Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023847.1

Orthogroup ID

OG0012228

Physical Location & Seq

Genomic Coordinates Forward (+)

15742 .. 16470

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023847.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcgaaatcaagaacgagccccaagacaacatcacgaaacccatcaccatcaccaccgccaatattcctcttccactacttgctcccagtctctgcactcaccaccctcctcttctcccccaaaacgcaccgtttcagactccccaaaccctcctcctcctcctcatcatcatcatctccctcaatcctccttctctgtttcctcttctccctcactttcttgggaatctcaatcctcaatctcatccccacctactctgccatcatcccctgttcccactctgctgcctccactccttccctctcccccatttccccgaaaacctcttcttcgggctttatcgacgacccgaggctgctttcggatactgtcatggtgccactgccggcccatggggccttgggggctaatctttcctcggaggagaaggaattctgggagcagcccaatggggaagggtttaggccctgcttggatttcggcctcgggtatcgacaatcgtctgccaagattgtgaaagagaggaggaggttcttgctggtggtggcctctgggggtctgaaccagcagaggaatcagattgtggatgctgttgtcattgctagggttcttgaggctgttttggttgtgcctgttttgcaggtcaatttgatctggggagacgaaaggtttgacatttttttcgctcttgaatttggtgatttctgcatttttgtatcgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

242

Amino Acids

26.43

Weight (kDa)

9.0

Isoelectric Point (pI)

57.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63390
fragaria_vesca	FvH4_5g07850
malus_domestica	MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica	Prupe.5G153800_v2.0.a1
pyrus_communis	pycom06g13480
rosa_chinensis	RchiOBHm_Chr7g0190611
rosa_laevigata	RLG00000004510
rosa_multiflora	Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264460
rosa_rugosa	Rorug06G0505600 Rorug06G0505700
rosa_samantha	Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana	Rw7G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	434, 695
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	695
Alw26I	GTCTC	2 cut(s)	97, 657
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	2 cut(s)	352, 488
AoxI	GGCC	5 cut(s)	390, 399, 467, 484, 549
ApeKI	GCWGC	3 cut(s)	287, 358, 445
ApoI	RAATTY	2 cut(s)	434, 695
ArsI	GACNNNNNNTTYG	4 cut(s)	656, 668, 688, 700
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	3 cut(s)	391, 399, 468
AsuHPI	GGTGA	4 cut(s)	39, 45, 94, 713
AvaI	CYCGRG	2 cut(s)	352, 488
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	274, 345, 457
BccI	CCATC	3 cut(s)	52, 58, 272
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	97, 657
BfaI	CTAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	361
BglI	GCCNNNNNGGC	2 cut(s)	398, 407
BisI	GCNGC	3 cut(s)	288, 359, 446
BlsI	GCNGC	3 cut(s)	289, 360, 447
BmeT110I	CYCGRG	2 cut(s)	352, 488
BmgT120I	GGNCC	3 cut(s)	391, 399, 468
BmiI	GGNNCC	2 cut(s)	381, 400
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	83
BoxI	GACNNNNGTC	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	635
BsaJI	CCNNGG	5 cut(s)	353, 394, 402, 420, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	600
BseDI	CCNNGG	5 cut(s)	353, 394, 402, 420, 487
BseGI	GGATG	3 cut(s)	246, 267, 595
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	8 cut(s)	101, 145, 148, 151, 154, 440, 541, 544
BseXI	GCAGC	3 cut(s)	274, 345, 457
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	5 cut(s)	392, 401, 469, 486, 551
BshNI	GGYRCC	1 cut(s)	379
BsiHKCI	CYCGRG	2 cut(s)	352, 488
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	97, 657
BsmBI	CGTCTC	1 cut(s)	657
BsnI	GGCC	5 cut(s)	392, 401, 469, 486, 551
BsoBI	CYCGRG	2 cut(s)	352, 488
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	654
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	5 cut(s)	392, 401, 469, 486, 551
BspLI	GGNNCC	2 cut(s)	381, 400
BspMI	ACCTGC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	5 cut(s)	353, 394, 402, 420, 487
BssMI	GATC	1 cut(s)	654
BssT1I	CCWWGG	2 cut(s)	394, 402
Bst4CI	ACNGT	2 cut(s)	134, 373
Bst6I	CTCTTC	4 cut(s)	77, 119, 212, 334
BstC8I	GCNNGC	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	246, 267, 595
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	2 cut(s)	97, 657
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 407, 640
BstPAI	GACNNNNGTC	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	274, 345, 457
BsuI	GTATCC	1 cut(s)	361
BsuRI	GGCC	5 cut(s)	392, 401, 469, 486, 551
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	246, 267, 595
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	391, 399, 468
CviAII	CATG	2 cut(s)	376, 395
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
Eam1104I	CTCTTC	4 cut(s)	77, 119, 212, 334
EarI	CTCTTC	4 cut(s)	77, 119, 212, 334
Eco130I	CCWWGG	2 cut(s)	394, 402
Eco24I	GRGCYC	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	352, 488
EcoO109I	RGGNCCY	2 cut(s)	399, 468
EcoRI	GAATTC	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	394, 402
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	394, 402
Esp3I	CGTCTC	1 cut(s)	657
FaeI	CATG	2 cut(s)	379, 398
FaiI	YATR	2 cut(s)	377, 396
FatI	CATG	2 cut(s)	375, 394
Fnu4HI	GCNGC	3 cut(s)	288, 359, 446
FokI	GGATG	3 cut(s)	233, 254, 602
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	288, 359, 446
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	3 cut(s)	288, 359, 446
HaeIII	GGCC	5 cut(s)	392, 401, 469, 486, 551
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	2 cut(s)	379, 398
HinfI	GANTC	3 cut(s)	141, 228, 577
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	4 cut(s)	39, 45, 94, 713
Hpy188I	TCNGA	5 cut(s)	140, 367, 424, 564, 582
Hpy188III	TCNNGA	4 cut(s)	12, 36, 614, 692
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	203, 309, 424, 452
HpyCH4III	ACNGT	2 cut(s)	134, 373
HpyCH4V	TGCA	3 cut(s)	98, 643, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 407, 640
Hsp92II	CATG	2 cut(s)	379, 398
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	2 cut(s)	90, 442
Lsp1109I	GCAGC	3 cut(s)	274, 345, 457
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	606
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	5 cut(s)	64, 106, 199, 321, 324
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	434, 649, 695, 724
MlyI	GAGTC	1 cut(s)	135
MroNI	GCCGGC	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	434
MspI	CCGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	398, 407, 640
NaeI	GCCGGC	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	654
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	379, 398
NlaIV	GGNNCC	2 cut(s)	381, 400
PdiI	GCCGGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	228, 577
PkrI	GCNGC	3 cut(s)	289, 360, 447
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PshAI	GACNNNNGTC	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	381, 400
PspPI	GGNCC	3 cut(s)	391, 399, 468
PstNI	CAGNNNCTG	1 cut(s)	95
SatI	GCNGC	3 cut(s)	288, 359, 446
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	3 cut(s)	391, 399, 468
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	5 cut(s)	257, 329, 536, 648, 674
SfaNI	GCATC	1 cut(s)	580
SfiI	GGCCNNNNNGGCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	4 cut(s)	434, 649, 695, 724
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	66
SspMI	CTAG	1 cut(s)	606
StyI	CCWWGG	2 cut(s)	394, 402
TaaI	ACNGT	2 cut(s)	134, 373
TaqI	TCGA	3 cut(s)	345, 496, 722
TasI	AATT	4 cut(s)	434, 649, 695, 724
TfiI	GAWTC	2 cut(s)	228, 577
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	3 cut(s)	287, 358, 445
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	434, 695
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.