Rh7AG112300

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012228
Physical Location & Seq
Forward (+)
8784783 .. 8787775
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG112300.1

Sequence Viewer

Length: 1605 bp
ATGAAATTCGCCTTCCACAACAAGCTTCGCTTTATTTTCTCCAAGAATCCAAACCCCTCAACATTTCCAGAACCCAAATTCCAGAGACGAAGAAGAAGACGAACCAGAACGGCCATTGATTCACTTCAAGCCTTTTCTCCCATGGCGAAACCAAGAACGAGCCCCAAGACAACATCACCACCGCCATTCCTCTTCCAATACTTGCTCCCAGTCTCTCCACTCACCACCCTCCTCTTCTCCCCCAAAACGCACCGTTTCAGACTCCCCAAACCCTCCTCCTCCTCATCATCATCATCATCTCCCTCAATCCTCCTTCTCTGTTTCCTCTTCTCCCTCACTTTCTTGGGAATCTCAATCCTCAACCTCATCCCCACCCACTCTGCCATCATCCCCTGTTCCCACTCTGCTGCCTCCACTCCTTCCCTCTCCCCCATTTCCCCGAAAACCTCTTCTTCGGGCTTTATCGACGACCCGAGGCTGCTTTCGGATAGTGTCATGGTGCCACTGCCGGCCCATGGGGCCTTGGGGGCTAATCTTTCCTCGGAGGAGAAGGAATTCTGGGAGCAGCCCAATGGGGAAGGGTTTAGGCCCTGCTTGGATTTCGGCCTCGGGTATCGAAAATCGTCTGCCAAGATTGTCAAGGAGAGGAGGAGGTTCTTGCTGGTGGTGGCCTCTGGGGGTCTGAACCAGCAGAGGAATCAGATTGTGGATGCTGTTGTCATTGCTAGGGTTCTTGAGGCTGTTTTGGTTGTGCCTGTTTTGCAGGTCAATTTGATCTGGGGAGACGAAAGTGAGTTTTCAGATATTTTCGATGTGGCACACTTCAAGAAGACTTTACAATCTGATGTACGAGTTGTATCAAATCTTCCCTCTACACATTTGATGTCAAGACAGAAAATTATGAACAAGATCCCTCACGATGTTACTCCGCAGTGGATACATGCCAGATTCTATAATCAACTGAATCGAGATGGCCTTCTTGTGCTAAAAGGGCTGGATTCTAAGCTCTCAAAGAATCTCCCCCCTGATCTTCAGAAGCTTCGGTGTAAGGTTGCTTTCCATGCATTGAGATTTGCAGCACCAATTCAAGCACTAGGGAATCAATTAGCAAAGAGAATGTGGATTGAAGGGCCTTACATTGCACTCCATCTCCGGCTAGAGAAGGATGTCTGGGTCAGAACAGGATGTCTCACCGGATTAGGCCCTGAATATGATGACATTATCACAAAGGTTCGGGAGTCTCAACCCGAATATCTTACAGGACGATTGAACATGACCTACAACCAAAGGAGACTTGCTGGTCTCTGTCCCCTAAATGCATTAGAAATAGCAAGGCTTCTGAAGGGTCTAGGAGCGCCAAGAAGTGCGCGGATATATAGTGCAGGAGGTGAGGCATTTGGGGAAAGCAGGGCTCTGCAGCCACTTGTGGCAGAATTTCCAAATTTGGTGACAAAGGAGATGTTGGCGAAAGAAGGAGAGCTCTCTCTATACATGAACAAGCCTTCAGCTCTGGCTGCCATTGACTACCTTGTCTCTCTAAGCAGTGATGTCTTTGTGCCTTCCCATGGTGGAAACATGGGCCGAGCAATGCAGGCAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

534

Amino Acids

59.31

Weight (kDa)

9.95

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 219 - 531 1.6e-83 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63390
fragaria_vesca FvH4_5g07850
malus_domestica MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica Prupe.5G153800_v2.0.a1
pyrus_communis pycom06g13480
rosa_chinensis RchiOBHm_Chr7g0190611
rosa_laevigata RLG00000004510
rosa_multiflora Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii Rroxscaffold_3G00264460
rosa_rugosa Rorug06G0505600 Rorug06G0505700
rosa_samantha Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana Rw7G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1299, 1529
Acc36I ACCTGC 1 cut(s) 754
AccB1I GGYRCC 1 cut(s) 499
AccII CGCG 1 cut(s) 1369
AciI CCGC 3 cut(s) 182, 929, 1369
AclWI GGATC 1 cut(s) 904
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 5 cut(s) 5, 77, 554, 1433, 1441
AcuI CTGAAG 3 cut(s) 1016, 1361, 1488
AfaI GTAC 1 cut(s) 849
AfiI CCNNNNNNNGG 2 cut(s) 515, 1565
AgsI TTSAA 5 cut(s) 128, 826, 1088, 1127, 1270
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 5 cut(s) 25, 1006, 1039, 1480, 1508
AluI AGCT 5 cut(s) 25, 1006, 1039, 1480, 1508
Alw21I GWGCWC 1 cut(s) 1482
Alw26I GTCTC 8 cut(s) 79, 217, 777, 1193, 1245, 1285, 1307, 1537
AlwI GGATC 1 cut(s) 904
Ama87I CYCGRG 2 cut(s) 472, 608
ApeKI GCWGC 6 cut(s) 407, 478, 565, 1076, 1417, 1514
ApoI RAATTY 5 cut(s) 5, 77, 554, 1433, 1441
Asp700I GAANNNNTTC 1 cut(s) 554
AspLEI GCGC 2 cut(s) 1357, 1369
AspS9I GGNCC 6 cut(s) 511, 519, 588, 1130, 1202, 1579
AsuHPI GGTGA 5 cut(s) 168, 214, 1183, 1400, 1459
AvaI CYCGRG 2 cut(s) 472, 608
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 3 cut(s) 164, 1414, 1482
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BbsI GAAGAC 2 cut(s) 103, 836
Bbv12I GWGCWC 1 cut(s) 1482
BbvI GCAGC 6 cut(s) 394, 465, 577, 1088, 1429, 1501
BccI CCATC 3 cut(s) 392, 965, 1155
BceAI ACGGC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 930
BcoDI GTCTC 8 cut(s) 79, 217, 777, 1193, 1245, 1285, 1307, 1537
BfaI CTAG 4 cut(s) 726, 1094, 1157, 1349
BfmI CTRYAG 1 cut(s) 1415
BfoI RGCGCY 1 cut(s) 1358
BfuAI ACCTGC 1 cut(s) 754
BfuI GTATCC 1 cut(s) 930
BglI GCCNNNNNGGC 2 cut(s) 518, 527
BisI GCNGC 6 cut(s) 408, 479, 566, 1077, 1418, 1515
BlsI GCNGC 6 cut(s) 409, 480, 567, 1078, 1419, 1516
BmeT110I CYCGRG 2 cut(s) 472, 608
BmgT120I GGNCC 6 cut(s) 511, 519, 588, 1130, 1202, 1579
BmiI GGNNCC 2 cut(s) 501, 520
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 103, 836
BpuEI CTTGAG 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 1307
BsaJI CCNNGG 7 cut(s) 141, 473, 514, 522, 540, 607, 1564
BsaWI WCCGGW 1 cut(s) 1193
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 1565
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 3 cut(s) 720, 1137, 1593
BseDI CCNNGG 7 cut(s) 141, 473, 514, 522, 540, 607, 1564
BseGI GGATG 5 cut(s) 366, 387, 715, 1171, 1190
BseLI CCNNNNNNNGG 2 cut(s) 515, 1565
BseMI GCAATG 3 cut(s) 720, 1137, 1593
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 7 cut(s) 221, 265, 268, 271, 560, 661, 664
BseXI GCAGC 6 cut(s) 394, 465, 577, 1088, 1429, 1501
BsgI GTGCAG 1 cut(s) 1401
Bsh1236I CGCG 1 cut(s) 1369
BshNI GGYRCC 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 1482
BsiHKCI CYCGRG 2 cut(s) 472, 608
BsiSI CCGG 3 cut(s) 509, 1153, 1194
BslFI GGGAC 1 cut(s) 1293
BslI CCNNNNNNNGG 2 cut(s) 515, 1565
BsmAI GTCTC 8 cut(s) 79, 217, 777, 1193, 1245, 1285, 1307, 1537
BsmBI CGTCTC 2 cut(s) 79, 777
BsmFI GGGAC 1 cut(s) 1293
Bso31I GGTCTC 1 cut(s) 1307
BsoBI CYCGRG 2 cut(s) 472, 608
Bsp1286I GDGCHC 3 cut(s) 164, 1414, 1482
Bsp143I GATC 3 cut(s) 774, 909, 1027
Bsp19I CCATGG 3 cut(s) 141, 514, 1564
BspACI CCGC 3 cut(s) 182, 929, 1369
BspFNI CGCG 1 cut(s) 1369
BspLI GGNNCC 2 cut(s) 501, 520
BspMAI CTGCAG 1 cut(s) 1419
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 1 cut(s) 904
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 1307
BsrDI GCAATG 3 cut(s) 720, 1137, 1593
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 7 cut(s) 141, 473, 514, 522, 540, 607, 1564
BssMI GATC 3 cut(s) 774, 909, 1027
BssT1I CCWWGG 4 cut(s) 141, 514, 522, 1564
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 4 cut(s) 197, 239, 332, 454
BstC8I GCNNGC 3 cut(s) 510, 1593, 1597
BstDEI CTNAG 2 cut(s) 1002, 1538
BstDSI CCRYGG 3 cut(s) 141, 514, 1564
BstF5I GGATG 5 cut(s) 366, 387, 715, 1171, 1190
BstFNI CGCG 1 cut(s) 1369
BstH2I RGCGCY 1 cut(s) 1358
BstHHI GCGC 2 cut(s) 1357, 1369
BstKTI GATC 3 cut(s) 777, 912, 1030
BstMAI GTCTC 8 cut(s) 79, 217, 777, 1193, 1245, 1285, 1307, 1537
BstMBI GATC 3 cut(s) 774, 909, 1027
BstMWI GCNNNNNNNGC 7 cut(s) 518, 527, 760, 991, 1061, 1514, 1592
BstNSI RCATGY 1 cut(s) 944
BstSFI CTRYAG 1 cut(s) 1415
BstUI CGCG 1 cut(s) 1369
BstV1I GCAGC 6 cut(s) 394, 465, 577, 1088, 1429, 1501
BstV2I GAAGAC 2 cut(s) 103, 836
BstX2I RGATCY 1 cut(s) 909
BstYI RGATCY 1 cut(s) 909
BsuI GTATCC 1 cut(s) 930
BtgI CCRYGG 3 cut(s) 141, 514, 1564
BtsCI GGATG 5 cut(s) 366, 387, 715, 1171, 1190
BtsI GCAGTG 3 cut(s) 503, 938, 1549
BtsIMutI CAGTG 3 cut(s) 503, 938, 1549
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 3 cut(s) 510, 1593, 1597
CfoI GCGC 2 cut(s) 1357, 1369
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 6 cut(s) 511, 519, 588, 1130, 1202, 1579
Csp6I GTAC 1 cut(s) 848
CviAII CATG 9 cut(s) 142, 496, 515, 941, 1061, 1273, 1492, 1565, 1576
CviQI GTAC 1 cut(s) 848
DdeI CTNAG 2 cut(s) 1002, 1538
DpnI GATC 3 cut(s) 776, 911, 1029
DpnII GATC 3 cut(s) 774, 909, 1027
DrdI GACNNNNNNGTC 2 cut(s) 1299, 1529
DseDI GACNNNNNNGTC 2 cut(s) 1299, 1529
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 4 cut(s) 197, 239, 332, 454
EarI CTCTTC 4 cut(s) 197, 239, 332, 454
Ecl136II GAGCTC 1 cut(s) 1480
Eco130I CCWWGG 4 cut(s) 141, 514, 522, 1564
Eco24I GRGCYC 3 cut(s) 164, 1414, 1482
Eco31I GGTCTC 1 cut(s) 1307
Eco53kI GAGCTC 1 cut(s) 1480
Eco57I CTGAAG 3 cut(s) 1016, 1361, 1488
Eco88I CYCGRG 2 cut(s) 472, 608
EcoICRI GAGCTC 1 cut(s) 1480
EcoO109I RGGNCCY 4 cut(s) 519, 588, 1130, 1202
EcoRI GAATTC 1 cut(s) 554
EcoT14I CCWWGG 4 cut(s) 141, 514, 522, 1564
EcoT22I ATGCAT 2 cut(s) 1066, 1321
EcoT38I GRGCYC 3 cut(s) 164, 1414, 1482
ErhI CCWWGG 4 cut(s) 141, 514, 522, 1564
Esp3I CGTCTC 2 cut(s) 79, 777
FaeI CATG 9 cut(s) 145, 499, 518, 944, 1064, 1276, 1495, 1568, 1579
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 1293
FatI CATG 9 cut(s) 141, 495, 514, 940, 1060, 1272, 1491, 1564, 1575
Fnu4HI GCNGC 6 cut(s) 408, 479, 566, 1077, 1418, 1515
FokI GGATG 5 cut(s) 353, 374, 722, 1178, 1197
FriOI GRGCYC 3 cut(s) 164, 1414, 1482
Fsp4HI GCNGC 6 cut(s) 408, 479, 566, 1077, 1418, 1515
FspBI CTAG 4 cut(s) 726, 1094, 1157, 1349
GlaI GCGC 2 cut(s) 1356, 1368
GluI GCNGC 6 cut(s) 408, 479, 566, 1077, 1418, 1515
HaeII RGCGCY 1 cut(s) 1358
HapII CCGG 3 cut(s) 509, 1153, 1194
HhaI GCGC 2 cut(s) 1357, 1369
Hin1II CATG 9 cut(s) 145, 499, 518, 944, 1064, 1276, 1495, 1568, 1579
Hin6I GCGC 2 cut(s) 1355, 1367
HinP1I GCGC 2 cut(s) 1355, 1367
HindIII AAGCTT 2 cut(s) 23, 1037
HpaII CCGG 3 cut(s) 509, 1153, 1194
HphI GGTGA 5 cut(s) 168, 214, 1183, 1400, 1459
Hpy188III TCNNGA 8 cut(s) 68, 82, 734, 826, 888, 917, 968, 1235
Hpy99I CGWCG 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 8 cut(s) 763, 1064, 1076, 1142, 1319, 1382, 1417, 1591
HpyF10VI GCNNNNNNNGC 7 cut(s) 518, 527, 760, 991, 1061, 1514, 1592
HpyF3I CTNAG 2 cut(s) 1002, 1538
Hsp92II CATG 9 cut(s) 145, 499, 518, 944, 1064, 1276, 1495, 1568, 1579
HspAI GCGC 2 cut(s) 1355, 1367
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Kzo9I GATC 3 cut(s) 774, 909, 1027
LmnI GCTCC 3 cut(s) 210, 562, 1352
Lsp1109I GCAGC 6 cut(s) 394, 465, 577, 1088, 1429, 1501
LweI GCATC 1 cut(s) 700
MaeI CTAG 4 cut(s) 726, 1094, 1157, 1349
MaeIII GTNAC 2 cut(s) 922, 1447
MalI GATC 3 cut(s) 776, 911, 1029
MboI GATC 3 cut(s) 774, 909, 1027
MflI RGATCY 1 cut(s) 909
MhlI GDGCHC 3 cut(s) 164, 1414, 1482
MluCI AATT 9 cut(s) 5, 77, 554, 769, 897, 1083, 1103, 1433, 1441
MlyI GAGTC 2 cut(s) 255, 1247
Mph1103I ATGCAT 2 cut(s) 1066, 1321
MroNI GCCGGC 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 554
MspI CCGG 3 cut(s) 509, 1153, 1194
MvnI CGCG 1 cut(s) 1369
MwoI GCNNNNNNNGC 7 cut(s) 518, 527, 760, 991, 1061, 1514, 1592
NaeI GCCGGC 1 cut(s) 510
NcoI CCATGG 3 cut(s) 141, 514, 1564
NdeII GATC 3 cut(s) 774, 909, 1027
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 9 cut(s) 145, 499, 518, 944, 1064, 1276, 1495, 1568, 1579
NlaIV GGNNCC 2 cut(s) 501, 520
NmuCI GTSAC 1 cut(s) 1447
NsiI ATGCAT 2 cut(s) 1066, 1321
NspI RCATGY 1 cut(s) 944
PdiI GCCGGC 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 9 cut(s) 46, 119, 348, 697, 948, 964, 998, 1015, 1099
PkrI GCNGC 6 cut(s) 409, 480, 567, 1078, 1419, 1516
PleI GAGTC 2 cut(s) 255, 1246
PpsI GAGTC 2 cut(s) 255, 1246
Psp124BI GAGCTC 1 cut(s) 1482
PspN4I GGNNCC 2 cut(s) 501, 520
PspPI GGNCC 6 cut(s) 511, 519, 588, 1130, 1202, 1579
PsrI GAACNNNNNNTAC 2 cut(s) 1262, 1294
PstI CTGCAG 1 cut(s) 1419
PsuI RGATCY 1 cut(s) 909
RsaI GTAC 1 cut(s) 849
RsaNI GTAC 1 cut(s) 848
SacI GAGCTC 1 cut(s) 1482
SatI GCNGC 6 cut(s) 408, 479, 566, 1077, 1418, 1515
Sau3AI GATC 3 cut(s) 774, 909, 1027
Sau96I GGNCC 6 cut(s) 511, 519, 588, 1130, 1202, 1579
SchI GAGTC 2 cut(s) 255, 1247
SduI GDGCHC 3 cut(s) 164, 1414, 1482
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 1 cut(s) 1415
SfiI GGCCNNNNNGGCC 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 9 cut(s) 5, 77, 554, 769, 897, 1083, 1103, 1433, 1441
SsiI CCGC 3 cut(s) 182, 929, 1369
SspMI CTAG 4 cut(s) 726, 1094, 1157, 1349
SstI GAGCTC 1 cut(s) 1482
StyI CCWWGG 4 cut(s) 141, 514, 522, 1564
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 465, 616, 810, 967
TasI AATT 9 cut(s) 5, 77, 554, 769, 897, 1083, 1103, 1433, 1441
TfiI GAWTC 9 cut(s) 46, 119, 348, 697, 948, 964, 998, 1015, 1099
TscAI CASTG 3 cut(s) 510, 938, 1549
TseFI GTSAC 1 cut(s) 1447
TseI GCWGC 6 cut(s) 407, 478, 565, 1076, 1417, 1514
Tsp45I GTSAC 1 cut(s) 1447
TspDTI ATGAA 3 cut(s) 17, 917, 1508
TspRI CASTG 3 cut(s) 510, 938, 1549
XapI RAATTY 5 cut(s) 5, 77, 554, 1433, 1441
XceI RCATGY 1 cut(s) 944
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 4 cut(s) 726, 1094, 1157, 1349
Zsp2I ATGCAT 2 cut(s) 1066, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.