Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Reverse (-)

11080816 .. 11082414

Gene Structure 1599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTATCCCGATTAAATCCGAAGGATCCTGGACAAGTTTTCTCTCGAATTTGATACAAACTGAGCAGAAGTCAGATGCTGATCATATGAAATGCATACCTGTTGCAGTAGAAGGTCCTTACGGACCTGCCACAATGGAATTCCTAAGGTATGACAGCCTACTTCTTGTTGCTGGAGGAATTGGTATAACCCCGTTTCTGAGCATCTTACAGGAACTTGTTGCAGCCCAAAACAGCGGCCGATACAAATTCCTACCTAGGATGCAACTTATATTTGCTGTCAAGAAGGCCCAAGATATATGTCTGCTGAACTCAATTTCACCTCTAATTTTCAACCAGCCAGCTGAAAAGTGCCATCTGAAAGTGAAGGTAGATGTGACTCAAGAAGAGCAGTCTGGTGTCACAGTAAGAGAAGTACTACTAAATGAGTCTTCTCGAGTGCAAACAATAAACTTTGGCATCAAATCTTCAATTTATCCTGTAACTGGACTTGAAAGTCCACTTTGGATGGCTGCCATAGTTGGAATTTCCTTTATCCTGTTTCTCATCTTCCTCATCATTTTCAACCACATTTTCATTCCCTCCCAGAAAAATGCTACCAAAGAAAAGACTCCATCTTCGGTTGCAGATCTGCTTATCATATGTTCTTTCATCACAGTGTTAATGTGCATCATCTTTGTAGCATTTATTATAAAACGGAGAAGACTAAAGCAACAGAGCCCACCAGTTTTCCAAAAAAAAAGGCAAAGCATTGGAAATAAGTCCAACAGAAGCAAGGGATGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

9.49

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_6	PF08030	51 - 137	5.1e-09	Ferric reductase NAD binding domain
NAD_binding_1	PF00175	56 - 138	8e-07	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	21, 34
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	4 cut(s)	49, 140, 248, 525
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	334, 471, 494, 565
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	2 cut(s)	21, 34
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	238, 288
ApeKI	GCWGC	2 cut(s)	224, 512
ApoI	RAATTY	4 cut(s)	49, 140, 248, 525
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	116, 125, 289
AsuHPI	GGTGA	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	116, 125
AvrII	CCTAGG	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	722
BbsI	GAAGAC	2 cut(s)	423, 709
BbvI	GCAGC	2 cut(s)	236, 499
BccI	CCATC	3 cut(s)	363, 502, 622
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	3 cut(s)	225, 238, 513
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	3 cut(s)	226, 239, 514
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	2 cut(s)	116, 125
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	3 cut(s)	116, 125, 289
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 770
BpiI	GAAGAC	2 cut(s)	423, 709
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	490, 725
Bse21I	CCTNAGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	267, 513, 785
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	54, 191
BseNI	ACTGG	2 cut(s)	490, 725
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	236, 499
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	240, 290
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	485
BsnI	GGCC	2 cut(s)	240, 290
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	26, 82, 628
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	240, 290
BspCNI	CTCAG	2 cut(s)	55, 192
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	21, 34
BspQI	GCTCTTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	490, 725
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	26, 82, 628
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	406, 658
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	63, 146, 200
BstF5I	GGATG	3 cut(s)	267, 513, 785
BstKTI	GATC	3 cut(s)	29, 85, 631
BstMBI	GATC	3 cut(s)	26, 82, 628
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	780
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	236, 499
BstV2I	GAAGAC	2 cut(s)	423, 709
BstX2I	RGATCY	2 cut(s)	26, 628
BstYI	RGATCY	2 cut(s)	26, 628
BstZI	CGGCCG	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	240, 290
BtsCI	GGATG	3 cut(s)	267, 513, 785
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	116, 125, 289
Csp6I	GTAC	1 cut(s)	416
CviJI	RGCY	8 cut(s)	159, 227, 240, 290, 340, 344, 512, 720
CviKI_1	RGCY	8 cut(s)	159, 227, 240, 290, 340, 344, 512, 720
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	63, 146, 200
DpnI	GATC	3 cut(s)	28, 84, 630
DpnII	GATC	3 cut(s)	26, 82, 628
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	722
Eco47I	GGWCC	2 cut(s)	116, 125
Eco52I	CGGCCG	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	257
FauNDI	CATATG	2 cut(s)	87, 641
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	225, 238, 513
FokI	GGATG	2 cut(s)	274, 520
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	225, 238, 513
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	225, 238, 513
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	240, 290
HinfI	GANTC	3 cut(s)	379, 428, 610
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	4 cut(s)	22, 76, 201, 360
Hpy188III	TCNNGA	6 cut(s)	10, 46, 283, 383, 435, 786
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	4 cut(s)	17, 107, 280, 361
HpyCH4III	ACNGT	2 cut(s)	406, 658
HpyCH4V	TGCA	7 cut(s)	96, 107, 224, 265, 442, 626, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	780
HpyF3I	CTNAG	3 cut(s)	63, 146, 200
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	26, 82, 628
LguI	GCTCTTC	1 cut(s)	381
Lsp1109I	GCAGC	2 cut(s)	236, 499
LweI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 770
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	376, 400, 481
MalI	GATC	3 cut(s)	28, 84, 630
MboI	GATC	3 cut(s)	26, 82, 628
MboII	GAAGA	6 cut(s)	398, 423, 459, 541, 609, 714
MflI	RGATCY	2 cut(s)	26, 628
MhlI	GDGCHC	1 cut(s)	722
MluCI	AATT	8 cut(s)	49, 140, 180, 248, 315, 327, 471, 525
MlyI	GAGTC	3 cut(s)	373, 437, 604
MmeI	TCCRAC	2 cut(s)	502, 789
MnlI	CCTC	4 cut(s)	170, 333, 563, 592
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	15, 662
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	237, 344
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	780
NdeI	CATATG	2 cut(s)	87, 641
NdeII	GATC	3 cut(s)	26, 82, 628
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	376, 400
NsiI	ATGCAT	1 cut(s)	98
PaeR7I	CTCGAG	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	226, 239, 514
PleI	GAGTC	3 cut(s)	373, 436, 604
PpsI	GAGTC	3 cut(s)	373, 436, 604
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	116, 125, 289
PspPPI	RGGWCCY	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	26, 628
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	15, 662
SatI	GCNGC	3 cut(s)	225, 238, 513
Sau3AI	GATC	3 cut(s)	26, 82, 628
Sau96I	GGNCC	3 cut(s)	116, 125, 289
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	3 cut(s)	373, 437, 604
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	722
SetI	ASST	8 cut(s)	103, 118, 130, 152, 259, 325, 346, 372
SfaNI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 770
Sfr274I	CTCGAG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	116, 125
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	381, 435
SmoI	CTYRAG	2 cut(s)	381, 435
Sse9I	AATT	8 cut(s)	49, 140, 180, 248, 315, 327, 471, 525
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	406, 658
TaqI	TCGA	2 cut(s)	47, 436
TasI	AATT	8 cut(s)	49, 140, 180, 248, 315, 327, 471, 525
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	15, 662
Tru9I	TTAA	2 cut(s)	15, 662
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	2 cut(s)	376, 400
TseI	GCWGC	2 cut(s)	224, 512
Tsp45I	GTSAC	2 cut(s)	376, 400
TspDTI	ATGAA	3 cut(s)	104, 565, 640
TspGWI	ACGGA	2 cut(s)	138, 712
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	116, 125
XapI	RAATTY	4 cut(s)	49, 140, 248, 525
XhoI	CTCGAG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.