Rw7G009800

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
9084347 .. 9086896
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009800.1

Sequence Viewer

Length: 1698 bp
ATGGCGAAATCAAGAACGAGCCCCAAGACAACATCACGAAACCCATCACCATCACCACCGCCAATATTCCTCTTCCACTACTTGCTCCCAGTCTCTGCACTCACCACCCTCCTCTTCTCCCCCAAAACGCACCGTTTCAGACTCCCCAAACCCTCCTCCTCCTCCTCATCATCATCTCCCTCAATCCTCCTTCTCTGTTTCCTCTTCTCCCTCACTTTCTTGGGAATCTCACTCCTCAATCTCATCCCCACCTACTCTGCCATCATCCCCTGTTCCCACTCTGCTGCCTCCACTCCTTCCCTCTCCCCCATTTCCCCGAAAACCTCTTCTTCGGGCTTTATCGACGACCCGAGGCTGCTTTCGGATACTGTCATGGTGCCACTGCCGGCCCATGGGGCCTTGGGGGCTAATCTTTCCTCGGAGGAGAAGGAATTCTGGGAGCAGCCCAATGGGGAAGGGTTTAGGCCCTGCTTGGATTTCGGCCTCGGGTATCGAATATCGTCTTCCAAGATTGTGAAAGAGAGGAGGAGGTTCTTGCTGGTGGTGGCCTCTGGGGGTCTGAACCAGCAGAGGAATCAGATTGTGGATGCTGTTGTCATTGCTAGGGTTCTTGAGGCTGTTTTGGTTGTGCCTGTTTTGCAGGTCAATTTGATCTGGGGAGACGAAAGTGAGTTTTCAGATATTTTCGATGTGGCACACTTCAAGAGGACTTTACAAGCTGATGTACGAGTTGTGTCAAATCTGCCCTCTACACATTTGATGTCAAGACAGAAAATTATGAACAAGATCCCTCACGATGTTACTCCGCAGTGGATACATGCCAGATTCTATAATCAACTGAATCAAGATGGCCTTCTTGTGCTAAAAGGGCTGGATTCTAAGCTCTCAAAGAATCTCCCCCCTGATCTTCAGAAGCTTCGGTGTAAGGTTGCTTTCCATTCATTGAGATTTGCAGCGCCAATTCAAGCACTAGGGAATCAATTAGCAAAGAGAATGTGGATTGAAGGGCCTTACATTGCACTCCATCTCCGGCTAGAGAAGGATGTGTGGGTCAGAACAGGATGTCTCACCGGATTAGGCCCTGAATATGATGACATTATCACAAAGGTTCGGGAGTCTCAACCCGAATATCTTACAGGACGATTGAACATGACCTACAACCAAAGGAGACTTGCTGGTCTCTGTCCCCTAAATGCATTAGAAATAGCAAGGCTTTTGAAGGGTCTAGGAGCGCCAAGAAGTGCACGGATATATAGTGCAGGAGGTGAGGCATTTGGGGAAAGCAGGGCTCTGCAGCCACTTGTGGCAGAATTTCCAAATTTGGTGACAAAGGAGATGTTGGCGAAAGAAGGAGAGCTCTCTCCATACATGAACAAGCATTCAGCTCTGGCTGCCATTGACTACCTTGTCTCTCTAAGCAGTGATGTCTTTGTGCCTTCCCATGGTGGAAACATGGGCCGAGCAATGCAGGGTCACCGTGCTTATGTGGGACATAGAAAGTTCATAAAGCCGAACAAGAGAGCAATGATGCCTCTGTTTGAAGATACATTGATTAGTGATGATGAGTTCGGAAGCATCATGAGGGAGCTGCATAAGTCTCAGGGGAAGCCTGAGCCAAGAGGTTACATGAGAAACCGAGATGTGATTTCGCACCCTGTGCCTGAGTGCATGTGTAAACACAAAACAGGCATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

62.78

Weight (kDa)

9.57

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 178 - 495 6.6e-87 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012228)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1176, 1406
Acc36I ACCTGC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 376
AciI CCGC 2 cut(s) 59, 806
AclWI GGATC 1 cut(s) 781
AcsI RAATTY 3 cut(s) 431, 1310, 1318
AcuI CTGAAG 1 cut(s) 893
AdeI CACNNNGTG 1 cut(s) 1657
AfaI GTAC 1 cut(s) 726
AfiI CCNNNNNNNGG 2 cut(s) 392, 1442
AgsI TTSAA 6 cut(s) 703, 965, 1004, 1147, 1219, 1541
AluBI AGCT 6 cut(s) 719, 883, 916, 1357, 1385, 1588
AluI AGCT 6 cut(s) 719, 883, 916, 1357, 1385, 1588
Alw21I GWGCWC 2 cut(s) 1246, 1359
Alw26I GTCTC 8 cut(s) 97, 654, 1070, 1122, 1162, 1184, 1414, 1602
Alw44I GTGCAC 1 cut(s) 1242
AlwI GGATC 1 cut(s) 781
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 2 cut(s) 349, 485
AoxI GGCC 9 cut(s) 387, 396, 464, 481, 546, 850, 1007, 1078, 1456
ApaLI GTGCAC 1 cut(s) 1242
ApeKI GCWGC 7 cut(s) 284, 355, 442, 953, 1294, 1391, 1588
ApoI RAATTY 3 cut(s) 431, 1310, 1318
Asp700I GAANNNNTTC 1 cut(s) 431
AspLEI GCGC 2 cut(s) 958, 1234
AspS9I GGNCC 6 cut(s) 388, 396, 465, 1007, 1079, 1456
AsuHPI GGTGA 7 cut(s) 39, 45, 94, 1060, 1277, 1336, 1466
AvaI CYCGRG 2 cut(s) 349, 485
BaeGI GKGCMC 1 cut(s) 1246
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 3 cut(s) 23, 1291, 1359
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 1246, 1359
BbvI GCAGC 7 cut(s) 271, 342, 454, 965, 1306, 1378, 1575
BccI CCATC 5 cut(s) 52, 58, 269, 842, 1032
BciVI GTATCC 2 cut(s) 358, 807
BcoDI GTCTC 8 cut(s) 97, 654, 1070, 1122, 1162, 1184, 1414, 1602
BfaI CTAG 5 cut(s) 603, 971, 1034, 1226, 1696
BfmI CTRYAG 1 cut(s) 1292
BfoI RGCGCY 2 cut(s) 959, 1235
BfuAI ACCTGC 1 cut(s) 631
BfuI GTATCC 2 cut(s) 358, 807
BglI GCCNNNNNGGC 2 cut(s) 395, 404
BisI GCNGC 7 cut(s) 285, 356, 443, 954, 1295, 1392, 1589
BlsI GCNGC 7 cut(s) 286, 357, 444, 955, 1296, 1393, 1590
BmeT110I CYCGRG 2 cut(s) 349, 485
BmgT120I GGNCC 6 cut(s) 388, 396, 465, 1007, 1079, 1456
BmiI GGNNCC 2 cut(s) 378, 397
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 577, 1518, 1584
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 1611
BpuEI CTTGAG 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 1184
BsaJI CCNNGG 6 cut(s) 350, 391, 399, 417, 484, 1441
BsaWI WCCGGW 1 cut(s) 1070
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 1442
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 4 cut(s) 597, 1014, 1470, 1530
BseDI CCNNGG 6 cut(s) 350, 391, 399, 417, 484, 1441
BseGI GGATG 5 cut(s) 243, 264, 592, 1048, 1067
BseLI CCNNNNNNNGG 2 cut(s) 392, 1442
BseMI GCAATG 4 cut(s) 597, 1014, 1470, 1530
BseMII CTCAG 3 cut(s) 1602, 1613, 1653
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 9 cut(s) 101, 145, 148, 151, 154, 224, 437, 538, 541
BseSI GKGCMC 1 cut(s) 1246
BseXI GCAGC 7 cut(s) 271, 342, 454, 965, 1306, 1378, 1575
BsgI GTGCAG 2 cut(s) 81, 1278
BshFI GGCC 9 cut(s) 389, 398, 466, 483, 548, 852, 1009, 1080, 1458
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 2 cut(s) 1246, 1359
BsiHKCI CYCGRG 2 cut(s) 349, 485
BsiSI CCGG 3 cut(s) 386, 1030, 1071
BslFI GGGAC 2 cut(s) 1170, 1503
BslI CCNNNNNNNGG 2 cut(s) 392, 1442
BsmAI GTCTC 8 cut(s) 97, 654, 1070, 1122, 1162, 1184, 1414, 1602
BsmBI CGTCTC 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 1170, 1503
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 9 cut(s) 389, 398, 466, 483, 548, 852, 1009, 1080, 1458
Bso31I GGTCTC 1 cut(s) 1184
BsoBI CYCGRG 2 cut(s) 349, 485
Bsp1286I GDGCHC 4 cut(s) 23, 1246, 1291, 1359
Bsp143I GATC 3 cut(s) 651, 786, 904
Bsp19I CCATGG 2 cut(s) 391, 1441
BspACI CCGC 2 cut(s) 59, 806
BspANI GGCC 9 cut(s) 389, 398, 466, 483, 548, 852, 1009, 1080, 1458
BspCNI CTCAG 3 cut(s) 1603, 1612, 1654
BspHI TCATGA 1 cut(s) 1578
BspLI GGNNCC 2 cut(s) 378, 397
BspMAI CTGCAG 1 cut(s) 1296
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 1 cut(s) 781
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 1184
BsrDI GCAATG 4 cut(s) 597, 1014, 1470, 1530
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 6 cut(s) 350, 391, 399, 417, 484, 1441
BssMI GATC 3 cut(s) 651, 786, 904
BssT1I CCWWGG 3 cut(s) 391, 399, 1441
Bst4CI ACNGT 3 cut(s) 134, 370, 1478
Bst6I CTCTTC 4 cut(s) 77, 119, 209, 331
BstAPI GCANNNNNTGC 1 cut(s) 1657
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 5 cut(s) 879, 1415, 1599, 1611, 1662
BstDSI CCRYGG 2 cut(s) 391, 1441
BstEII GGTNACC 1 cut(s) 1472
BstF5I GGATG 5 cut(s) 243, 264, 592, 1048, 1067
BstH2I RGCGCY 2 cut(s) 959, 1235
BstHHI GCGC 2 cut(s) 958, 1234
BstKTI GATC 3 cut(s) 654, 789, 907
BstMAI GTCTC 8 cut(s) 97, 654, 1070, 1122, 1162, 1184, 1414, 1602
BstMBI GATC 3 cut(s) 651, 786, 904
BstMWI GCNNNNNNNGC 6 cut(s) 395, 404, 637, 868, 1391, 1657
BstNSI RCATGY 2 cut(s) 821, 1672
BstPI GGTNACC 1 cut(s) 1472
BstSFI CTRYAG 1 cut(s) 1292
BstSLI GKGCMC 1 cut(s) 1246
BstV1I GCAGC 7 cut(s) 271, 342, 454, 965, 1306, 1378, 1575
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 786
BstYI RGATCY 1 cut(s) 786
BsuI GTATCC 2 cut(s) 358, 807
BsuRI GGCC 9 cut(s) 389, 398, 466, 483, 548, 852, 1009, 1080, 1458
BtgI CCRYGG 2 cut(s) 391, 1441
BtsCI GGATG 5 cut(s) 243, 264, 592, 1048, 1067
BtsI GCAGTG 3 cut(s) 380, 815, 1426
BtsIMutI CAGTG 3 cut(s) 380, 815, 1426
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 1578
CfoI GCGC 2 cut(s) 958, 1234
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 6 cut(s) 388, 396, 465, 1007, 1079, 1456
Csp6I GTAC 1 cut(s) 725
CviQI GTAC 1 cut(s) 725
DdeI CTNAG 5 cut(s) 879, 1415, 1599, 1611, 1662
DpnI GATC 3 cut(s) 653, 788, 906
DpnII GATC 3 cut(s) 651, 786, 904
DraIII CACNNNGTG 1 cut(s) 1657
DrdI GACNNNNNNGTC 2 cut(s) 1176, 1406
DseDI GACNNNNNNGTC 2 cut(s) 1176, 1406
Eam1104I CTCTTC 4 cut(s) 77, 119, 209, 331
EarI CTCTTC 4 cut(s) 77, 119, 209, 331
Ecl136II GAGCTC 1 cut(s) 1357
Eco130I CCWWGG 3 cut(s) 391, 399, 1441
Eco24I GRGCYC 3 cut(s) 23, 1291, 1359
Eco31I GGTCTC 1 cut(s) 1184
Eco53kI GAGCTC 1 cut(s) 1357
Eco57I CTGAAG 1 cut(s) 893
Eco88I CYCGRG 2 cut(s) 349, 485
Eco91I GGTNACC 1 cut(s) 1472
EcoICRI GAGCTC 1 cut(s) 1357
EcoO109I RGGNCCY 4 cut(s) 396, 465, 1007, 1079
EcoO65I GGTNACC 1 cut(s) 1472
EcoRI GAATTC 1 cut(s) 431
EcoT14I CCWWGG 3 cut(s) 391, 399, 1441
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 3 cut(s) 23, 1291, 1359
ErhI CCWWGG 3 cut(s) 391, 399, 1441
Esp3I CGTCTC 1 cut(s) 654
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 2 cut(s) 1170, 1503
Fnu4HI GCNGC 7 cut(s) 285, 356, 443, 954, 1295, 1392, 1589
FokI GGATG 5 cut(s) 230, 251, 599, 1055, 1074
FriOI GRGCYC 3 cut(s) 23, 1291, 1359
Fsp4HI GCNGC 7 cut(s) 285, 356, 443, 954, 1295, 1392, 1589
FspBI CTAG 5 cut(s) 603, 971, 1034, 1226, 1696
GlaI GCGC 2 cut(s) 957, 1233
GluI GCNGC 7 cut(s) 285, 356, 443, 954, 1295, 1392, 1589
HaeII RGCGCY 2 cut(s) 959, 1235
HaeIII GGCC 9 cut(s) 389, 398, 466, 483, 548, 852, 1009, 1080, 1458
HapII CCGG 3 cut(s) 386, 1030, 1071
HhaI GCGC 2 cut(s) 958, 1234
Hin6I GCGC 2 cut(s) 956, 1232
HinP1I GCGC 2 cut(s) 956, 1232
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 9 cut(s) 141, 225, 574, 825, 841, 875, 892, 976, 1115
HpaII CCGG 3 cut(s) 386, 1030, 1071
HphI GGTGA 7 cut(s) 39, 45, 94, 1060, 1277, 1336, 1466
Hpy166II GTNNAC 2 cut(s) 1244, 1676
Hpy188I TCNGA 9 cut(s) 140, 364, 421, 561, 579, 679, 912, 1055, 1571
Hpy188III TCNNGA 9 cut(s) 12, 36, 611, 703, 765, 794, 845, 1112, 1579
Hpy8I GTNNAC 2 cut(s) 1244, 1676
Hpy99I CGWCG 1 cut(s) 347
HpyCH4III ACNGT 3 cut(s) 134, 370, 1478
HpyF10VI GCNNNNNNNGC 6 cut(s) 395, 404, 637, 868, 1391, 1657
HpyF3I CTNAG 5 cut(s) 879, 1415, 1599, 1611, 1662
HspAI GCGC 2 cut(s) 956, 1232
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Kzo9I GATC 3 cut(s) 651, 786, 904
LmnI GCTCC 4 cut(s) 90, 439, 1229, 1585
Lsp1109I GCAGC 7 cut(s) 271, 342, 454, 965, 1306, 1378, 1575
LweI GCATC 3 cut(s) 577, 1518, 1584
MaeI CTAG 5 cut(s) 603, 971, 1034, 1226, 1696
MaeIII GTNAC 4 cut(s) 799, 1324, 1472, 1622
MalI GATC 3 cut(s) 653, 788, 906
MboI GATC 3 cut(s) 651, 786, 904
MboII GAAGA 8 cut(s) 64, 106, 196, 318, 321, 495, 899, 1553
MflI RGATCY 1 cut(s) 786
MhlI GDGCHC 4 cut(s) 23, 1246, 1291, 1359
MluCI AATT 7 cut(s) 431, 646, 774, 960, 980, 1310, 1318
MlyI GAGTC 2 cut(s) 135, 1124
Mph1103I ATGCAT 1 cut(s) 1198
MroNI GCCGGC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 431
MspI CCGG 3 cut(s) 386, 1030, 1071
Mva1269I GAATGC 1 cut(s) 1378
MwoI GCNNNNNNNGC 6 cut(s) 395, 404, 637, 868, 1391, 1657
NaeI GCCGGC 1 cut(s) 387
NcoI CCATGG 2 cut(s) 391, 1441
NdeII GATC 3 cut(s) 651, 786, 904
NgoMIV GCCGGC 1 cut(s) 385
NlaIV GGNNCC 2 cut(s) 378, 397
NmeAIII GCCGAG 1 cut(s) 1484
NmuCI GTSAC 2 cut(s) 1324, 1472
NsiI ATGCAT 1 cut(s) 1198
NspI RCATGY 2 cut(s) 821, 1672
PagI TCATGA 1 cut(s) 1578
PctI GAATGC 1 cut(s) 1378
PdiI GCCGGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 7 cut(s) 225, 574, 825, 841, 875, 892, 976
PkrI GCNGC 7 cut(s) 286, 357, 444, 955, 1296, 1393, 1590
PleI GAGTC 2 cut(s) 135, 1123
PpsI GAGTC 2 cut(s) 135, 1123
Psp124BI GAGCTC 1 cut(s) 1359
PspEI GGTNACC 1 cut(s) 1472
PspN4I GGNNCC 2 cut(s) 378, 397
PspPI GGNCC 6 cut(s) 388, 396, 465, 1007, 1079, 1456
PsrI GAACNNNNNNTAC 2 cut(s) 1139, 1171
PstI CTGCAG 1 cut(s) 1296
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 786
RsaI GTAC 1 cut(s) 726
RsaNI GTAC 1 cut(s) 725
SacI GAGCTC 1 cut(s) 1359
SatI GCNGC 7 cut(s) 285, 356, 443, 954, 1295, 1392, 1589
Sau3AI GATC 3 cut(s) 651, 786, 904
Sau96I GGNCC 6 cut(s) 388, 396, 465, 1007, 1079, 1456
SchI GAGTC 2 cut(s) 135, 1124
SduI GDGCHC 4 cut(s) 23, 1246, 1291, 1359
SfaNI GCATC 3 cut(s) 577, 1518, 1584
SfcI CTRYAG 1 cut(s) 1292
SfiI GGCCNNNNNGGCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 7 cut(s) 431, 646, 774, 960, 980, 1310, 1318
SsiI CCGC 2 cut(s) 59, 806
SspI AATATT 1 cut(s) 66
SspMI CTAG 5 cut(s) 603, 971, 1034, 1226, 1696
SstI GAGCTC 1 cut(s) 1359
StyI CCWWGG 3 cut(s) 391, 399, 1441
TaaI ACNGT 3 cut(s) 134, 370, 1478
TaqI TCGA 3 cut(s) 342, 493, 687
TasI AATT 7 cut(s) 431, 646, 774, 960, 980, 1310, 1318
TfiI GAWTC 7 cut(s) 225, 574, 825, 841, 875, 892, 976
TscAI CASTG 3 cut(s) 387, 815, 1426
TseFI GTSAC 2 cut(s) 1324, 1472
TseI GCWGC 7 cut(s) 284, 355, 442, 953, 1294, 1391, 1588
Tsp45I GTSAC 2 cut(s) 1324, 1472
TspDTI ATGAA 4 cut(s) 794, 930, 1385, 1492
TspGWI ACGGA 1 cut(s) 1261
TspRI CASTG 3 cut(s) 387, 815, 1426
VneI GTGCAC 1 cut(s) 1242
XapI RAATTY 3 cut(s) 431, 1310, 1318
XceI RCATGY 2 cut(s) 821, 1672
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 5 cut(s) 603, 971, 1034, 1226, 1696
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.