Rmu_sc0026450.1_g000001

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026450.1
OG0012228
Physical Location & Seq
Forward (+)
1 .. 1112
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026450.1_g000001.1.cds

Sequence Viewer

Length: 814 bp
tgagttttcagatattttcgatgtggcacacttcaagaggactttacaagctgatgtgcgagttgtgtcaaatcttccctctacacatttgatgtcaagacagaaaattatgaacaagatccctcacgatgtcactccgcagtggatacatgccagattctataatcaactgaatcaagatggccttcttgtgctaaaggggctggattctaagctctcaaagaatctcccccctgatcttcagaagcttcggtgtaaggttgctttccatgcattgagatttgcagcaccaattcaagcactagggaatcaattagcaaagagaatgtggattgaagggccttacattgcactccatctccggctagagaaggatgtgtgggtcagaacaggatgtctcaccggattaggccctgaatatgatgacattatcacaaaggttcgggagtctcaacccgaatatcttacaggacgattgaacatgacctacaaccaaaggagacttgctggtctctgtcccctaaatgcattagaaatagcaaggcttttgaagggtctaggagcgccaagaagtgcgcggatatatagtgcaggaggtgaggcatttggggaaagcagggctctgcagccacttgtggcagaatttccaaatttggtgacaaaggagatgttggcgaaagaaggagagctctctccatacatgaacaagccttcagctctggctgccattgactaccttgtctctctaagcagtgatgtctttgtgccttcccatggtggaaacatgggccgagcaatgcaggcaagcacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

270

Amino Acids

30.11

Weight (kDa)

9.42

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63390
fragaria_vesca FvH4_5g07850
malus_domestica MD06G1145500.v1.1 MD14G1160200.v1.1
prunus_persica Prupe.5G153800_v2.0.a1
pyrus_communis pycom06g13480
rosa_chinensis RchiOBHm_Chr7g0190611
rosa_laevigata RLG00000004510
rosa_multiflora Rmu_sc0006709.1_g000010 Rmu_sc0023847.1_g000002 Rmu_sc0026450.1_g000001
rosa_roxburghii Rroxscaffold_3G00264460
rosa_rugosa Rorug06G0505600 Rorug06G0505700
rosa_samantha Rh7AG112300 Rh7BG115100 Rh7CG117200 Rh7DG116300
rosa_wichuraiana Rw7G009800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 508, 738
AccII CGCG 1 cut(s) 578
AciI CCGC 2 cut(s) 138, 578
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 2 cut(s) 642, 650
AcuI CTGAAG 2 cut(s) 225, 697
AfiI CCNNNNNNNGG 1 cut(s) 774
AgsI TTSAA 5 cut(s) 35, 297, 336, 479, 551
AluBI AGCT 5 cut(s) 51, 215, 248, 689, 717
AluI AGCT 5 cut(s) 51, 215, 248, 689, 717
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 5 cut(s) 402, 454, 494, 516, 746
AlwI GGATC 1 cut(s) 113
AoxI GGCC 4 cut(s) 182, 339, 410, 788
ApeKI GCWGC 3 cut(s) 285, 626, 723
ApoI RAATTY 2 cut(s) 642, 650
AspLEI GCGC 2 cut(s) 566, 578
AspS9I GGNCC 3 cut(s) 339, 411, 788
AsuHPI GGTGA 3 cut(s) 392, 609, 668
BanII GRGCYC 2 cut(s) 623, 691
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 3 cut(s) 297, 638, 710
BccI CCATC 2 cut(s) 174, 364
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 5 cut(s) 402, 454, 494, 516, 746
BfaI CTAG 3 cut(s) 303, 366, 558
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 567
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 3 cut(s) 286, 627, 724
BlsI GCNGC 3 cut(s) 287, 628, 725
BmgT120I GGNCC 3 cut(s) 339, 411, 788
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 773
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 774
Bse3DI GCAATG 2 cut(s) 346, 802
BseDI CCNNGG 1 cut(s) 773
BseGI GGATG 2 cut(s) 380, 399
BseLI CCNNNNNNNGG 1 cut(s) 774
BseMI GCAATG 2 cut(s) 346, 802
BseXI GCAGC 3 cut(s) 297, 638, 710
BsgI GTGCAG 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 4 cut(s) 184, 341, 412, 790
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 2 cut(s) 362, 403
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 774
BsmAI GTCTC 5 cut(s) 402, 454, 494, 516, 746
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 4 cut(s) 184, 341, 412, 790
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 623, 691
Bsp143I GATC 2 cut(s) 118, 236
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 2 cut(s) 138, 578
BspANI GGCC 4 cut(s) 184, 341, 412, 790
BspFNI CGCG 1 cut(s) 578
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 516
BsrDI GCAATG 2 cut(s) 346, 802
BssECI CCNNGG 1 cut(s) 773
BssMI GATC 2 cut(s) 118, 236
BssT1I CCWWGG 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 802, 806
BstDEI CTNAG 2 cut(s) 211, 747
BstDSI CCRYGG 1 cut(s) 773
BstF5I GGATG 2 cut(s) 380, 399
BstFNI CGCG 1 cut(s) 578
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 2 cut(s) 566, 578
BstKTI GATC 2 cut(s) 121, 239
BstMAI GTCTC 5 cut(s) 402, 454, 494, 516, 746
BstMBI GATC 2 cut(s) 118, 236
BstMWI GCNNNNNNNGC 4 cut(s) 200, 270, 723, 801
BstNSI RCATGY 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 3 cut(s) 297, 638, 710
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 4 cut(s) 184, 341, 412, 790
BtgI CCRYGG 1 cut(s) 773
BtsCI GGATG 2 cut(s) 380, 399
BtsI GCAGTG 2 cut(s) 147, 758
BtsIMutI CAGTG 2 cut(s) 147, 758
Cac8I GCNNGC 2 cut(s) 802, 806
CfoI GCGC 2 cut(s) 566, 578
Cfr13I GGNCC 3 cut(s) 339, 411, 788
CviAII CATG 6 cut(s) 150, 270, 482, 701, 774, 785
DdeI CTNAG 2 cut(s) 211, 747
DpnI GATC 2 cut(s) 120, 238
DpnII GATC 2 cut(s) 118, 236
DrdI GACNNNNNNGTC 2 cut(s) 508, 738
DseDI GACNNNNNNGTC 2 cut(s) 508, 738
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 773
Eco24I GRGCYC 2 cut(s) 623, 691
Eco31I GGTCTC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 225, 697
EcoICRI GAGCTC 1 cut(s) 689
EcoO109I RGGNCCY 2 cut(s) 339, 411
EcoT14I CCWWGG 1 cut(s) 773
EcoT22I ATGCAT 2 cut(s) 275, 530
EcoT38I GRGCYC 2 cut(s) 623, 691
ErhI CCWWGG 1 cut(s) 773
FaeI CATG 6 cut(s) 153, 273, 485, 704, 777, 788
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FaqI GGGAC 1 cut(s) 502
FatI CATG 6 cut(s) 149, 269, 481, 700, 773, 784
Fnu4HI GCNGC 3 cut(s) 286, 627, 724
FokI GGATG 2 cut(s) 387, 406
FriOI GRGCYC 2 cut(s) 623, 691
Fsp4HI GCNGC 3 cut(s) 286, 627, 724
FspBI CTAG 3 cut(s) 303, 366, 558
GlaI GCGC 2 cut(s) 565, 577
GluI GCNGC 3 cut(s) 286, 627, 724
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 4 cut(s) 184, 341, 412, 790
HapII CCGG 2 cut(s) 362, 403
HhaI GCGC 2 cut(s) 566, 578
Hin1II CATG 6 cut(s) 153, 273, 485, 704, 777, 788
Hin6I GCGC 2 cut(s) 564, 576
HinP1I GCGC 2 cut(s) 564, 576
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 6 cut(s) 157, 173, 207, 224, 308, 447
HpaII CCGG 2 cut(s) 362, 403
HphI GGTGA 3 cut(s) 392, 609, 668
Hpy188I TCNGA 3 cut(s) 11, 244, 387
Hpy188III TCNNGA 5 cut(s) 35, 97, 126, 177, 444
HpyAV CCTTC 7 cut(s) 195, 330, 365, 545, 675, 721, 778
HpyCH4V TGCA 7 cut(s) 273, 285, 351, 528, 591, 626, 800
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 270, 723, 801
HpyF3I CTNAG 2 cut(s) 211, 747
Hsp92II CATG 6 cut(s) 153, 273, 485, 704, 777, 788
HspAI GCGC 2 cut(s) 564, 576
Kzo9I GATC 2 cut(s) 118, 236
LmnI GCTCC 1 cut(s) 561
Lsp1109I GCAGC 3 cut(s) 297, 638, 710
MaeI CTAG 3 cut(s) 303, 366, 558
MaeIII GTNAC 2 cut(s) 131, 656
MalI GATC 2 cut(s) 120, 238
MboI GATC 2 cut(s) 118, 236
MboII GAAGA 2 cut(s) 66, 231
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 623, 691
MluCI AATT 5 cut(s) 106, 292, 312, 642, 650
MlyI GAGTC 1 cut(s) 456
MnlI CCTC 5 cut(s) 31, 89, 133, 588, 593
Mph1103I ATGCAT 2 cut(s) 275, 530
MspI CCGG 2 cut(s) 362, 403
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 4 cut(s) 200, 270, 723, 801
NcoI CCATGG 1 cut(s) 773
NdeII GATC 2 cut(s) 118, 236
NlaIII CATG 6 cut(s) 153, 273, 485, 704, 777, 788
NmuCI GTSAC 2 cut(s) 131, 656
NsiI ATGCAT 2 cut(s) 275, 530
NspI RCATGY 1 cut(s) 153
PfeI GAWTC 5 cut(s) 157, 173, 207, 224, 308
PkrI GCNGC 3 cut(s) 287, 628, 725
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 691
PspPI GGNCC 3 cut(s) 339, 411, 788
PsrI GAACNNNNNNTAC 2 cut(s) 471, 503
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 118
SacI GAGCTC 1 cut(s) 691
SatI GCNGC 3 cut(s) 286, 627, 724
Sau3AI GATC 2 cut(s) 118, 236
Sau96I GGNCC 3 cut(s) 339, 411, 788
SchI GAGTC 1 cut(s) 456
SduI GDGCHC 2 cut(s) 623, 691
SfcI CTRYAG 1 cut(s) 624
Sse9I AATT 5 cut(s) 106, 292, 312, 642, 650
SsiI CCGC 2 cut(s) 138, 578
SspMI CTAG 3 cut(s) 303, 366, 558
SstI GAGCTC 1 cut(s) 691
StyI CCWWGG 1 cut(s) 773
TaqI TCGA 1 cut(s) 19
TasI AATT 5 cut(s) 106, 292, 312, 642, 650
TfiI GAWTC 5 cut(s) 157, 173, 207, 224, 308
TscAI CASTG 2 cut(s) 147, 758
TseFI GTSAC 2 cut(s) 131, 656
TseI GCWGC 3 cut(s) 285, 626, 723
Tsp45I GTSAC 2 cut(s) 131, 656
TspDTI ATGAA 2 cut(s) 126, 717
TspRI CASTG 2 cut(s) 147, 758
XapI RAATTY 2 cut(s) 642, 650
XceI RCATGY 1 cut(s) 153
XspI CTAG 3 cut(s) 303, 366, 558
Zsp2I ATGCAT 2 cut(s) 275, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.