Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Reverse (-)

10264514 .. 10265702

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTATCCTGATTAAATCCGAAGGATCCTGGACAAGTTCTCTCTCGAATTTGATACAAACTGAGCAGAAGTCAGATGCTGATCATATGAAATGCATACCTGTTGCAGTAGAAGGTCCTTACGGACCTGCCACAATGGAATTCCTAAGGTATGACAGTCTACTTCTTGTTGCTGGAGGAATTGGTATAACCCCATTTCTGAGCATCTTACAGGAACTTGTTGCAGCCCAAAACAGCGGCCGATACAAATTCCTACCTAGGATGCAACTTATATTTGCTGTCAAGAAGGCCCAAGATATATGTCTACTGAACTCAATTTCACCTCTAATTTTCAACCAGCCAGCTGAAAAGTGCCATCTGAAAGTGAAGGTATATGTGACTCAAGAAGAGCAGTCTGGTGTCACAGTAAGAGAAGTACTACTAAATGAGTCTTCTCGAGTGCAGACAATAAACTTTGGCATCAAATATTCAATTTATCCTGTAACTGGACTTGAAAGTCCACTCTGGTTGGCTGCCATAGCTGGAATTTCCTTTATCCTGTTTCTCATCTTCCTCATCATTTTCAACCACATTTTCATTCCCTCCCAGAAAAATGCTACCAAAGAAAAGACTCCATCTTCGGTTGCAGATCTGCTTATCATATGTTCTTTCATCACAGTGTTAATGTGCATCATCTTTGTAGCATTTATTATAAGACGGAGAAGACTAAAGCAACAGAGCCCTCCAGTTTTCCAAAAACAAGGCAAAGCATTGGAAATAAGTCCAACAGAAGCAAGGGATGCTCTTGAGGAACATGAAATCCATTTTGGAGGAAGGCCTAATTTTGAAGATATCTTTGCAAAATTTCCAAATGAGACTGGTGGATCTGATGTTGGTGTCCTGGTCTGTGGACCTGAAGCTATAAAAGAATCAGTGGCATCAATATGCCAGCACAAGTGTGGAGGTTTAAAAGTGGGTGCTAATAACAAGCAGAATGCCAATTTCAGTTTTCACTCTCTCAATTTTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

337

Amino Acids

37.25

Weight (kDa)

8.35

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_6	PF08030	51 - 310	1e-20	Ferric reductase NAD binding domain
NAD_binding_1	PF00175	56 - 144	1.5e-06	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	136
AccI	GTMKAC	2 cut(s)	160, 304
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	3 cut(s)	21, 34, 871
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	334, 471, 494, 565, 827
AjnI	CCWGG	2 cut(s)	29, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AleI	CACNNNNGTG	1 cut(s)	936
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	3 cut(s)	344, 521, 899
AluI	AGCT	3 cut(s)	344, 521, 899
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	3 cut(s)	21, 34, 871
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	3 cut(s)	238, 288, 815
ApeKI	GCWGC	2 cut(s)	224, 512
ApoI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	4 cut(s)	116, 125, 289, 890
AsuHPI	GGTGA	1 cut(s)	312
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	3 cut(s)	116, 125, 890
AvrII	CCTAGG	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	722
BbsI	GAAGAC	2 cut(s)	423, 709
BbvI	GCAGC	2 cut(s)	236, 499
BccI	CCATC	2 cut(s)	363, 622
BciT130I	CCWGG	2 cut(s)	31, 881
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	2 cut(s)	258, 1012
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	3 cut(s)	225, 238, 513
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	3 cut(s)	226, 239, 514
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	2 cut(s)	31, 881
Bme18I	GGWCC	3 cut(s)	116, 125, 890
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	4 cut(s)	116, 125, 289, 890
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	31, 881
BmsI	GCATC	7 cut(s)	67, 213, 252, 468, 678, 769, 926
BpiI	GAAGAC	2 cut(s)	423, 709
BpmI	CTGGAG	2 cut(s)	195, 708
BpuEI	CTTGAG	2 cut(s)	366, 806
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	490, 725, 862
Bse21I	CCTNAGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	31, 881
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	267, 784
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	54, 191
BseNI	ACTGG	3 cut(s)	490, 725, 862
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	236, 499
BsgI	GTGCAG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	240, 290, 817
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	240, 290, 817
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	4 cut(s)	26, 82, 628, 863
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	3 cut(s)	240, 290, 817
BspCNI	CTCAG	2 cut(s)	55, 192
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	3 cut(s)	21, 34, 871
BspQI	GCTCTTC	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	490, 725, 862
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	26, 82, 628, 863
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	31, 881
Bst4CI	ACNGT	3 cut(s)	158, 406, 658
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	342, 929
BstDEI	CTNAG	3 cut(s)	63, 146, 200
BstF5I	GGATG	2 cut(s)	267, 784
BstKTI	GATC	4 cut(s)	29, 85, 631, 866
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	4 cut(s)	26, 82, 628, 863
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 779
BstNI	CCWGG	2 cut(s)	31, 881
BstSCI	CCNGG	2 cut(s)	29, 879
BstV1I	GCAGC	2 cut(s)	236, 499
BstV2I	GAAGAC	2 cut(s)	423, 709
BstX2I	RGATCY	3 cut(s)	26, 628, 863
BstYI	RGATCY	3 cut(s)	26, 628, 863
BstZI	CGGCCG	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	240, 290, 817
BtsCI	GGATG	2 cut(s)	267, 784
BtsIMutI	CAGTG	2 cut(s)	663, 918
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	342, 929
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	116, 125, 289, 890
Csp6I	GTAC	1 cut(s)	416
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	1 cut(s)	794
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	63, 146, 200
DpnI	GATC	4 cut(s)	28, 84, 630, 865
DpnII	GATC	4 cut(s)	26, 82, 628, 863
DraI	TTTAAA	1 cut(s)	948
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	3 cut(s)	116, 125, 890
Eco52I	CGGCCG	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	915
Eco81I	CCTNAGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	29, 879
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	1 cut(s)	797
FatI	CATG	1 cut(s)	793
FauNDI	CATATG	2 cut(s)	87, 641
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	2 cut(s)	160, 304
Fnu4HI	GCNGC	3 cut(s)	225, 238, 513
FokI	GGATG	2 cut(s)	274, 791
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	225, 238, 513
FspBI	CTAG	2 cut(s)	258, 1012
GluI	GCNGC	3 cut(s)	225, 238, 513
GsuI	CTGGAG	2 cut(s)	195, 708
HaeIII	GGCC	3 cut(s)	240, 290, 817
Hin1II	CATG	1 cut(s)	797
HinfI	GANTC	4 cut(s)	379, 428, 610, 908
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	4 cut(s)	161, 305, 500, 890
Hpy188I	TCNGA	5 cut(s)	22, 76, 201, 360, 868
Hpy188III	TCNNGA	6 cut(s)	10, 46, 283, 383, 435, 785
Hpy8I	GTNNAC	4 cut(s)	161, 305, 500, 890
HpyAV	CCTTC	5 cut(s)	17, 107, 280, 361, 807
HpyCH4III	ACNGT	3 cut(s)	158, 406, 658
HpyCH4V	TGCA	9 cut(s)	96, 107, 224, 265, 442, 626, 669, 839, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 779
HpyF3I	CTNAG	3 cut(s)	63, 146, 200
Hsp92II	CATG	1 cut(s)	797
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	26, 82, 628, 863
LguI	GCTCTTC	1 cut(s)	381
Lsp1109I	GCAGC	2 cut(s)	236, 499
LweI	GCATC	7 cut(s)	67, 213, 252, 468, 678, 769, 926
MaeI	CTAG	2 cut(s)	258, 1012
MaeIII	GTNAC	3 cut(s)	376, 400, 481
MalI	GATC	4 cut(s)	28, 84, 630, 865
MboI	GATC	4 cut(s)	26, 82, 628, 863
MboII	GAAGA	6 cut(s)	398, 423, 541, 609, 714, 839
MflI	RGATCY	3 cut(s)	26, 628, 863
MhlI	GDGCHC	1 cut(s)	722
MlyI	GAGTC	3 cut(s)	373, 437, 604
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	8 cut(s)	170, 333, 563, 592, 732, 781, 803, 935
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	3 cut(s)	15, 662, 947
MslI	CAYNNNNRTG	3 cut(s)	656, 922, 936
MspA1I	CMGCKG	2 cut(s)	237, 344
MspR9I	CCNGG	2 cut(s)	31, 881
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	2 cut(s)	31, 881
MwoI	GCNNNNNNNGC	2 cut(s)	518, 779
NdeI	CATATG	2 cut(s)	87, 641
NdeII	GATC	4 cut(s)	26, 82, 628, 863
NlaIII	CATG	1 cut(s)	797
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	376, 400
NsiI	ATGCAT	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	936
PaeR7I	CTCGAG	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	979
PfeI	GAWTC	1 cut(s)	908
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	226, 239, 514
PleI	GAGTC	3 cut(s)	373, 436, 604
PpsI	GAGTC	3 cut(s)	373, 436, 604
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	29, 879
PspGI	CCWGG	2 cut(s)	29, 879
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	4 cut(s)	116, 125, 289, 890
PspPPI	RGGWCCY	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	3 cut(s)	26, 628, 863
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	3 cut(s)	656, 922, 936
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	15, 662, 947
SatI	GCNGC	3 cut(s)	225, 238, 513
Sau3AI	GATC	4 cut(s)	26, 82, 628, 863
Sau96I	GGNCC	4 cut(s)	116, 125, 289, 890
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	3 cut(s)	373, 437, 604
ScrFI	CCNGG	2 cut(s)	31, 881
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	7 cut(s)	67, 213, 252, 468, 678, 769, 926
Sfr274I	CTCGAG	1 cut(s)	435
SinI	GGWCC	3 cut(s)	116, 125, 890
SlaI	CTCGAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	656, 922, 936
SmlI	CTYRAG	3 cut(s)	381, 435, 785
SmoI	CTYRAG	3 cut(s)	381, 435, 785
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	1 cut(s)	237
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	2 cut(s)	258, 1012
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	29, 879
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	158, 406, 658
TaqI	TCGA	2 cut(s)	47, 436
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	3 cut(s)	15, 662, 947
Tru9I	TTAA	3 cut(s)	15, 662, 947
TscAI	CASTG	2 cut(s)	663, 918
TseFI	GTSAC	2 cut(s)	376, 400
TseI	GCWGC	2 cut(s)	224, 512
Tsp45I	GTSAC	2 cut(s)	376, 400
TspDTI	ATGAA	4 cut(s)	104, 565, 640, 810
TspGWI	ACGGA	2 cut(s)	138, 712
TspRI	CASTG	2 cut(s)	663, 918
VpaK11BI	GGWCC	3 cut(s)	116, 125, 890
XapI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	935
XhoI	CTCGAG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	257
XmiI	GTMKAC	2 cut(s)	160, 304
XspI	CTAG	2 cut(s)	258, 1012
ZrmI	AGTACT	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.