Rorug06G0378900

Glycosyl hydrolase family 10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006231
Physical Location & Seq
Reverse (-)
52488579 .. 52488957
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0378900.1

Sequence Viewer

Length: 258 bp
ATGGATCAAATGAGTAAAACTTGGTGGAGCGATGCAGGTTGGGTGGTTCGAGATCATGAAGGTCATTTCCTCCGTGGTGGTTACAGTGGGTGTTTCATAAGTGAATCTGCACTTATGGTGGAGGCAGTGGCAGTGCGTGATGGTTTGGAGGGGTGCCTTGCGGGTGGTTGGAAGAAAGTGGTGATTGAAACTGATGCAAAGTTGGTGATCGATTACTTGAACAACATAATAGAACCTGATGCCTCTATAGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM_4_9 Glyco_hydro_10

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

4.55

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 10 - 75 3.2e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 153
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 188, 220
AlwI GGATC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 193, 217
BanI GGYRCC 1 cut(s) 153
BccI CCATC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 155
BmsI GCATC 3 cut(s) 22, 184, 229
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 249
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 153
BshVI ATCGAT 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 249
Bsp143I GATC 3 cut(s) 4, 52, 207
BspACI CCGC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 3 cut(s) 4, 52, 207
Bst4CI ACNGT 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 73
BstKTI GATC 3 cut(s) 7, 55, 210
BstMBI GATC 3 cut(s) 4, 52, 207
BstSFI CTRYAG 1 cut(s) 246
Bsu15I ATCGAT 1 cut(s) 210
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 132, 138
BtsIMutI CAGTG 3 cut(s) 91, 132, 138
BveI ACCTGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 210
CviAII CATG 1 cut(s) 56
DpnI GATC 3 cut(s) 6, 54, 209
DpnII GATC 3 cut(s) 4, 52, 207
FaeI CATG 1 cut(s) 59
FaiI YATR 5 cut(s) 57, 98, 116, 227, 248
FatI CATG 1 cut(s) 55
FauI CCCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 104
HphI GGTGA 2 cut(s) 193, 217
Hpy188III TCNNGA 2 cut(s) 50, 56
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 35, 110, 197
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 3 cut(s) 4, 52, 207
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 2 cut(s) 21, 249
LweI GCATC 3 cut(s) 22, 184, 229
MaeIII GTNAC 1 cut(s) 80
MalI GATC 3 cut(s) 6, 54, 209
MboI GATC 3 cut(s) 4, 52, 207
MboII GAAGA 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 80, 115, 142, 253
NdeII GATC 3 cut(s) 4, 52, 207
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 155
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 4, 52, 207
SetI ASST 3 cut(s) 40, 64, 238
SfaNI GCATC 3 cut(s) 22, 184, 229
SfcI CTRYAG 1 cut(s) 246
SsiI CCGC 1 cut(s) 161
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 49, 210
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 3 cut(s) 91, 132, 138
TspDTI ATGAA 2 cut(s) 72, 85
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 91, 132, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.