Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Forward (+)

10741427 .. 10742412

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGCCTTCTCTTGTTTGAGGTCTGCCTTCATCAAGCCGACCCCGAAACCTCTGACTTTACCGCTCTTGCCTTCAATCAGCTTTCCTCCCATCTTTTTCAGCTACACACACTCGTGCTTGATGTTCAGTTCAACGCACCGTTGCATCTCAGTGCGTTTGCTGGTGCTGTTCCCAAGTTGCCAAACCTCCAGCATTTGGAGTTGGTTATTCTAGGTGATGATCCATGGGGCCTTCGTCGATTAGCTGCTAATTTCCTCCAGGCGTCTGCACACTTGAAACTTGTGCTCCAGCTGCAATTCTACCCAATCAAAGGACAGTTGTACAATGATGTGCATAAAGGATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

116

Amino Acids

13.05

Weight (kDa)

5.91

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	196, 311
AgsI	TTSAA	4 cut(s)	76, 133, 277, 347
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	4 cut(s)	82, 103, 245, 292
AluI	AGCT	4 cut(s)	82, 103, 245, 292
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	245, 292
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	227
BauI	CACGAG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	232, 279
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	2 cut(s)	246, 293
BlsI	GCNGC	2 cut(s)	247, 294
Bme1390I	CCNGG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	3 cut(s)	173, 242, 272
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 311
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	196, 311
BseMII	CTCAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	232, 279
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	196, 311
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	141, 318
BstACI	GRCGYC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	232, 279
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	6 cut(s)	38, 82, 103, 231, 245, 292
CviKI_1	RGCY	6 cut(s)	38, 82, 103, 231, 245, 292
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	228
FaiI	YATR	2 cut(s)	226, 336
FatI	CATG	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	246, 293
Fsp4HI	GCNGC	2 cut(s)	246, 293
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	246, 293
GsuI	CTGGAG	3 cut(s)	173, 242, 272
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	17, 38, 82, 242
HpyCH4III	ACNGT	2 cut(s)	141, 318
HpyCH4V	TGCA	4 cut(s)	145, 269, 295, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	5 cut(s)	147, 203, 245, 272, 302
Lsp1109I	GCAGC	2 cut(s)	232, 279
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	212
MalI	GATC	1 cut(s)	222
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	250, 296
MnlI	CCTC	5 cut(s)	13, 61, 97, 197, 266
MslI	CAYNNNNRTG	2 cut(s)	113, 150
MspA1I	CMGCKG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	247, 294
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	113, 150
SatI	GCNGC	2 cut(s)	246, 293
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	24, 53, 84, 105, 189, 217, 247, 294
SfaNI	GCATC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	113, 150
Sse9I	AATT	2 cut(s)	250, 296
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	141, 318
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	250, 296
TatI	WGTACW	1 cut(s)	321
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	245, 292
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.