Bsp1286I GDGCHC 2 cut(s) 79, 334
Bsp143I GATC 2 cut(s) 394, 498
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 25, 260
BspFNI CGCG 2 cut(s) 233, 471
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 219, 309, 396
BspPI GGATC 3 cut(s) 389, 402, 506
BssMI GATC 2 cut(s) 394, 498
Bst2UI CCWGG 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 129, 357
BstFNI CGCG 2 cut(s) 233, 471
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 2 cut(s) 397, 501
BstMBI GATC 2 cut(s) 394, 498
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 307, 316, 379
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 239, 260, 511
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 2 cut(s) 233, 471
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 2 cut(s) 279, 304
BstYI RGATCY 1 cut(s) 394
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 25, 260
BtgZI GCGATG 1 cut(s) 248
BtrI CACGTC 1 cut(s) 539
BtsCI GGATG 2 cut(s) 129, 357
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 3 cut(s) 239, 284, 477
Csp6I GTAC 3 cut(s) 419, 436, 519
CviAII CATG 7 cut(s) 40, 86, 101, 163, 224, 279, 298
CviJI RGCY 8 cut(s) 25, 260, 265, 310, 332, 347, 382, 516
CviKI_1 RGCY 8 cut(s) 25, 260, 265, 310, 332, 347, 382, 516
CviQI GTAC 3 cut(s) 419, 436, 519
DdeI CTNAG 1 cut(s) 338
DpnI GATC 2 cut(s) 396, 500
DpnII GATC 2 cut(s) 394, 498
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 332
EclXI CGGCCG 1 cut(s) 258
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 334
Eco32I GATATC 2 cut(s) 255, 294
Eco47I GGWCC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 239
EcoRV GATATC 2 cut(s) 255, 294
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 7 cut(s) 43, 89, 104, 166, 227, 282, 301
FaqI GGGAC 3 cut(s) 160, 231, 374
FatI CATG 7 cut(s) 39, 85, 100, 162, 223, 278, 297
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 2 cut(s) 136, 364
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 143, 348
GlaI GCGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 2 cut(s) 25, 260
HapII CCGG 2 cut(s) 261, 513
HgaI GACGC 3 cut(s) 239, 284, 477
HhaI GCGC 1 cut(s) 373
Hin1II CATG 7 cut(s) 43, 89, 104, 166, 227, 282, 301
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 1 cut(s) 268
HpaII CCGG 2 cut(s) 261, 513
HphI GGTGA 2 cut(s) 28, 301
Hpy166II GTNNAC 3 cut(s) 36, 77, 436
Hpy188III TCNNGA 3 cut(s) 224, 272, 502
Hpy8I GTNNAC 3 cut(s) 36, 77, 436
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 5 cut(s) 4, 77, 152, 355, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 316, 379
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 7 cut(s) 43, 89, 104, 166, 227, 282, 301
HspAI GCGC 1 cut(s) 371
Kzo9I GATC 2 cut(s) 394, 498
LmnI GCTCC 4 cut(s) 191, 307, 329, 344
LpnPI CCDG 9 cut(s) 105, 226, 253, 274, 285, 324, 343, 509, 526
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 342, 469
MaeI CTAG 2 cut(s) 143, 348
MaeII ACGT 1 cut(s) 538
MalI GATC 2 cut(s) 396, 500
MboI GATC 2 cut(s) 394, 498
MboII GAAGA 1 cut(s) 78
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 79, 334
MluCI AATT 1 cut(s) 384
MluI ACGCGT 1 cut(s) 469
MmeI TCCRAC 2 cut(s) 372, 422
MnlI CCTC 6 cut(s) 15, 181, 220, 231, 481, 523
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 2 cut(s) 261, 513
MspR9I CCNGG 3 cut(s) 241, 262, 513
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 2 cut(s) 233, 471
MwoI GCNNNNNNNGC 3 cut(s) 307, 316, 379
NciI CCSGG 2 cut(s) 262, 513
NdeI CATATG 1 cut(s) 415
NdeII GATC 2 cut(s) 394, 498
NlaIII CATG 7 cut(s) 43, 89, 104, 166, 227, 282, 301
NlaIV GGNNCC 3 cut(s) 219, 309, 396
NspI RCATGY 1 cut(s) 166
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 162
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 412
PpuMI RGGWCCY 1 cut(s) 218
PscI ACATGT 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 3 cut(s) 219, 309, 396
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 3 cut(s) 420, 437, 520
RsaNI GTAC 3 cut(s) 419, 436, 519
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 334
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 394, 498
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 3 cut(s) 241, 262, 513
SduI GDGCHC 2 cut(s) 79, 334
SetI ASST 7 cut(s) 223, 242, 334, 349, 384, 534, 541
SfaNI GCATC 2 cut(s) 342, 469
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 384
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 495
SspMI CTAG 2 cut(s) 143, 348
SstI GAGCTC 1 cut(s) 334
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 3 cut(s) 239, 260, 511
TaiI ACGT 1 cut(s) 541
TaqI TCGA 3 cut(s) 44, 428, 528
TasI AATT 1 cut(s) 384
TatI WGTACW 2 cut(s) 418, 518
TfiI GAWTC 1 cut(s) 268
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 89, 140, 173
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 166
XspI CTAG 2 cut(s) 143, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.