RchiOBHm_Chr7g0190611

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
9632076 .. 9634525
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17026

Sequence Viewer

Length: 1695 bp
ATGGCGAAATCAAGAACGAGCCCCAAGACAACATCACGAAACCCATCACCACCGCCAATATTCCTCTTCCACTACTTGCTCCCAGTCTCTGCACTCACCACCCTCCTCTTCTCCCCCAAAACGCACCGTTTCAGACTCCCCAAACCCTCCTCCTCCTCCTCATCATCATCATCTCCCTCAATCCTCCTTCTCTGTTTCCTCTTCTCCCTCACTTTCTTGGGAATCTCAATCCTCAATCTCATCCCCACCTACTCTGCCATCATCCCCTGTTCCCACTCTGCTGCCTCCACTCCTTCCCTCTCCCCCATTTCCCCGAAAACGTCTTCTTCGGGCTTTATCGACGACCCGAGGCTGCTTTCGGATACTGTCATGGTGCCACTGCCGGCCCATGGGGCCTTGGGGGCTAATCTTTCCTCGGAGGAGAAGGAATTCTGGGAGCAGCCCAATGGGGAAGGGTTTAGGCCCTGCTTGGATTTCGGCCTCGGGTATCGAATATCGTCTGCCAAGATTGTGAAAGAGAGGAGGAGGTTCTTGCTGGTGGTGGCCTCTGGGGGTCTGAACCAGCAGAGGAATCAGATTGTGGATGCTGTTGTCATTGCTAGGGTTCTTGAGGCTGTTTTGGTTGTGCCTGTTTTGCAGGTCAATTTGATCTGGGGAGACGAAAGTGAGTTTTCAGATATTTTCGATGTGGCACACTTCAAGAGGACTTTACAAGCTGATGTGCGAGTTGTGTCAAATCTTCCCTCTACACATTTGATGTCAAGACAGAAAATTATGAACAAGATCCCTCACGATGTTACTCCGCAGTGGATACATGCCAGATTCTATAATCAACTGAATCAAGATGGCCTTCTTGTGCTAAAAGGGCTGGATTCTAAGCTCTCAAAGAATCTCCCCCCTGATCTTCAGAAGCTTCGGTGTAAGGTTGCTTTCCATGCATTGAGATTTGCAGCACCAATTCAAGCACTAGGGAATCAATTAGCAAAGAGAATGTGGATTGAAGGGCCTTACATTGCACTCCATCTCCGGCTAGAGAAGGATGTGTGGGTCAGAACAGGATGTCTCACCGGATTAGGCCCTGAATATGATGACATTATCACAAAGGTTCGGGAGTCTCAACCCGAATATCTTACAGGACGATTGAACATGACCTACAACCAAAGGAGACTTGCTGGTCTCTGTCCCCTAAATGCATTAGAAATAGCAAGGCTTTTGAAGGGTCTAGGAGCGCCAAGAAGTGCGCGGATATATAGTGCAGGAGGTGAGGCATTTGGGGAAAGCAGGGCTCTGCAGCCACTTGTGGCAGAATTTCCAAATTTGGTGACAAAGGAGATGTTGGCGAAAGAAGGAGAGCTCTCTCCATACATGAACAAGCCTTCAGCTCTGGCTGCCATTGACTACCTTGTCTCTCTAAGCAGTGATGTCTTTGTGCCTTCCCATGGTGGAAACATGGGCCGAGCAATGCAGGGTCACCGTGCTTATGTGGGACATAGAAAGTTCATAAAGCCGAACAAGAGAGCAATGATGCCTCTGTTTGAAGATACATCGATTAGTGATGATGAGTTCGGAAGCATCATGAGGGAGCTGCATAAGTCTCAGGGGAAGCCTGAGCCAAGAGGTTACATGAGAAACCGAGATGTGATTTCGCTCCCTGTGCCTGAGTGCATGTGTAAACACAAAACAGGCATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

564

Amino Acids

62.56

Weight (kDa)

9.57

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 177 - 494 8.3e-87 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012228)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1173, 1403
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 373
AccII CGCG 1 cut(s) 1243
AciI CCGC 3 cut(s) 53, 803, 1243
AclWI GGATC 1 cut(s) 778
AcsI RAATTY 3 cut(s) 428, 1307, 1315
AcuI CTGAAG 2 cut(s) 890, 1362
AfiI CCNNNNNNNGG 2 cut(s) 389, 1439
AgsI TTSAA 6 cut(s) 700, 962, 1001, 1144, 1216, 1538
AluBI AGCT 6 cut(s) 716, 880, 913, 1354, 1382, 1585
AluI AGCT 6 cut(s) 716, 880, 913, 1354, 1382, 1585
Alw21I GWGCWC 1 cut(s) 1356
Alw26I GTCTC 8 cut(s) 91, 651, 1067, 1119, 1159, 1181, 1411, 1599
AlwI GGATC 1 cut(s) 778
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 2 cut(s) 346, 482
AoxI GGCC 9 cut(s) 384, 393, 461, 478, 543, 847, 1004, 1075, 1453
ApeKI GCWGC 7 cut(s) 281, 352, 439, 950, 1291, 1388, 1585
ApoI RAATTY 3 cut(s) 428, 1307, 1315
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 2 cut(s) 1231, 1243
AspS9I GGNCC 6 cut(s) 385, 393, 462, 1004, 1076, 1453
AsuHPI GGTGA 6 cut(s) 39, 88, 1057, 1274, 1333, 1463
AvaI CYCGRG 2 cut(s) 346, 482
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 3 cut(s) 23, 1288, 1356
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 1356
BbvI GCAGC 7 cut(s) 268, 339, 451, 962, 1303, 1375, 1572
BccI CCATC 4 cut(s) 52, 266, 839, 1029
BciVI GTATCC 2 cut(s) 355, 804
BcoDI GTCTC 8 cut(s) 91, 651, 1067, 1119, 1159, 1181, 1411, 1599
BfaI CTAG 5 cut(s) 600, 968, 1031, 1223, 1693
BfmI CTRYAG 1 cut(s) 1289
BfoI RGCGCY 1 cut(s) 1232
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 2 cut(s) 355, 804
BglI GCCNNNNNGGC 2 cut(s) 392, 401
BisI GCNGC 7 cut(s) 282, 353, 440, 951, 1292, 1389, 1586
BlsI GCNGC 7 cut(s) 283, 354, 441, 952, 1293, 1390, 1587
BmeT110I CYCGRG 2 cut(s) 346, 482
BmgT120I GGNCC 6 cut(s) 385, 393, 462, 1004, 1076, 1453
BmiI GGNNCC 2 cut(s) 375, 394
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 3 cut(s) 574, 1515, 1581
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 1608
BpuEI CTTGAG 1 cut(s) 629
Bsa29I ATCGAT 1 cut(s) 1547
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 6 cut(s) 347, 388, 396, 414, 481, 1438
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 1439
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 4 cut(s) 594, 1011, 1467, 1527
BseCI ATCGAT 1 cut(s) 1547
BseDI CCNNGG 6 cut(s) 347, 388, 396, 414, 481, 1438
BseGI GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BseLI CCNNNNNNNGG 2 cut(s) 389, 1439
BseMI GCAATG 4 cut(s) 594, 1011, 1467, 1527
BseMII CTCAG 3 cut(s) 1599, 1610, 1650
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 8 cut(s) 95, 139, 142, 145, 148, 434, 535, 538
BseXI GCAGC 7 cut(s) 268, 339, 451, 962, 1303, 1375, 1572
BsgI GTGCAG 2 cut(s) 75, 1275
Bsh1236I CGCG 1 cut(s) 1243
BshFI GGCC 9 cut(s) 386, 395, 463, 480, 545, 849, 1006, 1077, 1455
BshNI GGYRCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 1547
BsiHKAI GWGCWC 1 cut(s) 1356
BsiHKCI CYCGRG 2 cut(s) 346, 482
BsiSI CCGG 3 cut(s) 383, 1027, 1068
BslFI GGGAC 2 cut(s) 1167, 1500
BslI CCNNNNNNNGG 2 cut(s) 389, 1439
BsmAI GTCTC 8 cut(s) 91, 651, 1067, 1119, 1159, 1181, 1411, 1599
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 2 cut(s) 1167, 1500
BsnI GGCC 9 cut(s) 386, 395, 463, 480, 545, 849, 1006, 1077, 1455
Bso31I GGTCTC 1 cut(s) 1181
BsoBI CYCGRG 2 cut(s) 346, 482
Bsp1286I GDGCHC 3 cut(s) 23, 1288, 1356
Bsp143I GATC 3 cut(s) 648, 783, 901
Bsp19I CCATGG 2 cut(s) 388, 1438
BspACI CCGC 3 cut(s) 53, 803, 1243
BspANI GGCC 9 cut(s) 386, 395, 463, 480, 545, 849, 1006, 1077, 1455
BspCNI CTCAG 3 cut(s) 1600, 1609, 1651
BspDI ATCGAT 1 cut(s) 1547
BspFNI CGCG 1 cut(s) 1243
BspHI TCATGA 1 cut(s) 1575
BspLI GGNNCC 2 cut(s) 375, 394
BspMAI CTGCAG 1 cut(s) 1293
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 1181
BsrDI GCAATG 4 cut(s) 594, 1011, 1467, 1527
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 6 cut(s) 347, 388, 396, 414, 481, 1438
BssMI GATC 3 cut(s) 648, 783, 901
BssT1I CCWWGG 3 cut(s) 388, 396, 1438
Bst4CI ACNGT 3 cut(s) 128, 367, 1475
Bst6I CTCTTC 3 cut(s) 71, 113, 206
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 876, 1412, 1596, 1608, 1659
BstDSI CCRYGG 2 cut(s) 388, 1438
BstEII GGTNACC 1 cut(s) 1469
BstF5I GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BstFNI CGCG 1 cut(s) 1243
BstH2I RGCGCY 1 cut(s) 1232
BstHHI GCGC 2 cut(s) 1231, 1243
BstKTI GATC 3 cut(s) 651, 786, 904
BstMAI GTCTC 8 cut(s) 91, 651, 1067, 1119, 1159, 1181, 1411, 1599
BstMBI GATC 3 cut(s) 648, 783, 901
BstMWI GCNNNNNNNGC 7 cut(s) 392, 401, 634, 865, 935, 1388, 1654
BstNSI RCATGY 2 cut(s) 818, 1669
BstPI GGTNACC 1 cut(s) 1469
BstSFI CTRYAG 1 cut(s) 1289
BstUI CGCG 1 cut(s) 1243
BstV1I GCAGC 7 cut(s) 268, 339, 451, 962, 1303, 1375, 1572
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
Bsu15I ATCGAT 1 cut(s) 1547
BsuI GTATCC 2 cut(s) 355, 804
BsuRI GGCC 9 cut(s) 386, 395, 463, 480, 545, 849, 1006, 1077, 1455
BsuTUI ATCGAT 1 cut(s) 1547
BtgI CCRYGG 2 cut(s) 388, 1438
BtsCI GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BtsI GCAGTG 3 cut(s) 377, 812, 1423
BtsIMutI CAGTG 3 cut(s) 377, 812, 1423
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 1575
CfoI GCGC 2 cut(s) 1231, 1243
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 6 cut(s) 385, 393, 462, 1004, 1076, 1453
ClaI ATCGAT 1 cut(s) 1547
DdeI CTNAG 5 cut(s) 876, 1412, 1596, 1608, 1659
DpnI GATC 3 cut(s) 650, 785, 903
DpnII GATC 3 cut(s) 648, 783, 901
DrdI GACNNNNNNGTC 2 cut(s) 1173, 1403
DseDI GACNNNNNNGTC 2 cut(s) 1173, 1403
Eam1104I CTCTTC 3 cut(s) 71, 113, 206
EarI CTCTTC 3 cut(s) 71, 113, 206
Ecl136II GAGCTC 1 cut(s) 1354
Eco130I CCWWGG 3 cut(s) 388, 396, 1438
Eco24I GRGCYC 3 cut(s) 23, 1288, 1356
Eco31I GGTCTC 1 cut(s) 1181
Eco53kI GAGCTC 1 cut(s) 1354
Eco57I CTGAAG 2 cut(s) 890, 1362
Eco88I CYCGRG 2 cut(s) 346, 482
Eco91I GGTNACC 1 cut(s) 1469
EcoICRI GAGCTC 1 cut(s) 1354
EcoO109I RGGNCCY 4 cut(s) 393, 462, 1004, 1076
EcoO65I GGTNACC 1 cut(s) 1469
EcoRI GAATTC 1 cut(s) 428
EcoT14I CCWWGG 3 cut(s) 388, 396, 1438
EcoT22I ATGCAT 2 cut(s) 940, 1195
EcoT38I GRGCYC 3 cut(s) 23, 1288, 1356
ErhI CCWWGG 3 cut(s) 388, 396, 1438
Esp3I CGTCTC 1 cut(s) 651
FalI AAGNNNNNCTT 2 cut(s) 834, 866
FaqI GGGAC 2 cut(s) 1167, 1500
Fnu4HI GCNGC 7 cut(s) 282, 353, 440, 951, 1292, 1389, 1586
FokI GGATG 5 cut(s) 227, 248, 596, 1052, 1071
FriOI GRGCYC 3 cut(s) 23, 1288, 1356
Fsp4HI GCNGC 7 cut(s) 282, 353, 440, 951, 1292, 1389, 1586
FspBI CTAG 5 cut(s) 600, 968, 1031, 1223, 1693
GlaI GCGC 2 cut(s) 1230, 1242
GluI GCNGC 7 cut(s) 282, 353, 440, 951, 1292, 1389, 1586
HaeII RGCGCY 1 cut(s) 1232
HaeIII GGCC 9 cut(s) 386, 395, 463, 480, 545, 849, 1006, 1077, 1455
HapII CCGG 3 cut(s) 383, 1027, 1068
HhaI GCGC 2 cut(s) 1231, 1243
Hin6I GCGC 2 cut(s) 1229, 1241
HinP1I GCGC 2 cut(s) 1229, 1241
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 9 cut(s) 135, 222, 571, 822, 838, 872, 889, 973, 1112
HpaII CCGG 3 cut(s) 383, 1027, 1068
HphI GGTGA 6 cut(s) 39, 88, 1057, 1274, 1333, 1463
Hpy166II GTNNAC 1 cut(s) 1673
Hpy188I TCNGA 9 cut(s) 134, 361, 418, 558, 576, 676, 909, 1052, 1568
Hpy188III TCNNGA 9 cut(s) 12, 36, 608, 700, 762, 791, 842, 1109, 1576
Hpy8I GTNNAC 1 cut(s) 1673
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 3 cut(s) 128, 367, 1475
HpyCH4IV ACGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 7 cut(s) 392, 401, 634, 865, 935, 1388, 1654
HpyF3I CTNAG 5 cut(s) 876, 1412, 1596, 1608, 1659
HpySE526I ACGT 1 cut(s) 320
HspAI GCGC 2 cut(s) 1229, 1241
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Kzo9I GATC 3 cut(s) 648, 783, 901
LmnI GCTCC 5 cut(s) 84, 436, 1226, 1582, 1653
Lsp1109I GCAGC 7 cut(s) 268, 339, 451, 962, 1303, 1375, 1572
LweI GCATC 3 cut(s) 574, 1515, 1581
MaeI CTAG 5 cut(s) 600, 968, 1031, 1223, 1693
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 4 cut(s) 796, 1321, 1469, 1619
MalI GATC 3 cut(s) 650, 785, 903
MboI GATC 3 cut(s) 648, 783, 901
MboII GAAGA 8 cut(s) 58, 100, 193, 315, 318, 731, 896, 1550
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 3 cut(s) 23, 1288, 1356
MluCI AATT 7 cut(s) 428, 643, 771, 957, 977, 1307, 1315
MlyI GAGTC 2 cut(s) 129, 1121
Mph1103I ATGCAT 2 cut(s) 940, 1195
MroNI GCCGGC 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 428
MspI CCGG 3 cut(s) 383, 1027, 1068
MvnI CGCG 1 cut(s) 1243
MwoI GCNNNNNNNGC 7 cut(s) 392, 401, 634, 865, 935, 1388, 1654
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 2 cut(s) 388, 1438
NdeII GATC 3 cut(s) 648, 783, 901
NgoMIV GCCGGC 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 375, 394
NmeAIII GCCGAG 1 cut(s) 1481
NmuCI GTSAC 2 cut(s) 1321, 1469
NsiI ATGCAT 2 cut(s) 940, 1195
NspI RCATGY 2 cut(s) 818, 1669
PagI TCATGA 1 cut(s) 1575
PdiI GCCGGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 7 cut(s) 222, 571, 822, 838, 872, 889, 973
PkrI GCNGC 7 cut(s) 283, 354, 441, 952, 1293, 1390, 1587
PleI GAGTC 2 cut(s) 129, 1120
PpsI GAGTC 2 cut(s) 129, 1120
Psp124BI GAGCTC 1 cut(s) 1356
PspEI GGTNACC 1 cut(s) 1469
PspN4I GGNNCC 2 cut(s) 375, 394
PspPI GGNCC 6 cut(s) 385, 393, 462, 1004, 1076, 1453
PsrI GAACNNNNNNTAC 2 cut(s) 1136, 1168
PstI CTGCAG 1 cut(s) 1293
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 783
SacI GAGCTC 1 cut(s) 1356
SatI GCNGC 7 cut(s) 282, 353, 440, 951, 1292, 1389, 1586
Sau3AI GATC 3 cut(s) 648, 783, 901
Sau96I GGNCC 6 cut(s) 385, 393, 462, 1004, 1076, 1453
SchI GAGTC 2 cut(s) 129, 1121
SduI GDGCHC 3 cut(s) 23, 1288, 1356
SfaNI GCATC 3 cut(s) 574, 1515, 1581
SfcI CTRYAG 1 cut(s) 1289
SfiI GGCCNNNNNGGCC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 7 cut(s) 428, 643, 771, 957, 977, 1307, 1315
SsiI CCGC 3 cut(s) 53, 803, 1243
SspI AATATT 1 cut(s) 60
SspMI CTAG 5 cut(s) 600, 968, 1031, 1223, 1693
SstI GAGCTC 1 cut(s) 1356
StyI CCWWGG 3 cut(s) 388, 396, 1438
TaaI ACNGT 3 cut(s) 128, 367, 1475
TaiI ACGT 1 cut(s) 323
TaqI TCGA 4 cut(s) 339, 490, 684, 1547
TasI AATT 7 cut(s) 428, 643, 771, 957, 977, 1307, 1315
TfiI GAWTC 7 cut(s) 222, 571, 822, 838, 872, 889, 973
TscAI CASTG 3 cut(s) 384, 812, 1423
TseFI GTSAC 2 cut(s) 1321, 1469
TseI GCWGC 7 cut(s) 281, 352, 439, 950, 1291, 1388, 1585
Tsp45I GTSAC 2 cut(s) 1321, 1469
TspDTI ATGAA 3 cut(s) 791, 1382, 1489
TspRI CASTG 3 cut(s) 384, 812, 1423
XapI RAATTY 3 cut(s) 428, 1307, 1315
XceI RCATGY 2 cut(s) 818, 1669
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 5 cut(s) 600, 968, 1031, 1223, 1693
Zsp2I ATGCAT 2 cut(s) 940, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.