RLG00000011903

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016646
Physical Location & Seq
Reverse (-)
13648334 .. 13649249
916 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011903

Sequence Viewer

Length: 843 bp
ATGGAGTTGAACCCGATAACCGCACATCCCCTTTCCTCCTTCAATTCTTCAAATCCATTCCTTACTGGAAATCAGGAAAACGAATCCATGCCCAATTTGTTCTCTTCGGGTATGATCAGGACCCCTTTGTCCAGACTCCAGACCTCTTTCACTGACATGTACTCTGCTTGTGGGAATTTGATGCTTACCCTACCGGATTTGCCGTCTTGGAATTCGATCGTAGATGCGTATGCGAAAGTGGGTTTGATTGATGCTGCACGAGATGTGTTCAATGAAATGCCCAAGAGAAATGTGATTTCATGGAGTTGTATGATCAAGGCGTATGTAATGTGTGGTGGTTATAAGGAAGCACTTGCCTTGTTTCGTGAGATGCAGATGTTGGATAGTGTGAGGCCTAATGAGTTCACCATGTCGAGCATACTTTTGGCTTGTGGAAGATTGGGGACTGCATTGATGAACATGTATGCCAAATGTGGAAGTATTGAGGGAGCAAGAGGGGTTTTTAATAATATGGGACCTCATGAGGACGTGATCATGACCTGGAGTTCAATGATATCGGGACTCGCCATGCATGGACATGCTATGGAGTCTCTTGAATTATTTGCTGAGATGATCAAGTGTGGCGTGAGACCTAATGCTGTGACTTTTGTGGGTGTTCTTTGTGCTTGTGCTCACGGGGGTCTGGTAAATGAAGGTAAAGAGTATTTTAGGGGGATGGATGAGGAGTTTGGTACTAAGACTTTGATACAGCACTATGGTTGCATTGTCGACCTTTATGGAAGAGCCGGCCGGGCTGATTCCAGACGCATGAAAAGTGGTGATATCCATGCCAATGGAGCCTGA

Protein Analysis

281

Amino Acids

30.71

Weight (kDa)

5.98

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 65 - 98 9.4e-07 PPR repeat family
PPR PF01535 69 - 98 4.4e-07 PPR repeat
PPR_2 PF13041 96 - 144 6.2e-09 PPR repeat family
PPR PF01535 99 - 126 5.1e-06 PPR repeat
PPR_2 PF13041 178 - 225 4.1e-09 PPR repeat family
PPR PF01535 180 - 209 7.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016646)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62890
fragaria_vesca FvH4_2g25760
malus_domestica MD11G1309500.v1.1
prunus_persica Prupe.8G261800_v2.0.a1
pyrus_communis pycom11g27060
rosa_chinensis RchiOBHm_Chr6g0294051 RchiOBHm_Chr6g0294061
rosa_laevigata RLG00000011903
rosa_multiflora Rmu_sc0016897.1_g000002
rosa_roxburghii Rroxscaffold_7G00173690
rosa_rugosa Rorug06G0240600
rosa_samantha Rh6BG360400 Rh6CG367600 Rh6DG354300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AasI GACNNNNNNGTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 768
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 2 cut(s) 175, 211
AfaI GTAC 2 cut(s) 161, 733
AflIII ACRYGT 2 cut(s) 156, 459
AgsI TTSAA 6 cut(s) 10, 43, 51, 271, 549, 596
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 539
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 2 cut(s) 594, 622
AoxI GGCC 2 cut(s) 392, 787
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 175, 211
AspS9I GGNCC 2 cut(s) 120, 515
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 2 cut(s) 397, 830
AvaII GGWCC 2 cut(s) 120, 515
BauI CACGAG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 709
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 541
BclI TGATCA 4 cut(s) 114, 312, 531, 612
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 2 cut(s) 594, 622
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 541, 791
Bme18I GGWCC 2 cut(s) 120, 515
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 120, 515
BmiI GGNNCC 3 cut(s) 122, 516, 838
BmrFI CCNGG 2 cut(s) 541, 791
BmsI GCATC 4 cut(s) 171, 214, 241, 360
BpmI CTGGAG 2 cut(s) 122, 562
BpuMI CCSGG 1 cut(s) 791
BsaI GGTCTC 1 cut(s) 622
BsaWI WCCGGW 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 541
BseGI GGATG 3 cut(s) 25, 720, 724
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 737
BseX3I CGGCCG 1 cut(s) 787
BseXI GCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 240
Bsh1285I CGRYCG 2 cut(s) 219, 790
BshFI GGCC 2 cut(s) 394, 789
BsiEI CGRYCG 2 cut(s) 219, 790
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 3 cut(s) 194, 786, 790
BslFI GGGAC 3 cut(s) 457, 528, 573
BsmAI GTCTC 2 cut(s) 594, 622
BsmFI GGGAC 3 cut(s) 457, 528, 573
BsnI GGCC 2 cut(s) 394, 789
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 5 cut(s) 114, 216, 312, 531, 612
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 394, 789
BspCNI CTCAG 1 cut(s) 598
BspHI TCATGA 2 cut(s) 520, 534
BspLI GGNNCC 3 cut(s) 122, 516, 838
BspQI GCTCTTC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 785
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 785
BssMI GATC 5 cut(s) 114, 216, 312, 531, 612
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 541
Bst6I CTCTTC 2 cut(s) 109, 775
BstC8I GCNNGC 1 cut(s) 787
BstDEI CTNAG 2 cut(s) 606, 735
BstF5I GGATG 3 cut(s) 25, 720, 724
BstKTI GATC 5 cut(s) 117, 219, 315, 534, 615
BstMAI GTCTC 2 cut(s) 594, 622
BstMBI GATC 5 cut(s) 114, 216, 312, 531, 612
BstMCI CGRYCG 2 cut(s) 219, 790
BstMWI GCNNNNNNNGC 2 cut(s) 791, 836
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 3 cut(s) 160, 463, 581
BstSCI CCNGG 2 cut(s) 539, 789
BstV1I GCAGC 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 833
BstZI CGGCCG 1 cut(s) 787
BsuRI GGCC 2 cut(s) 394, 789
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 25, 720, 724
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 787
CciI TCATGA 2 cut(s) 520, 534
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 2 cut(s) 120, 515
CseI GACGC 1 cut(s) 813
Csp6I GTAC 2 cut(s) 160, 732
CviJI RGCY 6 cut(s) 394, 428, 785, 789, 794, 839
CviKI_1 RGCY 6 cut(s) 394, 428, 785, 789, 794, 839
CviQI GTAC 2 cut(s) 160, 732
DdeI CTNAG 2 cut(s) 606, 735
DpnI GATC 5 cut(s) 116, 218, 314, 533, 614
DpnII GATC 5 cut(s) 114, 216, 312, 531, 612
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 787
EagI CGGCCG 1 cut(s) 787
Eam1104I CTCTTC 2 cut(s) 109, 775
EarI CTCTTC 2 cut(s) 109, 775
EclXI CGGCCG 1 cut(s) 787
Eco147I AGGCCT 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 622
Eco32I GATATC 2 cut(s) 555, 823
Eco47I GGWCC 2 cut(s) 120, 515
Eco52I CGGCCG 1 cut(s) 787
EcoO109I RGGNCCY 2 cut(s) 120, 515
EcoRI GAATTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 539
EcoRV GATATC 2 cut(s) 555, 823
EcoT22I ATGCAT 1 cut(s) 573
FaqI GGGAC 3 cut(s) 457, 528, 573
FbaI TGATCA 4 cut(s) 114, 312, 531, 612
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 3 cut(s) 12, 727, 731
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 2 cut(s) 122, 562
HaeIII GGCC 2 cut(s) 394, 789
HapII CCGG 3 cut(s) 194, 786, 790
HgaI GACGC 1 cut(s) 813
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 5 cut(s) 83, 135, 561, 587, 797
HpaII CCGG 3 cut(s) 194, 786, 790
HphI GGTGA 2 cut(s) 397, 830
Hpy166II GTNNAC 2 cut(s) 405, 769
Hpy8I GTNNAC 2 cut(s) 405, 769
HpyAV CCTTC 2 cut(s) 49, 686
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 5 cut(s) 257, 373, 449, 571, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 791, 836
HpyF3I CTNAG 2 cut(s) 606, 735
HpySE526I ACGT 1 cut(s) 528
KroI GCCGGC 1 cut(s) 785
KroNI GCCGGC 1 cut(s) 787
Ksp22I TGATCA 4 cut(s) 114, 312, 531, 612
Kzo9I GATC 5 cut(s) 114, 216, 312, 531, 612
LguI GCTCTTC 1 cut(s) 775
LmnI GCTCC 2 cut(s) 488, 836
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 4 cut(s) 171, 214, 241, 360
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 640
MalI GATC 5 cut(s) 116, 218, 314, 533, 614
MboI GATC 5 cut(s) 114, 216, 312, 531, 612
MboII GAAGA 4 cut(s) 39, 96, 447, 792
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 5 cut(s) 43, 94, 175, 211, 596
MlyI GAGTC 3 cut(s) 129, 555, 596
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 8 cut(s) 46, 154, 384, 478, 488, 517, 528, 715
Mph1103I ATGCAT 1 cut(s) 573
MroNI GCCGGC 1 cut(s) 785
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 3 cut(s) 155, 576, 831
MspI CCGG 3 cut(s) 194, 786, 790
MspR9I CCNGG 2 cut(s) 541, 791
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 791, 836
NaeI GCCGGC 1 cut(s) 787
NciI CCSGG 1 cut(s) 791
NdeII GATC 5 cut(s) 114, 216, 312, 531, 612
NgoMIV GCCGGC 1 cut(s) 785
NlaIV GGNNCC 3 cut(s) 122, 516, 838
NmuCI GTSAC 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 3 cut(s) 160, 463, 581
PagI TCATGA 2 cut(s) 520, 534
PceI AGGCCT 1 cut(s) 394
PciI ACATGT 2 cut(s) 156, 459
PciSI GCTCTTC 1 cut(s) 775
PdiI GCCGGC 1 cut(s) 787
PfeI GAWTC 2 cut(s) 83, 797
PkrI GCNGC 1 cut(s) 256
Ple19I CGATCG 1 cut(s) 219
PleI GAGTC 3 cut(s) 129, 555, 595
PpsI GAGTC 3 cut(s) 129, 555, 595
PpuMI RGGWCCY 2 cut(s) 120, 515
PscI ACATGT 2 cut(s) 156, 459
PsiI TTATAA 1 cut(s) 342
Psp5II RGGWCCY 2 cut(s) 120, 515
Psp6I CCWGG 1 cut(s) 539
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 122, 516, 838
PspPI GGNCC 2 cut(s) 120, 515
PspPPI RGGWCCY 2 cut(s) 120, 515
PvuI CGATCG 1 cut(s) 219
RsaI GTAC 2 cut(s) 161, 733
RsaNI GTAC 2 cut(s) 160, 732
RseI CAYNNNNRTG 3 cut(s) 155, 576, 831
SalI GTCGAC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 775
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 5 cut(s) 114, 216, 312, 531, 612
Sau96I GGNCC 2 cut(s) 120, 515
SchI GAGTC 3 cut(s) 129, 555, 596
ScrFI CCNGG 2 cut(s) 541, 791
SduI GDGCHC 1 cut(s) 673
SetI ASST 7 cut(s) 146, 520, 531, 542, 634, 697, 774
SfaNI GCATC 4 cut(s) 171, 214, 241, 360
SinI GGWCC 2 cut(s) 120, 515
SmiMI CAYNNNNRTG 3 cut(s) 155, 576, 831
Sse9I AATT 5 cut(s) 43, 94, 175, 211, 596
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 1 cut(s) 21
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 539, 789
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 215, 413, 768
TasI AATT 5 cut(s) 43, 94, 175, 211, 596
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 83, 797
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 5 cut(s) 288, 288, 470, 705, 824
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 120, 515
XapI RAATTY 2 cut(s) 175, 211
XceI RCATGY 3 cut(s) 160, 463, 581
XmiI GTMKAC 1 cut(s) 768
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.