Rmu_sc0006709.1_g000010

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006709.1
OG0012228
Physical Location & Seq
Reverse (-)
42529 .. 43254
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006709.1_g000010.1.cds

Sequence Viewer

Length: 726 bp
atggcgaaatcaagaacgagccccaagacaacatcacgaaacccatcaccatcaccaccgccaatattcctcttccactacttgctcccagtctctgcactcaccaccctcctcttctcccccaaaacgcaccgtttcagactccccaaaccctcctcctcctcctcatcatcatctccctcaatcctccttctctgtttcctcttctccctcactttcttgggaatctcaatcctcaatctcatccccacctactctgccatcatcccctgttcccactctgctgcctccactccttccctctcccccatttccccgaaaacctcttcttcgggctttatcgacgacccgaggctgctttcggatactgtcatggtgccactgccggcccatggggccttgggggctaatctttcctcggaggagaaggaattctgggagcagcccaatggggaagggtttaggccctgcttggatttcggcctcgggtatcgacaatcgtctgccaagattgtgaaagagaggaggaggttcttgctggtggtggcctctgggggtctgaaccagcagaggaatcagattgtggatgctgttgtcattgctagggttcttgaggctgttttggttgtgcctgttttgcaggtcaatttgatctggggagacgaaaggtttgacattttttccgctcttgaatttggtgatttctgcatttttgtattgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

241

Amino Acids

26.31

Weight (kDa)

9.0

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63390
fragaria_vesca FvH4_5g07850
malus_domestica MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica Prupe.5G153800_v2.0.a1
pyrus_communis pycom06g13480
rosa_chinensis RchiOBHm_Chr7g0190611
rosa_laevigata RLG00000004510
rosa_multiflora Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii Rroxscaffold_3G00264460
rosa_rugosa Rorug06G0505600 Rorug06G0505700
rosa_samantha Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana Rw7G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 686
AciI CCGC 2 cut(s) 59, 684
AcsI RAATTY 2 cut(s) 431, 692
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 2 cut(s) 692, 721
Alw26I GTCTC 2 cut(s) 97, 654
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 2 cut(s) 349, 485
AoxI GGCC 5 cut(s) 387, 396, 464, 481, 546
ApeKI GCWGC 3 cut(s) 284, 355, 442
ApoI RAATTY 2 cut(s) 431, 692
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp700I GAANNNNTTC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 388, 396, 465
AsuHPI GGTGA 4 cut(s) 39, 45, 94, 710
AvaI CYCGRG 2 cut(s) 349, 485
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 271, 342, 454
BccI CCATC 3 cut(s) 52, 58, 269
BciVI GTATCC 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 97, 654
BfaI CTAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 1 cut(s) 358
BglI GCCNNNNNGGC 2 cut(s) 395, 404
BisI GCNGC 3 cut(s) 285, 356, 443
BlsI GCNGC 3 cut(s) 286, 357, 444
BmeT110I CYCGRG 2 cut(s) 349, 485
BmgT120I GGNCC 3 cut(s) 388, 396, 465
BmiI GGNNCC 2 cut(s) 378, 397
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 83
BoxI GACNNNNGTC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 632
BsaJI CCNNGG 5 cut(s) 350, 391, 399, 417, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 597
BseDI CCNNGG 5 cut(s) 350, 391, 399, 417, 484
BseGI GGATG 3 cut(s) 243, 264, 592
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMI GCAATG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 8 cut(s) 101, 145, 148, 151, 154, 437, 538, 541
BseXI GCAGC 3 cut(s) 271, 342, 454
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 5 cut(s) 389, 398, 466, 483, 548
BshNI GGYRCC 1 cut(s) 376
BsiHKCI CYCGRG 2 cut(s) 349, 485
BsiSI CCGG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 2 cut(s) 97, 654
BsmBI CGTCTC 1 cut(s) 654
BsnI GGCC 5 cut(s) 389, 398, 466, 483, 548
BsoBI CYCGRG 2 cut(s) 349, 485
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 651
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 2 cut(s) 59, 684
BspANI GGCC 5 cut(s) 389, 398, 466, 483, 548
BspLI GGNNCC 2 cut(s) 378, 397
BspMI ACCTGC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 5 cut(s) 350, 391, 399, 417, 484
BssMI GATC 1 cut(s) 651
BssT1I CCWWGG 2 cut(s) 391, 399
Bst4CI ACNGT 2 cut(s) 134, 370
Bst6I CTCTTC 4 cut(s) 77, 119, 209, 331
BstC8I GCNNGC 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 243, 264, 592
BstKTI GATC 1 cut(s) 654
BstMAI GTCTC 2 cut(s) 97, 654
BstMBI GATC 1 cut(s) 651
BstMWI GCNNNNNNNGC 3 cut(s) 395, 404, 637
BstPAI GACNNNNGTC 1 cut(s) 499
BstV1I GCAGC 3 cut(s) 271, 342, 454
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 5 cut(s) 389, 398, 466, 483, 548
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 3 cut(s) 243, 264, 592
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 3 cut(s) 388, 396, 465
CviAII CATG 2 cut(s) 373, 392
DpnI GATC 1 cut(s) 653
DpnII GATC 1 cut(s) 651
Eam1104I CTCTTC 4 cut(s) 77, 119, 209, 331
EarI CTCTTC 4 cut(s) 77, 119, 209, 331
Eco130I CCWWGG 2 cut(s) 391, 399
Eco24I GRGCYC 1 cut(s) 23
Eco88I CYCGRG 2 cut(s) 349, 485
EcoO109I RGGNCCY 2 cut(s) 396, 465
EcoRI GAATTC 1 cut(s) 431
EcoT14I CCWWGG 2 cut(s) 391, 399
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 2 cut(s) 391, 399
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 2 cut(s) 376, 395
FaiI YATR 2 cut(s) 374, 393
FatI CATG 2 cut(s) 372, 391
Fnu4HI GCNGC 3 cut(s) 285, 356, 443
FokI GGATG 3 cut(s) 230, 251, 599
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 285, 356, 443
FspBI CTAG 1 cut(s) 603
GluI GCNGC 3 cut(s) 285, 356, 443
HaeIII GGCC 5 cut(s) 389, 398, 466, 483, 548
HapII CCGG 1 cut(s) 386
Hin1II CATG 2 cut(s) 376, 395
HinfI GANTC 3 cut(s) 141, 225, 574
HpaII CCGG 1 cut(s) 386
HphI GGTGA 4 cut(s) 39, 45, 94, 710
Hpy188I TCNGA 5 cut(s) 140, 364, 421, 561, 579
Hpy188III TCNNGA 4 cut(s) 12, 36, 611, 689
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 200, 306, 421, 449
HpyCH4III ACNGT 2 cut(s) 134, 370
HpyCH4V TGCA 3 cut(s) 98, 640, 708
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 404, 637
Hsp92II CATG 2 cut(s) 376, 395
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 651
LmnI GCTCC 2 cut(s) 90, 439
Lsp1109I GCAGC 3 cut(s) 271, 342, 454
LweI GCATC 1 cut(s) 577
MaeI CTAG 1 cut(s) 603
MalI GATC 1 cut(s) 653
MbiI CCGCTC 1 cut(s) 686
MboI GATC 1 cut(s) 651
MboII GAAGA 5 cut(s) 64, 106, 196, 318, 321
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 4 cut(s) 431, 646, 692, 721
MlyI GAGTC 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 431
MspI CCGG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 395, 404, 637
NaeI GCCGGC 1 cut(s) 387
NcoI CCATGG 1 cut(s) 391
NdeII GATC 1 cut(s) 651
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 2 cut(s) 376, 395
NlaIV GGNNCC 2 cut(s) 378, 397
PdiI GCCGGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 225, 574
PkrI GCNGC 3 cut(s) 286, 357, 444
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 378, 397
PspPI GGNCC 3 cut(s) 388, 396, 465
PstNI CAGNNNCTG 1 cut(s) 95
SatI GCNGC 3 cut(s) 285, 356, 443
Sau3AI GATC 1 cut(s) 651
Sau96I GGNCC 3 cut(s) 388, 396, 465
SchI GAGTC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 23
SetI ASST 5 cut(s) 254, 326, 533, 645, 671
SfaNI GCATC 1 cut(s) 577
SfiI GGCCNNNNNGGCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 4 cut(s) 431, 646, 692, 721
SsiI CCGC 2 cut(s) 59, 684
SspI AATATT 1 cut(s) 66
SspMI CTAG 1 cut(s) 603
StyI CCWWGG 2 cut(s) 391, 399
TaaI ACNGT 2 cut(s) 134, 370
TaqI TCGA 2 cut(s) 342, 493
TasI AATT 4 cut(s) 431, 646, 692, 721
TfiI GAWTC 2 cut(s) 225, 574
TscAI CASTG 1 cut(s) 387
TseI GCWGC 3 cut(s) 284, 355, 442
TspRI CASTG 1 cut(s) 387
XapI RAATTY 2 cut(s) 431, 692
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.