RchiOBHm_Chr7g0192671

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004752
Physical Location & Seq
Reverse (-)
11082618 .. 11084913
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17224

Sequence Viewer

Length: 1086 bp
ATGGAAAGAGAGGTCGAAGAGCTCGAGCTGGAGTTTCTGCTTACCCAAGGTCATAAATTCCAAGATTCCTACATATTTCCTCATCAACTATTGGGAATCTCTCACCTTTCTGGTCCAGGCTGCCATAATACATATCCACCCCGTTGGGAAGCATGTGAGGATTGCATCACTAGTGCTTCTTCTTTTTGCAGGCCTCACCTTGATCTCCCAACTGGAGGAGGATTTAAGTGCCTCAAAGTTCTTCACCTGGAAAACGTAGATGTGGATGGACAAGTTGTCGAGTATTTTCTGTCCAACTGTCGTGCCCTTGAAGGGCTGTCCATCACTGGTGCAATTCATTTGCTCACCTTAACAGTCGCAGCTCCCTCTGCACCTTCTTTAAGGTATCTAGTGGTCAAGAACTGTCTTCGGGTCACAAGCATTACCATCTGCAACTCCCACCTTTGTTCCTTCATTTACAAAGGCATGTCTATGCACTTGCAACTTGACAATGTGCCTTCTCTTGTTGAGGTCTGCCTTCATCAAGCCGACTCCAAAACCTCTGACTTTGCCGCTCTTGCCTTCGATCAGCTTTCCTCCCATCTCTTTCAGCTACACACACTCATGCTTGATGTTCAGTTCAACGCACCGTTGTATCTCAGTGCGTTTGCTTGTGCGGTTCCCAAGTTGCCAAACCTCCAGCATTTGGACTTGGTTATTCTAGCTGATGATCTATGGAGCCTTCGTCGATTAGCTGCTTTCCTCCGGGCGTCTCCACACTTGAAGAAACTTGTGCTCCAGCTGCAATTCTACCCAATCAAAGGAGAGTTGTATAATGATGTGCAGTGTCCACATGACCATCTCAGGGTAGTGGAAATTGTAGGGTATCGTGTTTCCAAAAAGGCTACTCAACATCTCATGTTCTTGATCGAGAATGCTGCTGCATTGGAGAAAGTTGTCATTGATCCTGCTTGCCGCTGGCTCCATCATCGCACTGGGGCATACAGGAGTTTTATAGAGGTCAAGGAGGAAGGAGAGGCAAGAGACCATGCTATGCTACAGCTTAAAGAAATAATCCCTCCAACTGTTGAATTTGTATGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

361

Amino Acids

40.66

Weight (kDa)

6.11

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 45 - 135 1.5e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 74 - 328 6e-22 At1g61320/AtMIF1, LRR domain
FBD PF08387 274 - 314 3.6e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AccBSI CCGCTC 1 cut(s) 554
AciI CCGC 3 cut(s) 552, 656, 955
AclWI GGATC 1 cut(s) 938
AcsI RAATTY 2 cut(s) 56, 1070
AcyI GRCGYC 1 cut(s) 749
AfiI CCNNNNNNNGG 5 cut(s) 215, 312, 685, 800, 844
AgsI TTSAA 4 cut(s) 311, 622, 763, 1070
AhdI GACNNNNNGTC 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 2 cut(s) 115, 246
AluBI AGCT 9 cut(s) 22, 28, 362, 571, 592, 704, 734, 781, 1042
AluI AGCT 9 cut(s) 22, 28, 362, 571, 592, 704, 734, 781, 1042
Alw21I GWGCWC 2 cut(s) 24, 777
Alw26I GTCTC 2 cut(s) 756, 1017
AlwI GGATC 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 6 cut(s) 120, 359, 734, 781, 917, 920
ApoI RAATTY 2 cut(s) 56, 1070
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 4 cut(s) 95, 188, 236, 337
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 617, 650
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 2 cut(s) 24, 777
BbvI GCAGC 6 cut(s) 107, 371, 721, 768, 904, 907
BccI CCATC 6 cut(s) 260, 329, 434, 588, 846, 972
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 2 cut(s) 117, 248
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 2 cut(s) 756, 1017
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 3 cut(s) 171, 389, 701
BfmI CTRYAG 1 cut(s) 1037
BisI GCNGC 8 cut(s) 121, 360, 552, 735, 782, 918, 921, 955
BlsI GCNGC 8 cut(s) 122, 361, 553, 736, 783, 919, 922, 956
Bme1390I CCNGG 3 cut(s) 117, 248, 746
Bme18I GGWCC 1 cut(s) 113
BmeRI GACNNNNNGTC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 3 cut(s) 660, 719, 962
BmrFI CCNGG 3 cut(s) 117, 248, 746
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 984
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 4 cut(s) 50, 234, 662, 761
BpuMI CCSGG 1 cut(s) 746
BsaHI GRCGYC 1 cut(s) 749
BsaI GGTCTC 1 cut(s) 1017
BsaJI CCNNGG 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 709, 739, 759, 789
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 312, 685, 800, 844
Bse1I ACTGG 3 cut(s) 217, 331, 979
BseBI CCWGG 2 cut(s) 117, 248
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 5 cut(s) 215, 312, 685, 800, 844
BseMII CTCAG 2 cut(s) 652, 856
BseNI ACTGG 3 cut(s) 217, 331, 979
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 6 cut(s) 107, 371, 721, 768, 904, 907
BsgI GTGCAG 2 cut(s) 354, 842
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 24, 777
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 745
BslI CCNNNNNNNGG 5 cut(s) 215, 312, 685, 800, 844
BsmAI GTCTC 2 cut(s) 756, 1017
BsmBI CGTCTC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 1017
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 24, 307, 777
Bsp143I GATC 5 cut(s) 202, 565, 709, 906, 943
BspACI CCGC 3 cut(s) 552, 656, 955
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 651, 855
BspLI GGNNCC 3 cut(s) 660, 719, 962
BspPI GGATC 1 cut(s) 938
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 1017
BsrBI CCGCTC 1 cut(s) 554
BsrI ACTGG 3 cut(s) 217, 331, 979
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 5 cut(s) 202, 565, 709, 906, 943
BssNI GRCGYC 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 117, 248
Bst4CI ACNGT 5 cut(s) 299, 355, 404, 630, 1066
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 749
BstC8I GCNNGC 3 cut(s) 191, 952, 959
BstDEI CTNAG 2 cut(s) 638, 842
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 5 cut(s) 205, 568, 712, 909, 946
BstMAI GTCTC 2 cut(s) 756, 1017
BstMBI GATC 5 cut(s) 202, 565, 709, 906, 943
BstMWI GCNNNNNNNGC 3 cut(s) 368, 557, 781
BstNI CCWGG 2 cut(s) 117, 248
BstNSI RCATGY 2 cut(s) 156, 469
BstSCI CCNGG 3 cut(s) 115, 246, 744
BstSFI CTRYAG 1 cut(s) 1037
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 6 cut(s) 107, 371, 721, 768, 904, 907
BstV2I GAAGAC 1 cut(s) 398
BstXI CCANNNNNNTGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 953
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 4 cut(s) 324, 646, 830, 972
Cac8I GCNNGC 3 cut(s) 191, 952, 959
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 738
CviAII CATG 6 cut(s) 153, 466, 604, 833, 898, 1028
DdeI CTNAG 2 cut(s) 638, 842
DpnI GATC 5 cut(s) 204, 567, 711, 908, 945
DpnII GATC 5 cut(s) 202, 565, 709, 906, 943
DriI GACNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 1017
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 115, 246
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 6 cut(s) 156, 469, 607, 836, 901, 1031
FatI CATG 6 cut(s) 152, 465, 603, 832, 897, 1027
Fnu4HI GCNGC 8 cut(s) 121, 360, 552, 735, 782, 918, 921, 955
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 8 cut(s) 121, 360, 552, 735, 782, 918, 921, 955
FspBI CTAG 3 cut(s) 171, 389, 701
GluI GCNGC 8 cut(s) 121, 360, 552, 735, 782, 918, 921, 955
GsuI CTGGAG 4 cut(s) 50, 234, 662, 761
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 745
HgaI GACGC 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 6 cut(s) 156, 469, 607, 836, 901, 1031
HinfI GANTC 3 cut(s) 65, 96, 530
HpaII CCGG 1 cut(s) 745
HphI GGTGA 4 cut(s) 95, 188, 236, 337
Hpy166II GTNNAC 1 cut(s) 830
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 3 cut(s) 397, 904, 910
Hpy8I GTNNAC 1 cut(s) 830
Hpy99I CGWCG 1 cut(s) 729
HpyAV CCTTC 8 cut(s) 305, 384, 460, 507, 527, 571, 731, 1004
HpyCH4III ACNGT 5 cut(s) 299, 355, 404, 630, 1066
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 557, 781
HpyF3I CTNAG 2 cut(s) 638, 842
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 6 cut(s) 156, 469, 607, 836, 901, 1031
Kzo9I GATC 5 cut(s) 202, 565, 709, 906, 943
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 4 cut(s) 367, 717, 780, 966
Lsp1109I GCAGC 6 cut(s) 107, 371, 721, 768, 904, 907
LweI GCATC 1 cut(s) 174
MaeI CTAG 3 cut(s) 171, 389, 701
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 412
MalI GATC 5 cut(s) 204, 567, 711, 908, 945
MbiI CCGCTC 1 cut(s) 554
MboI GATC 5 cut(s) 202, 565, 709, 906, 943
MboII GAAGA 5 cut(s) 29, 171, 233, 398, 775
MhlI GDGCHC 3 cut(s) 24, 307, 777
MluCI AATT 5 cut(s) 56, 333, 785, 855, 1070
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 2 cut(s) 318, 1085
MseI TTAA 4 cut(s) 225, 350, 380, 1044
MslI CAYNNNNRTG 2 cut(s) 470, 602
MspA1I CMGCKG 2 cut(s) 781, 957
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 3 cut(s) 117, 248, 746
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 117, 248
MwoI GCNNNNNNNGC 3 cut(s) 368, 557, 781
NciI CCSGG 1 cut(s) 746
NdeII GATC 5 cut(s) 202, 565, 709, 906, 943
NlaIII CATG 6 cut(s) 156, 469, 607, 836, 901, 1031
NlaIV GGNNCC 3 cut(s) 660, 719, 962
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 2 cut(s) 156, 469
PaeR7I CTCGAG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 65, 96
PflMI CCANNNNNTGG 1 cut(s) 685
PkrI GCNGC 8 cut(s) 122, 361, 553, 736, 783, 919, 922, 956
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 115, 246
PspGI CCWGG 2 cut(s) 115, 246
PspN4I GGNNCC 3 cut(s) 660, 719, 962
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 781
RseI CAYNNNNRTG 2 cut(s) 470, 602
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 225, 350, 380, 1044
SatI GCNGC 8 cut(s) 121, 360, 552, 735, 782, 918, 921, 955
Sau3AI GATC 5 cut(s) 202, 565, 709, 906, 943
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 117, 248, 746
SduI GDGCHC 3 cut(s) 24, 307, 777
SfaNI GCATC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 1037
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 470, 602
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 5 cut(s) 56, 333, 785, 855, 1070
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 3 cut(s) 552, 656, 955
SspMI CTAG 3 cut(s) 171, 389, 701
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 115, 246, 744
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 5 cut(s) 299, 355, 404, 630, 1066
TaiI ACGT 1 cut(s) 258
TaqI TCGA 6 cut(s) 15, 24, 279, 564, 727, 909
TasI AATT 5 cut(s) 56, 333, 785, 855, 1070
TauI GCSGC 2 cut(s) 554, 957
TfiI GAWTC 2 cut(s) 65, 96
Tru1I TTAA 4 cut(s) 225, 350, 380, 1044
Tru9I TTAA 4 cut(s) 225, 350, 380, 1044
TscAI CASTG 4 cut(s) 331, 646, 830, 979
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 6 cut(s) 120, 359, 734, 781, 917, 920
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 326, 442, 509
TspRI CASTG 4 cut(s) 331, 646, 830, 979
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 56, 1070
XceI RCATGY 2 cut(s) 156, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 3 cut(s) 171, 389, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.