Rh7BG115100

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012228
Physical Location & Seq
Forward (+)
8603470 .. 8606171
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG115100.1

Sequence Viewer

Length: 1224 bp
ATGGCGAAATCAAGAACGAGCCCCAAGACAACATCACGAAACCCATCACCATCACCACCGCCATTCCTCTTCCACTACTTACTCCCAGTCTCTCCACTCACCACCCTCCTCTTCTCCCCCAAAACGCACCGTTTCAGACTCCCCAAACCCTCCTCCTCCTCCTCATCATCATCTCCCCCAATCCTCCTTCTCTGTTTCCTCTTCTCCCTCACTTTCTTGGGAATCTCAATCCTCAACCTCATCCCCACCCACTCTGCCATCATCCCCTGTTCCCACTCTGCTGCCTCCACTCCTTCCCTCTCCCCCATTCCCCCGAAAACCTCTTCTTCGGGCTTTATCGACGACCCGAGGCTGCTTTCGGATACTGTCATGGTGCCACTGCCCGCCCATGGGGCCTTGGGGGCTAATCTTTCCTCGGCGGAGAAGGAATTCTGGGAGCAGCCCAATGGGGAAGGGTTTAGGCCCTGCTTGGATTTCGGCCTCGGGTATCGAAAATCGTCTGCCAAGATTGTGAAAGAGAGGAGGAGGTTCTTGCTGGTGGTGGCCTCTGGGGGTCTGAACCAGCAGAGGAATCAGATTGTGGATGCTGTTGTCATTGCTAGGGTTCTTGAGGCTGTTTTGGTTGTGCCTGTTTTGCAGGTCAATTTGATCTGGGGAGACGAAAGTGAGTTTTCGGATATTTTCGATGTGGCACACTTCAAGAGGACTTTACAAGCTGATGTACGAGTTGTGTCAAATCTTCCCTCTACACATTTGATGTCAAGACAGACAATTATGAACAAGATCCCTCACGATGTTACTCCGCAGTGGATACATGCCAGATTCTATAATCAACTGAATCGAGATGGCCTTCTTGTGCTAAAAGGGCTGGATTCTAAGCTCTCAAAGAATCTCCCCCCTGATCTTCAGAAGCTTCGGTGTAAGGTTGCTTTCCATGCATTGAGATTTGCAGCACCAATTCAAGCACTAGGGAATCAATTAGCAAAGAGAATGTGGATTGAAGGGCCTTACATTGCACTCCATCTCCGGCTAGAGAAGGATGTGTGGGTCAGAACAGGATGTCTCACCGGATTAGGCCCTGAATATGATGACATTATCACAAAGGTTCGGGAGTCTCAACCCGAATATCTTACAGGACGATTGAACATGACCTACAACCAAAGGAGACTTGCTGGTCTCTGTCCCCTAAATGCATTAGAAATAGCAAGGTATGTACTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

407

Amino Acids

45.26

Weight (kDa)

9.75

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 177 - 400 3.6e-58 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63390
fragaria_vesca FvH4_5g07850
malus_domestica MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica Prupe.5G153800_v2.0.a1
pyrus_communis pycom06g13480
rosa_chinensis RchiOBHm_Chr7g0190611
rosa_laevigata RLG00000004510
rosa_multiflora Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii Rroxscaffold_3G00264460
rosa_rugosa Rorug06G0505600 Rorug06G0505700
rosa_samantha Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana Rw7G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1173
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 373
AciI CCGC 4 cut(s) 59, 384, 419, 803
AclWI GGATC 1 cut(s) 778
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 890
AfaI GTAC 2 cut(s) 723, 1215
AfiI CCNNNNNNNGG 2 cut(s) 389, 390
AgsI TTSAA 4 cut(s) 700, 962, 1001, 1144
AluBI AGCT 3 cut(s) 716, 880, 913
AluI AGCT 3 cut(s) 716, 880, 913
Alw26I GTCTC 6 cut(s) 94, 651, 1067, 1119, 1159, 1181
AlwI GGATC 1 cut(s) 778
Ama87I CYCGRG 2 cut(s) 346, 482
AoxI GGCC 7 cut(s) 393, 461, 478, 543, 847, 1004, 1075
ApeKI GCWGC 4 cut(s) 281, 352, 439, 950
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 428
AspS9I GGNCC 4 cut(s) 393, 462, 1004, 1076
AsuHPI GGTGA 4 cut(s) 39, 45, 91, 1057
AvaI CYCGRG 2 cut(s) 346, 482
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 23
BbvI GCAGC 4 cut(s) 268, 339, 451, 962
BccI CCATC 5 cut(s) 52, 58, 266, 839, 1029
BciVI GTATCC 2 cut(s) 355, 804
BcoDI GTCTC 6 cut(s) 94, 651, 1067, 1119, 1159, 1181
BfaI CTAG 3 cut(s) 600, 968, 1031
BfmI CTRYAG 1 cut(s) 1220
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 2 cut(s) 355, 804
BglI GCCNNNNNGGC 2 cut(s) 392, 401
BisI GCNGC 4 cut(s) 282, 353, 440, 951
BlsI GCNGC 4 cut(s) 283, 354, 441, 952
BmeT110I CYCGRG 2 cut(s) 346, 482
BmgT120I GGNCC 4 cut(s) 393, 462, 1004, 1076
BmiI GGNNCC 2 cut(s) 375, 394
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 5 cut(s) 347, 388, 396, 414, 481
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 390
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 2 cut(s) 594, 1011
BseDI CCNNGG 5 cut(s) 347, 388, 396, 414, 481
BseGI GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BseLI CCNNNNNNNGG 2 cut(s) 389, 390
BseMI GCAATG 2 cut(s) 594, 1011
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 7 cut(s) 98, 142, 145, 148, 151, 535, 538
BseXI GCAGC 4 cut(s) 268, 339, 451, 962
BshFI GGCC 7 cut(s) 395, 463, 480, 545, 849, 1006, 1077
BshNI GGYRCC 1 cut(s) 373
BsiHKCI CYCGRG 2 cut(s) 346, 482
BsiSI CCGG 2 cut(s) 1027, 1068
BslFI GGGAC 1 cut(s) 1167
BslI CCNNNNNNNGG 2 cut(s) 389, 390
BsmAI GTCTC 6 cut(s) 94, 651, 1067, 1119, 1159, 1181
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 1167
BsnI GGCC 7 cut(s) 395, 463, 480, 545, 849, 1006, 1077
Bso31I GGTCTC 1 cut(s) 1181
BsoBI CYCGRG 2 cut(s) 346, 482
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 648, 783, 901
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 4 cut(s) 59, 384, 419, 803
BspANI GGCC 7 cut(s) 395, 463, 480, 545, 849, 1006, 1077
BspLI GGNNCC 2 cut(s) 375, 394
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 1181
BsrDI GCAATG 2 cut(s) 594, 1011
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 5 cut(s) 347, 388, 396, 414, 481
BssMI GATC 3 cut(s) 648, 783, 901
BssT1I CCWWGG 2 cut(s) 388, 396
Bst4CI ACNGT 2 cut(s) 131, 367
Bst6I CTCTTC 4 cut(s) 74, 116, 206, 328
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BstKTI GATC 3 cut(s) 651, 786, 904
BstMAI GTCTC 6 cut(s) 94, 651, 1067, 1119, 1159, 1181
BstMBI GATC 3 cut(s) 648, 783, 901
BstMWI GCNNNNNNNGC 5 cut(s) 392, 401, 634, 865, 935
BstNSI RCATGY 1 cut(s) 818
BstSFI CTRYAG 1 cut(s) 1220
BstV1I GCAGC 4 cut(s) 268, 339, 451, 962
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuI GTATCC 2 cut(s) 355, 804
BsuRI GGCC 7 cut(s) 395, 463, 480, 545, 849, 1006, 1077
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 5 cut(s) 240, 261, 589, 1045, 1064
BtsI GCAGTG 2 cut(s) 377, 812
BtsIMutI CAGTG 2 cut(s) 377, 812
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 4 cut(s) 393, 462, 1004, 1076
Csp6I GTAC 2 cut(s) 722, 1214
CviAII CATG 5 cut(s) 370, 389, 815, 935, 1147
CviQI GTAC 2 cut(s) 722, 1214
DdeI CTNAG 1 cut(s) 876
DpnI GATC 3 cut(s) 650, 785, 903
DpnII GATC 3 cut(s) 648, 783, 901
DrdI GACNNNNNNGTC 1 cut(s) 1173
DseDI GACNNNNNNGTC 1 cut(s) 1173
Eam1104I CTCTTC 4 cut(s) 74, 116, 206, 328
EarI CTCTTC 4 cut(s) 74, 116, 206, 328
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 388, 396
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 1181
Eco57I CTGAAG 1 cut(s) 890
Eco88I CYCGRG 2 cut(s) 346, 482
EcoO109I RGGNCCY 4 cut(s) 393, 462, 1004, 1076
EcoRI GAATTC 1 cut(s) 428
EcoT14I CCWWGG 2 cut(s) 388, 396
EcoT22I ATGCAT 2 cut(s) 940, 1195
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 2 cut(s) 388, 396
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 5 cut(s) 373, 392, 818, 938, 1150
FaqI GGGAC 1 cut(s) 1167
FatI CATG 5 cut(s) 369, 388, 814, 934, 1146
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 4 cut(s) 282, 353, 440, 951
FokI GGATG 5 cut(s) 227, 248, 596, 1052, 1071
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 282, 353, 440, 951
FspBI CTAG 3 cut(s) 600, 968, 1031
GluI GCNGC 4 cut(s) 282, 353, 440, 951
HaeIII GGCC 7 cut(s) 395, 463, 480, 545, 849, 1006, 1077
HapII CCGG 2 cut(s) 1027, 1068
Hin1II CATG 5 cut(s) 373, 392, 818, 938, 1150
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 9 cut(s) 138, 222, 571, 822, 838, 872, 889, 973, 1112
HpaII CCGG 2 cut(s) 1027, 1068
HphI GGTGA 4 cut(s) 39, 45, 91, 1057
Hpy188I TCNGA 7 cut(s) 137, 361, 558, 576, 676, 909, 1052
Hpy188III TCNNGA 8 cut(s) 12, 36, 608, 700, 762, 791, 842, 1109
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 7 cut(s) 197, 303, 418, 446, 860, 995, 1030
HpyCH4III ACNGT 2 cut(s) 131, 367
HpyCH4V TGCA 5 cut(s) 637, 938, 950, 1016, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 401, 634, 865, 935
HpyF3I CTNAG 1 cut(s) 876
Hsp92II CATG 5 cut(s) 373, 392, 818, 938, 1150
Kzo9I GATC 3 cut(s) 648, 783, 901
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 4 cut(s) 268, 339, 451, 962
LweI GCATC 1 cut(s) 574
MaeI CTAG 3 cut(s) 600, 968, 1031
MaeIII GTNAC 1 cut(s) 796
MalI GATC 3 cut(s) 650, 785, 903
MboI GATC 3 cut(s) 648, 783, 901
MboII GAAGA 7 cut(s) 61, 103, 193, 315, 318, 731, 896
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 5 cut(s) 428, 643, 771, 957, 977
MlyI GAGTC 2 cut(s) 132, 1121
Mph1103I ATGCAT 2 cut(s) 940, 1195
MroXI GAANNNNTTC 1 cut(s) 428
MspI CCGG 2 cut(s) 1027, 1068
MwoI GCNNNNNNNGC 5 cut(s) 392, 401, 634, 865, 935
NcoI CCATGG 1 cut(s) 388
NdeII GATC 3 cut(s) 648, 783, 901
NlaIII CATG 5 cut(s) 373, 392, 818, 938, 1150
NlaIV GGNNCC 2 cut(s) 375, 394
NmeAIII GCCGAG 1 cut(s) 395
NsiI ATGCAT 2 cut(s) 940, 1195
NspI RCATGY 1 cut(s) 818
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 7 cut(s) 222, 571, 822, 838, 872, 889, 973
PkrI GCNGC 4 cut(s) 283, 354, 441, 952
PleI GAGTC 2 cut(s) 132, 1120
PpsI GAGTC 2 cut(s) 132, 1120
PspN4I GGNNCC 2 cut(s) 375, 394
PspPI GGNCC 4 cut(s) 393, 462, 1004, 1076
PsrI GAACNNNNNNTAC 2 cut(s) 1136, 1168
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 2 cut(s) 723, 1215
RsaNI GTAC 2 cut(s) 722, 1214
SatI GCNGC 4 cut(s) 282, 353, 440, 951
Sau3AI GATC 3 cut(s) 648, 783, 901
Sau96I GGNCC 4 cut(s) 393, 462, 1004, 1076
SchI GAGTC 2 cut(s) 132, 1121
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 1220
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 5 cut(s) 428, 643, 771, 957, 977
SsiI CCGC 4 cut(s) 59, 384, 419, 803
SspMI CTAG 3 cut(s) 600, 968, 1031
StyI CCWWGG 2 cut(s) 388, 396
TaaI ACNGT 2 cut(s) 131, 367
TaqI TCGA 4 cut(s) 339, 490, 684, 841
TasI AATT 5 cut(s) 428, 643, 771, 957, 977
TatI WGTACW 1 cut(s) 1213
TfiI GAWTC 7 cut(s) 222, 571, 822, 838, 872, 889, 973
TscAI CASTG 2 cut(s) 384, 812
TseI GCWGC 4 cut(s) 281, 352, 439, 950
TspDTI ATGAA 1 cut(s) 791
TspRI CASTG 2 cut(s) 384, 812
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 3 cut(s) 600, 968, 1031
Zsp2I ATGCAT 2 cut(s) 940, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.