RchiOBHm_Chr6g0310311

Glycosyl hydrolase family 10

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
67679515 .. 67683880
4366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27904

Sequence Viewer

Length: 2832 bp
ATGTGGACTCTCTTAGCCTTGTGCTGCAATCGTCTTAAGCATAAGCAAAAGCAAAAGCAGAAGCAGAACCATCCTCTGAGATCCGAAGAAGCCATGGAGAACCAAACGATTGAAAATGCCGCCGACGATAACCAGATTGTGAAACAGGATATGGTTAATTCAAGTAGTAGTCATGGTACCAATATCATAGTGAACCATGATTTCTGTGGAGGGCTGCACTCTTGGCACCCCAATTGCTGTGAGGGATATGTAGTTTCAGCTGATTCTGGCCACCCACAAGCAAATTCGGGTGGCAATTATGCAGTTGTTACTAATCGGAAAGAATGCTGGCAAGGATTGGAGCAGGATATCACTGGGAGGGTGTCCCCTGGTTTGACTTACTTGGTTTCGGCTTCTGTTGGGGTTTCCGGACCTCTCGTGGGATGTGTTGATGTCCTGGCAACATTGAAAATGGAATGCCAGGGTTCAGAAACTAAGTATTCGTTAGTTGGGAGAAGTTCTGTATCAAATGGGAAATGGGAAAAGTTGGAAGGCAAATTTTCACTGTCAACAATGCCTGATAAGGTTGTGTTTTACTTGGAAGGGCCTTCTCCTGGAATTGACTTGCTTATACAATCTGTAGTGATCTCTTGTTCCAATCCAAAGGGACGGCGGCACGGAAATGCCAGTGATGGAGATGAAGATATAGTCCTAAACCCAAAATTTGAGGATGGCTTGACTAATTGGACTGGAAGAGGCTGCAAGGTAGTCCTACACGGCTCGATGGGAGATGGGAAAATCGTCCCTCAATCTGGAAAAGTTTTTGCTGCTGCAACAGAACGCACACAGAGCTGGAATGGCATTCAGCAGGATATTACTGGAAGAGTGCAACGAAAGCTAGCTTACGAGGCCACTGCTGTTGTCCGGATATTTGGTAACAATGTCACGAGTTCTGATGTACGGGCTACCTTATGGGTGCAGTCACCAAATGGTCGTGAACAGTATATTGGCATTTCTAATGTACAGGCAACGGACAAGGATTGGGCACAGTTGAAGGGGAAATTCCTTTTAAACGGATCCCCATCCAAAGTAGTCGTTTATTTAGAAGGTCCACCAGCAGGAACTGATATTCTTGTCAACAGTTTCGTTGTCAAGCATGCACAGAAAGTCCCTCCTTCTTTTCCACCAGATATTGAGAATCCTGCTTTTGGAGTAAATATAATTGAGAACAGTAATCTAAGTAATGGCACCAATGGGTGGTTTCCTCTTGGTAATTGCACTTTGAGTGTGGGAACTGGTTCACCGCATATACTTCCTCCAATGGCGAGAGATAGCCTTGGCGCTCATGAACCTTTAAGTGGTCGCTTCATCCTTGTAACCAAGCGCACACAGACTTGGATGGGTCCTGCTCAGATGATTGGTGACAAATTGAAACTCTTTTTGACATATCAAGTATCTGCTTGGGTTCGGATTGGCGCTGGAGCAACTGGTCCACAAAATGTGAACGTTGCACTCGGTGTGGACAATCAGTGGGTGAACGGAGGGCAAGCTGAGGTGGGGGACAACAGATGGCATGAAATTGGTGGTTCCTTTAGAATTGAGAAGCAGCCATCCAAAGTTATGGTGTATATCCAAGGCCCTGCTTCAGGTGTAGACTTAATGGTTGCTGGACTTCAGATATTTCCTGTTGACAGACAAGCAAGATTTAGATACTTGAAGAGGCAGACTGAGAAGATCCGTAAGCGCGATGTTGTCCTGAAATTTTCAGGATTAGACTGGAGCAGTGCATATGGCAGCTTCGTGAAAATTAAACAATCACAAAACAGTTTTCCATTTGGGACATGCATAAGCAGAACAAACATTGACAATGAAGATTTTGTTGATTTCTTCGTGAAAAACTTTAACTGGTCTGTATTTGGAAATGAACTGAAGTGGTATTGGACTGAACCTCAGAAGGGAAATTTCAATTACAAGGATGCCGATGAGATGGTGGACTTGTGCAAGAGTCACAACATAGATATGCGTGGCCATTGTATCTATTGGGAAGTGGTGGACACGGTCCAGCAATGGATCCGTTCATTGAGCCAAAATGACTTGGCAACTGCTGTCCAAAGTCGAGTAACAGACCTCGTCACCCGCTACAAAGGGAAGTTCAGGCACTATGATGTCAATAATGAGATGCTGCATGGTTCATTCTATCAAGACAAATTGGGTAAAGATATCCGAGCCAACATGTTCAAGATGGCAAACCAATTGGATCCATCTGCACTCCTATTTGTGAATGATTATCATGTCGAGGATGGATGTGATACCAGATCAGCACCAGAAAAGTACATTGAACAGATCCTTGATTTGCAACTACAAGGTGCCCCTGTTGGTGGGATTGGAATTCAAGGACATATAGATAGTCCAGTAGGTCCAATTGTTTGTTCCGCTCTTGATAAATTGGGTATCCTTGGCCTTCCAATCTGGTTCACAGAACTTGATGTGTCATCGAGCAATGAATGTGTTCGTGCAGATGACTTGGAAGTGATGCTTAGGGAAGCATTTGCCAATCCTTCAGTAGAAGGCATAGTCCTGTGGGGTTTCTGGGAGCTGTTCATGAGTCGTGAAAACTCCCATCTAGTGAATGCCGAAGGCGACATCAACGAAGCTGGAAAGCGTTACTTGGAACTTAAGCAAGAGTGGCTATCTCATGCTCATGGGCACATTGATGAACAGGGACAGTTCACGTTTAGAGGCTTCCATGGAACATACAGTGTAGAGATTGCTACCCCCTCCAAGAAAGTTCTGAAGACATTTGTTGTTGACAAGGGTGATGACTCTCCATTTGAGGTTTCCATTGCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

943

Amino Acids

104.42

Weight (kDa)

6.14

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 61 - 197 1.3e-20 Carbohydrate binding domain
CBM_4_9 PF02018 228 - 366 1e-19 Carbohydrate binding domain
CBM_4_9 PF02018 399 - 542 1.1e-16 Carbohydrate binding domain
Glyco_hydro_10 PF00331 600 - 856 1e-46 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 4 cut(s) 176, 225, 1226, 2345
AccB7I CCANNNNNTGG 1 cut(s) 1236
AccBSI CCGCTC 1 cut(s) 2414
AccI GTMKAC 1 cut(s) 1632
AccII CGCG 1 cut(s) 1725
AccIII TCCGGA 2 cut(s) 407, 903
AciI CCGC 5 cut(s) 120, 652, 1283, 2116, 2412
AclI AACGTT 1 cut(s) 1485
AclWI GGATC 9 cut(s) 75, 1050, 1063, 1708, 2044, 2057, 2231, 2244, 2317
AcoI YGGCCR 2 cut(s) 268, 2005
AcsI RAATTY 7 cut(s) 283, 536, 701, 1040, 1739, 1939, 2367
AcuI CTGAAG 5 cut(s) 1608, 1637, 1928, 2523, 2792
AdeI CACNNNGTG 1 cut(s) 1496
AfaI GTAC 4 cut(s) 178, 939, 1002, 2312
AflII CTTAAG 2 cut(s) 35, 2654
AflIII ACRYGT 1 cut(s) 2211
AjnI CCWGG 4 cut(s) 367, 435, 459, 592
AjuI GAANNNNNNNTTGG 4 cut(s) 969, 1001, 2392, 2424
AluBI AGCT 8 cut(s) 260, 831, 877, 881, 1529, 1776, 2575, 2633
AluI AGCT 8 cut(s) 260, 831, 877, 881, 1529, 1776, 2575, 2633
AlwI GGATC 9 cut(s) 75, 1050, 1063, 1708, 2044, 2057, 2231, 2244, 2317
AlwNI CAGNNNCTG 1 cut(s) 1103
Aor13HI TCCGGA 2 cut(s) 407, 903
AoxI GGCC 6 cut(s) 268, 584, 888, 1615, 2005, 2437
ApeKI GCWGC 8 cut(s) 24, 214, 738, 806, 809, 1585, 1773, 2161
ApoI RAATTY 7 cut(s) 283, 536, 701, 1040, 1739, 1939, 2367
ArsI GACNNNNNNTTYG 2 cut(s) 2792, 2824
Asp700I GAANNNNTTC 2 cut(s) 1276, 2487
Asp718I GGTACC 1 cut(s) 176
AspLEI GCGC 4 cut(s) 1322, 1365, 1457, 1725
AspS9I GGNCC 8 cut(s) 410, 584, 1088, 1382, 1469, 1616, 2038, 2396
AsuHPI GGTGA 6 cut(s) 954, 1272, 1412, 1525, 2104, 2807
AsuNHI GCTAGC 1 cut(s) 877
AvaII GGWCC 6 cut(s) 410, 1088, 1382, 1469, 2038, 2396
BaeGI GKGCMC 3 cut(s) 1027, 2350, 2688
BalI TGGCCA 2 cut(s) 270, 2007
BamHI GGATCC 3 cut(s) 1055, 2049, 2236
BanI GGYRCC 4 cut(s) 176, 225, 1226, 2345
BauI CACGAG 2 cut(s) 416, 925
BbsI GAAGAC 1 cut(s) 2780
BbvCI CCTCAGC 1 cut(s) 1530
BbvI GCAGC 8 cut(s) 11, 201, 725, 793, 796, 1597, 1785, 2148
BceAI ACGGC 2 cut(s) 665, 772
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 4 cut(s) 369, 437, 461, 594
BciVI GTATCC 1 cut(s) 2441
BfaI CTAG 2 cut(s) 878, 2603
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 2 cut(s) 1323, 1458
BfrI CTTAAG 2 cut(s) 35, 2654
BfuI GTATCC 1 cut(s) 2441
Bme1390I CCNGG 4 cut(s) 369, 437, 461, 594
Bme18I GGWCC 6 cut(s) 410, 1088, 1382, 1469, 2038, 2396
BmgT120I GGNCC 8 cut(s) 410, 584, 1088, 1382, 1469, 1616, 2038, 2396
BmiI GGNNCC 9 cut(s) 178, 227, 1057, 1228, 1383, 1567, 2051, 2238, 2347
BmrFI CCNGG 4 cut(s) 369, 437, 461, 594
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 3 cut(s) 1945, 2148, 2502
BmtI GCTAGC 1 cut(s) 881
BmuI ACTGGG 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 2780
BpmI CTGGAG 2 cut(s) 1479, 1777
Bpu10I CCTNAGC 2 cut(s) 1530, 2516
BsaBI GATNNNNATC 1 cut(s) 1060
BsaJI CCNNGG 7 cut(s) 93, 367, 460, 1315, 1612, 2434, 2725
BsaWI WCCGGW 2 cut(s) 407, 903
Bse1I ACTGG 9 cut(s) 358, 666, 733, 862, 1279, 1471, 1760, 1889, 2390
Bse3DI GCAATG 3 cut(s) 2051, 2485, 2820
Bse8I GATNNNNATC 1 cut(s) 1060
BseAI TCCGGA 2 cut(s) 407, 903
BseBI CCWGG 4 cut(s) 369, 437, 461, 594
BseDI CCNNGG 7 cut(s) 93, 367, 460, 1315, 1612, 2434, 2725
BseJI GATNNNNATC 1 cut(s) 1060
BseMI GCAATG 3 cut(s) 2051, 2485, 2820
BseMII CTCAG 5 cut(s) 68, 1403, 1521, 1698, 1943
BseNI ACTGG 9 cut(s) 358, 666, 733, 862, 1279, 1471, 1760, 1889, 2390
BseSI GKGCMC 3 cut(s) 1027, 2350, 2688
BseXI GCAGC 8 cut(s) 11, 201, 725, 793, 796, 1597, 1785, 2148
BsgI GTGCAG 4 cut(s) 200, 977, 2229, 2514
Bsh1236I CGCG 1 cut(s) 1725
BshFI GGCC 6 cut(s) 270, 586, 890, 1617, 2007, 2439
BshNI GGYRCC 4 cut(s) 176, 225, 1226, 2345
BsiSI CCGG 2 cut(s) 408, 904
BslFI GGGAC 7 cut(s) 349, 660, 767, 1133, 1553, 1831, 2715
BsmFI GGGAC 7 cut(s) 349, 660, 767, 1133, 1553, 1831, 2715
BsmI GAATGC 4 cut(s) 329, 461, 840, 2614
BsnI GGCC 6 cut(s) 270, 586, 890, 1617, 2007, 2439
Bsp1286I GDGCHC 3 cut(s) 1027, 2350, 2688
Bsp13I TCCGGA 2 cut(s) 407, 903
Bsp1407I TGTACA 1 cut(s) 1000
Bsp143I GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
Bsp19I CCATGG 2 cut(s) 93, 2725
BspACI CCGC 5 cut(s) 120, 652, 1283, 2116, 2412
BspANI GGCC 6 cut(s) 270, 586, 890, 1617, 2007, 2439
BspCNI CTCAG 5 cut(s) 69, 1402, 1522, 1699, 1942
BspEI TCCGGA 2 cut(s) 407, 903
BspFNI CGCG 1 cut(s) 1725
BspHI TCATGA 2 cut(s) 1324, 2580
BspLI GGNNCC 9 cut(s) 178, 227, 1057, 1228, 1383, 1567, 2051, 2238, 2347
BspOI GCTAGC 1 cut(s) 881
BspPI GGATC 9 cut(s) 75, 1050, 1063, 1708, 2044, 2057, 2231, 2244, 2317
BspT107I GGYRCC 4 cut(s) 176, 225, 1226, 2345
BspTI CTTAAG 2 cut(s) 35, 2654
BsrBI CCGCTC 1 cut(s) 2414
BsrDI GCAATG 3 cut(s) 2051, 2485, 2820
BsrGI TGTACA 1 cut(s) 1000
BsrI ACTGG 9 cut(s) 358, 666, 733, 862, 1279, 1471, 1760, 1889, 2390
BssECI CCNNGG 7 cut(s) 93, 367, 460, 1315, 1612, 2434, 2725
BssMI GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
BssSI CACGAG 2 cut(s) 416, 925
BssT1I CCWWGG 5 cut(s) 93, 1315, 1612, 2434, 2725
Bst2BI CACGAG 2 cut(s) 416, 925
Bst2UI CCWGG 4 cut(s) 369, 437, 461, 594
Bst4CI ACNGT 9 cut(s) 546, 981, 1029, 1121, 1211, 1805, 2038, 2706, 2738
Bst6I CTCTTC 3 cut(s) 727, 856, 1691
BstAFI CTTAAG 2 cut(s) 35, 2654
BstAUI TGTACA 1 cut(s) 1000
BstC8I GCNNGC 4 cut(s) 329, 879, 1137, 1527
BstDEI CTNAG 9 cut(s) 13, 77, 474, 1217, 1389, 1530, 1707, 1929, 2516
BstDSI CCRYGG 2 cut(s) 93, 2725
BstENI CCTNNNNNAGG 1 cut(s) 1623
BstFNI CGCG 1 cut(s) 1725
BstH2I RGCGCY 2 cut(s) 1323, 1458
BstHHI GCGC 4 cut(s) 1322, 1365, 1457, 1725
BstKTI GATC 8 cut(s) 83, 627, 1058, 1716, 2052, 2239, 2297, 2325
BstMBI GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
BstMWI GCNNNNNNNGC 6 cut(s) 223, 828, 837, 874, 887, 2665
BstNI CCWGG 4 cut(s) 369, 437, 461, 594
BstNSI RCATGY 3 cut(s) 1139, 1824, 2215
BstSCI CCNGG 4 cut(s) 367, 435, 459, 592
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 3 cut(s) 1027, 2350, 2688
BstUI CGCG 1 cut(s) 1725
BstV1I GCAGC 8 cut(s) 11, 201, 725, 793, 796, 1597, 1785, 2148
BstV2I GAAGAC 1 cut(s) 2780
BstX2I RGATCY 6 cut(s) 80, 1055, 1713, 2049, 2236, 2322
BstXI CCANNNNNNTGG 1 cut(s) 1600
BstYI RGATCY 6 cut(s) 80, 1055, 1713, 2049, 2236, 2322
BsuI GTATCC 1 cut(s) 2441
BsuRI GGCC 6 cut(s) 270, 586, 890, 1617, 2007, 2439
BtgI CCRYGG 2 cut(s) 93, 2725
BtgZI GCGATG 1 cut(s) 1740
BtsI GCAGTG 2 cut(s) 891, 1768
BtsIMutI CAGTG 7 cut(s) 351, 542, 673, 891, 1514, 1768, 2743
Cac8I GCNNGC 4 cut(s) 329, 879, 1137, 1527
CaiI CAGNNNCTG 1 cut(s) 1103
CciI TCATGA 2 cut(s) 1324, 2580
CfoI GCGC 4 cut(s) 1322, 1365, 1457, 1725
Cfr13I GGNCC 8 cut(s) 410, 584, 1088, 1382, 1469, 1616, 2038, 2396
Csp6I GTAC 4 cut(s) 177, 938, 1001, 2311
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviQI GTAC 4 cut(s) 177, 938, 1001, 2311
DdeI CTNAG 9 cut(s) 13, 77, 474, 1217, 1389, 1530, 1707, 1929, 2516
DpnI GATC 8 cut(s) 82, 626, 1057, 1715, 2051, 2238, 2296, 2324
DpnII GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
DraI TTTAAA 1 cut(s) 1050
DraIII CACNNNGTG 1 cut(s) 1496
EaeI YGGCCR 2 cut(s) 268, 2005
Eam1104I CTCTTC 3 cut(s) 727, 856, 1691
EarI CTCTTC 3 cut(s) 727, 856, 1691
Eco130I CCWWGG 5 cut(s) 93, 1315, 1612, 2434, 2725
Eco32I GATATC 2 cut(s) 349, 2200
Eco47I GGWCC 6 cut(s) 410, 1088, 1382, 1469, 2038, 2396
Eco57I CTGAAG 5 cut(s) 1608, 1637, 1928, 2523, 2792
EcoNI CCTNNNNNAGG 1 cut(s) 1623
EcoO109I RGGNCCY 3 cut(s) 584, 1382, 1616
EcoRI GAATTC 1 cut(s) 2367
EcoRII CCWGG 4 cut(s) 367, 435, 459, 592
EcoRV GATATC 2 cut(s) 349, 2200
EcoT14I CCWWGG 5 cut(s) 93, 1315, 1612, 2434, 2725
EcoT22I ATGCAT 1 cut(s) 1826
ErhI CCWWGG 5 cut(s) 93, 1315, 1612, 2434, 2725
FalI AAGNNNNNCTT 4 cut(s) 2499, 2531, 2630, 2662
FaqI GGGAC 7 cut(s) 349, 660, 767, 1133, 1553, 1831, 2715
FauI CCCGC 1 cut(s) 2123
FauNDI CATATG 1 cut(s) 1768
FblI GTMKAC 1 cut(s) 1632
FspBI CTAG 2 cut(s) 878, 2603
GlaI GCGC 4 cut(s) 1321, 1364, 1456, 1724
GsuI CTGGAG 2 cut(s) 1479, 1777
HaeII RGCGCY 2 cut(s) 1323, 1458
HaeIII GGCC 6 cut(s) 270, 586, 890, 1617, 2007, 2439
HapII CCGG 2 cut(s) 408, 904
HhaI GCGC 4 cut(s) 1322, 1365, 1457, 1725
Hin6I GCGC 4 cut(s) 1320, 1363, 1455, 1723
HinP1I GCGC 4 cut(s) 1320, 1363, 1455, 1723
HincII GTYRAC 4 cut(s) 549, 1117, 1669, 2788
HindII GTYRAC 4 cut(s) 549, 1117, 1669, 2788
HinfI GANTC 6 cut(s) 7, 263, 1177, 1984, 2584, 2801
HpaII CCGG 2 cut(s) 408, 904
HphI GGTGA 6 cut(s) 954, 1272, 1412, 1525, 2104, 2807
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 9 cut(s) 546, 981, 1029, 1121, 1211, 1805, 2038, 2706, 2738
HpyCH4IV ACGT 2 cut(s) 1485, 2711
HpyF10VI GCNNNNNNNGC 6 cut(s) 223, 828, 837, 874, 887, 2665
HpyF3I CTNAG 9 cut(s) 13, 77, 474, 1217, 1389, 1530, 1707, 1929, 2516
HpySE526I ACGT 2 cut(s) 1485, 2711
HspAI GCGC 4 cut(s) 1320, 1363, 1455, 1723
Kpn2I TCCGGA 2 cut(s) 407, 903
KpnI GGTACC 1 cut(s) 180
Kzo9I GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
LmnI GCTCC 4 cut(s) 340, 1460, 1758, 2572
Lsp1109I GCAGC 8 cut(s) 11, 201, 725, 793, 796, 1597, 1785, 2148
LweI GCATC 3 cut(s) 1945, 2148, 2502
MaeI CTAG 2 cut(s) 878, 2603
MaeII ACGT 2 cut(s) 1485, 2711
MalI GATC 8 cut(s) 82, 626, 1057, 1715, 2051, 2238, 2296, 2324
MbiI CCGCTC 1 cut(s) 2414
MboI GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
MboII GAAGA 9 cut(s) 98, 692, 744, 873, 1708, 1723, 1858, 1862, 2785
MfeI CAATTG 3 cut(s) 232, 2231, 2400
MflI RGATCY 6 cut(s) 80, 1055, 1713, 2049, 2236, 2322
MhlI GDGCHC 3 cut(s) 1027, 2350, 2688
MlsI TGGCCA 2 cut(s) 270, 2007
MluNI TGGCCA 2 cut(s) 270, 2007
MlyI GAGTC 3 cut(s) 1993, 2593, 2795
MmeI TCCRAC 1 cut(s) 507
Mox20I TGGCCA 2 cut(s) 270, 2007
Mph1103I ATGCAT 1 cut(s) 1826
MroI TCCGGA 2 cut(s) 407, 903
MroXI GAANNNNTTC 2 cut(s) 1276, 2487
MscI TGGCCA 2 cut(s) 270, 2007
MseI TTAA 8 cut(s) 36, 156, 1049, 1334, 1637, 1788, 1881, 2655
MslI CAYNNNNRTG 5 cut(s) 660, 1997, 2142, 2679, 2691
Msp20I TGGCCA 2 cut(s) 270, 2007
MspA1I CMGCKG 1 cut(s) 260
MspCI CTTAAG 2 cut(s) 35, 2654
MspI CCGG 2 cut(s) 408, 904
MspR9I CCNGG 4 cut(s) 369, 437, 461, 594
MunI CAATTG 3 cut(s) 232, 2231, 2400
Mva1269I GAATGC 4 cut(s) 329, 461, 840, 2614
MvaI CCWGG 4 cut(s) 369, 437, 461, 594
MvnI CGCG 1 cut(s) 1725
MwoI GCNNNNNNNGC 6 cut(s) 223, 828, 837, 874, 887, 2665
NcoI CCATGG 2 cut(s) 93, 2725
NdeI CATATG 1 cut(s) 1768
NdeII GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
NheI GCTAGC 1 cut(s) 877
NlaIV GGNNCC 9 cut(s) 178, 227, 1057, 1228, 1383, 1567, 2051, 2238, 2347
NmuCI GTSAC 5 cut(s) 922, 960, 1400, 1985, 2110
NsiI ATGCAT 1 cut(s) 1826
NspI RCATGY 3 cut(s) 1139, 1824, 2215
PaeI GCATGC 1 cut(s) 1139
PagI TCATGA 2 cut(s) 1324, 2580
PciI ACATGT 1 cut(s) 2211
PctI GAATGC 4 cut(s) 329, 461, 840, 2614
PdmI GAANNNNTTC 2 cut(s) 1276, 2487
PfeI GAWTC 2 cut(s) 263, 1177
PflFI GACNNNGTC 2 cut(s) 2036, 2108
PflMI CCANNNNNTGG 1 cut(s) 1236
PfoI TCCNGGA 1 cut(s) 592
PleI GAGTC 3 cut(s) 1992, 2592, 2795
PpsI GAGTC 3 cut(s) 1992, 2592, 2795
PpuMI RGGWCCY 1 cut(s) 1382
PscI ACATGT 1 cut(s) 2211
Psp1406I AACGTT 1 cut(s) 1485
Psp5II RGGWCCY 1 cut(s) 1382
Psp6I CCWGG 4 cut(s) 367, 435, 459, 592
PspGI CCWGG 4 cut(s) 367, 435, 459, 592
PspN4I GGNNCC 9 cut(s) 178, 227, 1057, 1228, 1383, 1567, 2051, 2238, 2347
PspPI GGNCC 8 cut(s) 410, 584, 1088, 1382, 1469, 1616, 2038, 2396
PspPPI RGGWCCY 1 cut(s) 1382
PstNI CAGNNNCTG 1 cut(s) 1103
PsuI RGATCY 6 cut(s) 80, 1055, 1713, 2049, 2236, 2322
PsyI GACNNNGTC 2 cut(s) 2036, 2108
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 4 cut(s) 178, 939, 1002, 2312
RsaNI GTAC 4 cut(s) 177, 938, 1001, 2311
RseI CAYNNNNRTG 5 cut(s) 660, 1997, 2142, 2679, 2691
SaqAI TTAA 8 cut(s) 36, 156, 1049, 1334, 1637, 1788, 1881, 2655
Sau3AI GATC 8 cut(s) 80, 624, 1055, 1713, 2049, 2236, 2294, 2322
Sau96I GGNCC 8 cut(s) 410, 584, 1088, 1382, 1469, 1616, 2038, 2396
SchI GAGTC 3 cut(s) 1993, 2593, 2795
ScrFI CCNGG 4 cut(s) 369, 437, 461, 594
SduI GDGCHC 3 cut(s) 1027, 2350, 2688
SfaNI GCATC 3 cut(s) 1945, 2148, 2502
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 6 cut(s) 410, 1088, 1382, 1469, 2038, 2396
SmiMI CAYNNNNRTG 5 cut(s) 660, 1997, 2142, 2679, 2691
SmlI CTYRAG 2 cut(s) 35, 2654
SmoI CTYRAG 2 cut(s) 35, 2654
SphI GCATGC 1 cut(s) 1139
SsiI CCGC 5 cut(s) 120, 652, 1283, 2116, 2412
SspMI CTAG 2 cut(s) 878, 2603
StyD4I CCNGG 4 cut(s) 367, 435, 459, 592
StyI CCWWGG 5 cut(s) 93, 1315, 1612, 2434, 2725
TaaI ACNGT 9 cut(s) 546, 981, 1029, 1121, 1211, 1805, 2038, 2706, 2738
TaiI ACGT 2 cut(s) 1488, 2714
TaqI TCGA 4 cut(s) 761, 2095, 2274, 2474
TatI WGTACW 2 cut(s) 1000, 2310
TauI GCSGC 2 cut(s) 122, 655
TfiI GAWTC 2 cut(s) 263, 1177
Tru1I TTAA 8 cut(s) 36, 156, 1049, 1334, 1637, 1788, 1881, 2655
Tru9I TTAA 8 cut(s) 36, 156, 1049, 1334, 1637, 1788, 1881, 2655
TscAI CASTG 7 cut(s) 358, 549, 673, 898, 1514, 1768, 2743
TseFI GTSAC 5 cut(s) 922, 960, 1400, 1985, 2110
TseI GCWGC 8 cut(s) 24, 214, 738, 806, 809, 1585, 1773, 2161
Tsp45I GTSAC 5 cut(s) 922, 960, 1400, 1985, 2110
TspGWI ACGGA 6 cut(s) 672, 1025, 1068, 1533, 1706, 2042
TspRI CASTG 7 cut(s) 358, 549, 673, 898, 1514, 1768, 2743
Tth111I GACNNNGTC 2 cut(s) 2036, 2108
Van91I CCANNNNNTGG 1 cut(s) 1236
Vha464I CTTAAG 2 cut(s) 35, 2654
VpaK11BI GGWCC 6 cut(s) 410, 1088, 1382, 1469, 2038, 2396
XagI CCTNNNNNAGG 1 cut(s) 1623
XapI RAATTY 7 cut(s) 283, 536, 701, 1040, 1739, 1939, 2367
XceI RCATGY 3 cut(s) 1139, 1824, 2215
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 1632
XmnI GAANNNNTTC 2 cut(s) 1276, 2487
XspI CTAG 2 cut(s) 878, 2603
Zsp2I ATGCAT 1 cut(s) 1826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.