Rh7CG117200

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012228
Physical Location & Seq
Forward (+)
8991279 .. 8994267
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG117200.1

Sequence Viewer

Length: 1608 bp
ATGAAATTCGCCTTCCAGAACAAGCTTCGCTTTATTTTCTCCAAGAGTCCAAACCCCTCAACATTTCCAGAACCCAAATTCCAGAGACGAAGAAGAAGACGAACCAGAACCGCCATTGATTCACTTCAAGCCTTTTCTCCCATGGCGAAATCAAGAACGAGCCCCAAGACAACATCACCACCGCCAATATTCCTCTTCCACTACTTGCTCCCAGTCTCTGCACTCACCACCCTCCTCTTCTCCCCCAAAACGCACCGTTTCAGACTCCCCAAACCCTCCTCCTCCTCCTCATCATCATCATCTCCCTCAATCCTCCTTCTCTGTTTCCTCTTCTCCCTCACTTTCTTGGGAATCTCAATCCTCAATCTCATCCCCACCCACTCTGCCATCATCCCCTGTTCCCACTCTGCTGCCTCCACTCCTTCCCTCTCCCCCATTTCCCCGAAAACCACTTCTTCGGGCTTTATGGACGACCCAAGGCTGCTTTCGGATACTGTCATGGTGCCACTGCCGGCCCATGGGGCCTTGGGGGCTAATATTTCCTCGGAGGAGAAGGAATTCTGGGAGCAGCCCAATGGGGAAGGGTTTAGGCCCTGCTTGGATTTCGGCCTCGGGTATCGAAAATCGTCAGCCAAGATTGTGAAAGAGAGGAGGAGGTTCTTGCTGGTGGTGGCCTCTGGGGGTCTGAACCAGCAGAGGAATCAGATTGTGGATGCCGTTGTCATTGCTAGGGTTCTTGAGGCTGTTTTGGTTGTGCCTGTTTTGCAGGTCAATTTGATCTGGGGAGACGAAAGTGAGTTTTCAGATATTTTCGATGTGGCACACTTCAAGAAGACTTTACAATCTGATGTACGAGTTGTATCAAATCTTCCCTCTACACATTTGATGTCAAGACAGAAAATTATGAACAAGATCCCTCACGATGTTACTCCGCAGTGGATGCATGCCAGATTCTATAATCAACTGAATCGAGATGGCCTTCTTGTGCTAAAAGGGCTGGATTCTAAGCTCTCAAAGAATCTCCCCCCTGATCTTCAGAAGCTTCGGTGTAAGGTTGCTTTCCATGCATTGAGATTTGCAGCACCAATTCAAGCACTAGGGAATCAATTAGCAAAGAGAATGTGGATTGAAGGGCCTTACATTGCACTCCATCTCCGGCTAGAGAAGGATGTGTGGGTCAGAACAGGATGTCTCACCGGATTAGGCCCTGAATATGATGACATTATCACAAAGGTTCGGGAGTCTCAACCCGAATATCTTACAGGACGATTGAACATGACCTACAACCAAAGGAGACTTGCTGGTCTCTGTCCCCTAAATGCATTAGAAATAGCAAGGCTTCTGAAGGGTCTAGGAGCGCCAAGAAGTGCGCGGATATATAGTGCAGGAGGTGAGGCATTTGGGGAAAGCAGGGCTCTGCAGCCACTTGTGGCAGAATTTCCAAATTTGGTGACAAAGGAGATGTTGGCGAAAGAAGGAGAGCTCTCTCCATACATGAACAAGCCTTCAGCTCTGGCTGCCATTGACTACCTTGTCTCTCTAAGCAGTGATGTCTTTGTGCCTTCCCATGGTGGAAACATGGGCCGAGCAATGCAGGCAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

535

Amino Acids

59.41

Weight (kDa)

9.95

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 220 - 532 2.7e-84 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63390
fragaria_vesca FvH4_5g07850
malus_domestica MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica Prupe.5G153800_v2.0.a1
pyrus_communis pycom06g13480
rosa_chinensis RchiOBHm_Chr7g0190611
rosa_laevigata RLG00000004510
rosa_multiflora Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii Rroxscaffold_3G00264460
rosa_rugosa Rorug06G0505600 Rorug06G0505700
rosa_samantha Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana Rw7G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1302, 1532
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 502
AccII CGCG 1 cut(s) 1372
AciI CCGC 4 cut(s) 111, 182, 932, 1372
AclWI GGATC 1 cut(s) 907
AcsI RAATTY 5 cut(s) 5, 77, 557, 1436, 1444
AcuI CTGAAG 3 cut(s) 1019, 1364, 1491
AfaI GTAC 1 cut(s) 852
AfiI CCNNNNNNNGG 2 cut(s) 518, 1568
AgsI TTSAA 5 cut(s) 128, 829, 1091, 1130, 1273
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 5 cut(s) 25, 1009, 1042, 1483, 1511
AluI AGCT 5 cut(s) 25, 1009, 1042, 1483, 1511
Alw21I GWGCWC 1 cut(s) 1485
Alw26I GTCTC 8 cut(s) 79, 220, 780, 1196, 1248, 1288, 1310, 1540
AlwI GGATC 1 cut(s) 907
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 9 cut(s) 513, 522, 590, 607, 672, 976, 1133, 1204, 1582
ApeKI GCWGC 6 cut(s) 410, 481, 568, 1079, 1420, 1517
ApoI RAATTY 5 cut(s) 5, 77, 557, 1436, 1444
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 2 cut(s) 1360, 1372
AspS9I GGNCC 6 cut(s) 514, 522, 591, 1133, 1205, 1582
AsuHPI GGTGA 5 cut(s) 168, 217, 1186, 1403, 1462
AvaI CYCGRG 1 cut(s) 611
BanI GGYRCC 1 cut(s) 502
BanII GRGCYC 3 cut(s) 164, 1417, 1485
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbsI GAAGAC 2 cut(s) 103, 839
Bbv12I GWGCWC 1 cut(s) 1485
BbvI GCAGC 6 cut(s) 397, 468, 580, 1091, 1432, 1504
BccI CCATC 3 cut(s) 395, 968, 1158
BceAI ACGGC 1 cut(s) 701
BciVI GTATCC 1 cut(s) 484
BcoDI GTCTC 8 cut(s) 79, 220, 780, 1196, 1248, 1288, 1310, 1540
BfaI CTAG 4 cut(s) 729, 1097, 1160, 1352
BfmI CTRYAG 1 cut(s) 1418
BfoI RGCGCY 1 cut(s) 1361
BfuAI ACCTGC 1 cut(s) 757
BfuI GTATCC 1 cut(s) 484
BglI GCCNNNNNGGC 2 cut(s) 521, 530
BisI GCNGC 6 cut(s) 411, 482, 569, 1080, 1421, 1518
BlsI GCNGC 6 cut(s) 412, 483, 570, 1081, 1422, 1519
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 6 cut(s) 514, 522, 591, 1133, 1205, 1582
BmiI GGNNCC 2 cut(s) 504, 523
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 703, 930
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 103, 839
BpuEI CTTGAG 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 1310
BsaJI CCNNGG 7 cut(s) 141, 476, 517, 525, 543, 610, 1567
BsaWI WCCGGW 1 cut(s) 1196
BsaXI ACNNNNNCTCC 2 cut(s) 1137, 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 1568
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 3 cut(s) 723, 1140, 1596
BseDI CCNNGG 7 cut(s) 141, 476, 517, 525, 543, 610, 1567
BseGI GGATG 6 cut(s) 369, 390, 718, 945, 1174, 1193
BseLI CCNNNNNNNGG 2 cut(s) 518, 1568
BseMI GCAATG 3 cut(s) 723, 1140, 1596
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 8 cut(s) 224, 268, 271, 274, 277, 563, 664, 667
BseXI GCAGC 6 cut(s) 397, 468, 580, 1091, 1432, 1504
BsgI GTGCAG 2 cut(s) 204, 1404
Bsh1236I CGCG 1 cut(s) 1372
BshFI GGCC 9 cut(s) 515, 524, 592, 609, 674, 978, 1135, 1206, 1584
BshNI GGYRCC 1 cut(s) 502
BsiHKAI GWGCWC 1 cut(s) 1485
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 3 cut(s) 512, 1156, 1197
BslFI GGGAC 1 cut(s) 1296
BslI CCNNNNNNNGG 2 cut(s) 518, 1568
BsmAI GTCTC 8 cut(s) 79, 220, 780, 1196, 1248, 1288, 1310, 1540
BsmBI CGTCTC 2 cut(s) 79, 780
BsmFI GGGAC 1 cut(s) 1296
BsnI GGCC 9 cut(s) 515, 524, 592, 609, 674, 978, 1135, 1206, 1584
Bso31I GGTCTC 1 cut(s) 1310
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 3 cut(s) 164, 1417, 1485
Bsp143I GATC 3 cut(s) 777, 912, 1030
Bsp19I CCATGG 3 cut(s) 141, 517, 1567
BspACI CCGC 4 cut(s) 111, 182, 932, 1372
BspANI GGCC 9 cut(s) 515, 524, 592, 609, 674, 978, 1135, 1206, 1584
BspFNI CGCG 1 cut(s) 1372
BspLI GGNNCC 2 cut(s) 504, 523
BspMAI CTGCAG 1 cut(s) 1422
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 1 cut(s) 907
BspT107I GGYRCC 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 1310
BsrDI GCAATG 3 cut(s) 723, 1140, 1596
BsrFI RCCGGY 1 cut(s) 511
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 7 cut(s) 141, 476, 517, 525, 543, 610, 1567
BssMI GATC 3 cut(s) 777, 912, 1030
BssT1I CCWWGG 5 cut(s) 141, 476, 517, 525, 1567
Bst4CI ACNGT 2 cut(s) 257, 496
Bst6I CTCTTC 3 cut(s) 200, 242, 335
BstAPI GCANNNNNTGC 1 cut(s) 940
BstC8I GCNNGC 4 cut(s) 513, 945, 1596, 1600
BstDEI CTNAG 2 cut(s) 1005, 1541
BstDSI CCRYGG 3 cut(s) 141, 517, 1567
BstF5I GGATG 6 cut(s) 369, 390, 718, 945, 1174, 1193
BstFNI CGCG 1 cut(s) 1372
BstH2I RGCGCY 1 cut(s) 1361
BstHHI GCGC 2 cut(s) 1360, 1372
BstKTI GATC 3 cut(s) 780, 915, 1033
BstMAI GTCTC 8 cut(s) 79, 220, 780, 1196, 1248, 1288, 1310, 1540
BstMBI GATC 3 cut(s) 777, 912, 1030
BstMWI GCNNNNNNNGC 8 cut(s) 521, 530, 763, 940, 994, 1064, 1517, 1595
BstNSI RCATGY 1 cut(s) 947
BstSFI CTRYAG 1 cut(s) 1418
BstUI CGCG 1 cut(s) 1372
BstV1I GCAGC 6 cut(s) 397, 468, 580, 1091, 1432, 1504
BstV2I GAAGAC 2 cut(s) 103, 839
BstX2I RGATCY 1 cut(s) 912
BstYI RGATCY 1 cut(s) 912
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 9 cut(s) 515, 524, 592, 609, 674, 978, 1135, 1206, 1584
BtgI CCRYGG 3 cut(s) 141, 517, 1567
BtsCI GGATG 6 cut(s) 369, 390, 718, 945, 1174, 1193
BtsI GCAGTG 3 cut(s) 506, 941, 1552
BtsIMutI CAGTG 3 cut(s) 506, 941, 1552
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 4 cut(s) 513, 945, 1596, 1600
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 2 cut(s) 1360, 1372
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 6 cut(s) 514, 522, 591, 1133, 1205, 1582
Csp6I GTAC 1 cut(s) 851
CviAII CATG 9 cut(s) 142, 499, 518, 944, 1064, 1276, 1495, 1568, 1579
CviQI GTAC 1 cut(s) 851
DdeI CTNAG 2 cut(s) 1005, 1541
DpnI GATC 3 cut(s) 779, 914, 1032
DpnII GATC 3 cut(s) 777, 912, 1030
DrdI GACNNNNNNGTC 2 cut(s) 1302, 1532
DseDI GACNNNNNNGTC 2 cut(s) 1302, 1532
Eam1104I CTCTTC 3 cut(s) 200, 242, 335
EarI CTCTTC 3 cut(s) 200, 242, 335
Ecl136II GAGCTC 1 cut(s) 1483
Eco130I CCWWGG 5 cut(s) 141, 476, 517, 525, 1567
Eco24I GRGCYC 3 cut(s) 164, 1417, 1485
Eco31I GGTCTC 1 cut(s) 1310
Eco53kI GAGCTC 1 cut(s) 1483
Eco57I CTGAAG 3 cut(s) 1019, 1364, 1491
Eco88I CYCGRG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 1483
EcoO109I RGGNCCY 4 cut(s) 522, 591, 1133, 1205
EcoRI GAATTC 1 cut(s) 557
EcoT14I CCWWGG 5 cut(s) 141, 476, 517, 525, 1567
EcoT22I ATGCAT 3 cut(s) 945, 1069, 1324
EcoT38I GRGCYC 3 cut(s) 164, 1417, 1485
ErhI CCWWGG 5 cut(s) 141, 476, 517, 525, 1567
Esp3I CGTCTC 2 cut(s) 79, 780
FaeI CATG 9 cut(s) 145, 502, 521, 947, 1067, 1279, 1498, 1571, 1582
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 1296
FatI CATG 9 cut(s) 141, 498, 517, 943, 1063, 1275, 1494, 1567, 1578
Fnu4HI GCNGC 6 cut(s) 411, 482, 569, 1080, 1421, 1518
FokI GGATG 6 cut(s) 356, 377, 725, 952, 1181, 1200
FriOI GRGCYC 3 cut(s) 164, 1417, 1485
Fsp4HI GCNGC 6 cut(s) 411, 482, 569, 1080, 1421, 1518
FspBI CTAG 4 cut(s) 729, 1097, 1160, 1352
GlaI GCGC 2 cut(s) 1359, 1371
GluI GCNGC 6 cut(s) 411, 482, 569, 1080, 1421, 1518
HaeII RGCGCY 1 cut(s) 1361
HaeIII GGCC 9 cut(s) 515, 524, 592, 609, 674, 978, 1135, 1206, 1584
HapII CCGG 3 cut(s) 512, 1156, 1197
HhaI GCGC 2 cut(s) 1360, 1372
Hin1II CATG 9 cut(s) 145, 502, 521, 947, 1067, 1279, 1498, 1571, 1582
Hin6I GCGC 2 cut(s) 1358, 1370
HinP1I GCGC 2 cut(s) 1358, 1370
HindIII AAGCTT 2 cut(s) 23, 1040
HpaII CCGG 3 cut(s) 512, 1156, 1197
HphI GGTGA 5 cut(s) 168, 217, 1186, 1403, 1462
HpyCH4III ACNGT 2 cut(s) 257, 496
HpyF10VI GCNNNNNNNGC 8 cut(s) 521, 530, 763, 940, 994, 1064, 1517, 1595
HpyF3I CTNAG 2 cut(s) 1005, 1541
Hsp92II CATG 9 cut(s) 145, 502, 521, 947, 1067, 1279, 1498, 1571, 1582
HspAI GCGC 2 cut(s) 1358, 1370
KroI GCCGGC 1 cut(s) 511
KroNI GCCGGC 1 cut(s) 513
Kzo9I GATC 3 cut(s) 777, 912, 1030
LmnI GCTCC 3 cut(s) 213, 565, 1355
Lsp1109I GCAGC 6 cut(s) 397, 468, 580, 1091, 1432, 1504
LweI GCATC 2 cut(s) 703, 930
MaeI CTAG 4 cut(s) 729, 1097, 1160, 1352
MaeIII GTNAC 2 cut(s) 925, 1450
MalI GATC 3 cut(s) 779, 914, 1032
MboI GATC 3 cut(s) 777, 912, 1030
MflI RGATCY 1 cut(s) 912
MhlI GDGCHC 3 cut(s) 164, 1417, 1485
MluCI AATT 9 cut(s) 5, 77, 557, 772, 900, 1086, 1106, 1436, 1444
MlyI GAGTC 3 cut(s) 55, 258, 1250
Mph1103I ATGCAT 3 cut(s) 945, 1069, 1324
MroNI GCCGGC 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 557
MspI CCGG 3 cut(s) 512, 1156, 1197
MvnI CGCG 1 cut(s) 1372
MwoI GCNNNNNNNGC 8 cut(s) 521, 530, 763, 940, 994, 1064, 1517, 1595
NaeI GCCGGC 1 cut(s) 513
NcoI CCATGG 3 cut(s) 141, 517, 1567
NdeII GATC 3 cut(s) 777, 912, 1030
NgoMIV GCCGGC 1 cut(s) 511
NlaIII CATG 9 cut(s) 145, 502, 521, 947, 1067, 1279, 1498, 1571, 1582
NlaIV GGNNCC 2 cut(s) 504, 523
NmuCI GTSAC 1 cut(s) 1450
NsiI ATGCAT 3 cut(s) 945, 1069, 1324
NspI RCATGY 1 cut(s) 947
PaeI GCATGC 1 cut(s) 947
PdiI GCCGGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 8 cut(s) 119, 351, 700, 951, 967, 1001, 1018, 1102
PkrI GCNGC 6 cut(s) 412, 483, 570, 1081, 1422, 1519
PleI GAGTC 3 cut(s) 54, 258, 1249
PpsI GAGTC 3 cut(s) 54, 258, 1249
Psp124BI GAGCTC 1 cut(s) 1485
PspN4I GGNNCC 2 cut(s) 504, 523
PspPI GGNCC 6 cut(s) 514, 522, 591, 1133, 1205, 1582
PsrI GAACNNNNNNTAC 2 cut(s) 1265, 1297
PstI CTGCAG 1 cut(s) 1422
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 912
RsaI GTAC 1 cut(s) 852
RsaNI GTAC 1 cut(s) 851
SacI GAGCTC 1 cut(s) 1485
SatI GCNGC 6 cut(s) 411, 482, 569, 1080, 1421, 1518
Sau3AI GATC 3 cut(s) 777, 912, 1030
Sau96I GGNCC 6 cut(s) 514, 522, 591, 1133, 1205, 1582
SchI GAGTC 3 cut(s) 55, 258, 1250
SduI GDGCHC 3 cut(s) 164, 1417, 1485
SfaNI GCATC 2 cut(s) 703, 930
SfcI CTRYAG 1 cut(s) 1418
SfiI GGCCNNNNNGGCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 947
Sse9I AATT 9 cut(s) 5, 77, 557, 772, 900, 1086, 1106, 1436, 1444
SsiI CCGC 4 cut(s) 111, 182, 932, 1372
SspI AATATT 2 cut(s) 189, 538
SspMI CTAG 4 cut(s) 729, 1097, 1160, 1352
SstI GAGCTC 1 cut(s) 1485
StyI CCWWGG 5 cut(s) 141, 476, 517, 525, 1567
TaaI ACNGT 2 cut(s) 257, 496
TaqI TCGA 3 cut(s) 619, 813, 970
TasI AATT 9 cut(s) 5, 77, 557, 772, 900, 1086, 1106, 1436, 1444
TfiI GAWTC 8 cut(s) 119, 351, 700, 951, 967, 1001, 1018, 1102
TscAI CASTG 3 cut(s) 513, 941, 1552
TseFI GTSAC 1 cut(s) 1450
TseI GCWGC 6 cut(s) 410, 481, 568, 1079, 1420, 1517
Tsp45I GTSAC 1 cut(s) 1450
TspDTI ATGAA 3 cut(s) 17, 920, 1511
TspRI CASTG 3 cut(s) 513, 941, 1552
XapI RAATTY 5 cut(s) 5, 77, 557, 1436, 1444
XceI RCATGY 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 4 cut(s) 729, 1097, 1160, 1352
Zsp2I ATGCAT 3 cut(s) 945, 1069, 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.