Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Forward (+)

59502666 .. 59505515

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAAGAGAGGTCGAAGAGCTCGAACTGGAGTTTCTGCTTACTCAAGGTCATAAATTCCAAGATTCCTACACATTTCCTCATCAACTATTGGGAATCTCTCACCTTTCTGGTCCAGGCTGCCATAATACATATCCACCCCGTTGGAAAAATATTTCATGTGAGGATTGCATCACTAGTGCTTCTTCTTTTGGCAGGCCTCACCTTGATCTCCCAACCGGAGGAGGATTTAAGTGCCTCAAAGTTCTTAACTTGGAAAACGTAGATGTGGATGGGCAAGTTGTCGAGTATTTTCTGTCCAACTGTCGTGCCCTTGAAAGGCTGTCCATCACTGGTGCAACTCATTTGCTCACCTTAACAGTCGCAACTCCCTCTGCACCTTCTTTAAGGTATCTAGTGGTCAAGAACTGTCTTCGGGTCACAAGCATTACCATCTGCAACTCCCACCTTTGTTCCTTCATTTATGAAGGCATGTCTATACACTTGCAACTTGACAATGTGCCTTCTCTTGTTGAGGTCTGCCTTCATCAAGCCGACCCCAAAATCTCTGACTTTGCCGCTCTTGCCTTTGATCAGCTTTCCTCCCATCTCTTTCAGCTACACACACTCATGCTTGATGTTCAGTTCAATGCACCGTTATATCTCAATGCGTTTGCTTGTGCTGTTCCCAAGTTGCCAAACCTCCAGCATTTGGACTTGGTTATTCTAGCTGATGATCCATGGGGCCTTCATCGATTAGCTGCTTTCCTCCGGGCATCTCCACACTTGAAGAAACTTGTGCTCCAGCTGCAGTTCAACCCAATCAAAGGAGAGTTGTACAATGATGTGCAGTGTCCACATGACCATCTCAGGGTAGTGGAAATTGTAGGGTATCGTGCTTCCAAAAAGGCTATTGAACATCTCATGTTCTTGACCGAGAACGCTGCTGGATTGGAGAAAGTTGTCATTGATCCTGCTTGCCGCTGGCTCCATCATCACACTGGAGCGTACAAGAGTCTTTTAGAGGTCAAGGAGGAAGGAGAGGCAAGAGACCATGCTATGCTACAGCTTAAAGGAAAAATCCCTCCTACGGTTGAATTTGTATGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

364

Amino Acids

40.68

Weight (kDa)

6.14

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	69 - 144	1.7e-06	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	77 - 360	2e-24	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccBSI	CCGCTC	1 cut(s)	560
AciI	CCGC	2 cut(s)	558, 961
AclWI	GGATC	2 cut(s)	710, 944
AcsI	RAATTY	2 cut(s)	56, 1076
AfaI	GTAC	2 cut(s)	818, 989
AfiI	CCNNNNNNNGG	6 cut(s)	221, 318, 691, 806, 850, 1069
AgsI	TTSAA	6 cut(s)	317, 628, 769, 796, 896, 1076
AhlI	ACTAGT	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	7 cut(s)	22, 577, 598, 710, 740, 787, 1048
AluI	AGCT	7 cut(s)	22, 577, 598, 710, 740, 787, 1048
Alw21I	GWGCWC	2 cut(s)	24, 783
Alw26I	GTCTC	1 cut(s)	1023
AlwI	GGATC	2 cut(s)	710, 944
AoxI	GGCC	2 cut(s)	197, 724
ApeKI	GCWGC	4 cut(s)	120, 740, 787, 923
ApoI	RAATTY	2 cut(s)	56, 1076
AspS9I	GGNCC	2 cut(s)	113, 724
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	95, 194, 343
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	2 cut(s)	24, 783
BbvI	GCAGC	4 cut(s)	107, 727, 774, 910
BccI	CCATC	6 cut(s)	266, 335, 440, 594, 852, 978
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	1023
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	3 cut(s)	177, 395, 707
BfmI	CTRYAG	2 cut(s)	788, 1043
BisI	GCNGC	6 cut(s)	121, 558, 741, 788, 924, 961
BlsI	GCNGC	6 cut(s)	122, 559, 742, 789, 925, 962
Bme1390I	CCNGG	2 cut(s)	117, 752
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 724
BmiI	GGNNCC	2 cut(s)	725, 968
BmrFI	CCNGG	2 cut(s)	117, 752
BmsI	GCATC	2 cut(s)	180, 764
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	4 cut(s)	50, 668, 767, 1002
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	1023
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	6 cut(s)	221, 318, 691, 806, 850, 1069
Bse1I	ACTGG	3 cut(s)	33, 337, 985
BseBI	CCWGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	6 cut(s)	221, 318, 691, 806, 850, 1069
BseMII	CTCAG	1 cut(s)	862
BseNI	ACTGG	3 cut(s)	33, 337, 985
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	4 cut(s)	107, 727, 774, 910
BsgI	GTGCAG	2 cut(s)	360, 848
BshFI	GGCC	2 cut(s)	199, 726
BshVI	ATCGAT	1 cut(s)	733
BsiHKAI	GWGCWC	2 cut(s)	24, 783
BsiSI	CCGG	2 cut(s)	219, 751
BslI	CCNNNNNNNGG	6 cut(s)	221, 318, 691, 806, 850, 1069
BsmAI	GTCTC	1 cut(s)	1023
BsnI	GGCC	2 cut(s)	199, 726
Bso31I	GGTCTC	1 cut(s)	1023
Bsp1286I	GDGCHC	3 cut(s)	24, 313, 783
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	208, 571, 715, 949
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	2 cut(s)	558, 961
BspANI	GGCC	2 cut(s)	199, 726
BspCNI	CTCAG	1 cut(s)	861
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	725, 968
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	2 cut(s)	710, 944
BspQI	GCTCTTC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	1023
BsrBI	CCGCTC	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	3 cut(s)	33, 337, 985
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	4 cut(s)	208, 571, 715, 949
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	5 cut(s)	305, 361, 410, 636, 1072
Bst6I	CTCTTC	1 cut(s)	12
BstAUI	TGTACA	1 cut(s)	816
BstC8I	GCNNGC	3 cut(s)	197, 958, 965
BstDEI	CTNAG	1 cut(s)	848
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	4 cut(s)	211, 574, 718, 952
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	4 cut(s)	208, 571, 715, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 787
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	115, 750
BstSFI	CTRYAG	2 cut(s)	788, 1043
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	4 cut(s)	107, 727, 774, 910
BstV2I	GAAGAC	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	199, 726
BsuTUI	ATCGAT	1 cut(s)	733
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	330, 836, 978
Cac8I	GCNNGC	3 cut(s)	197, 958, 965
Cfr13I	GGNCC	2 cut(s)	113, 724
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	817, 988
CviAII	CATG	7 cut(s)	159, 472, 610, 720, 839, 904, 1034
CviQI	GTAC	2 cut(s)	817, 988
DdeI	CTNAG	1 cut(s)	848
DpnI	GATC	4 cut(s)	210, 573, 717, 951
DpnII	GATC	4 cut(s)	208, 571, 715, 949
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	719
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	1023
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	7 cut(s)	162, 475, 613, 723, 842, 907, 1037
FatI	CATG	7 cut(s)	158, 471, 609, 719, 838, 903, 1033
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	6 cut(s)	121, 558, 741, 788, 924, 961
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	6 cut(s)	121, 558, 741, 788, 924, 961
FspBI	CTAG	3 cut(s)	177, 395, 707
GluI	GCNGC	6 cut(s)	121, 558, 741, 788, 924, 961
GsuI	CTGGAG	4 cut(s)	50, 668, 767, 1002
HaeIII	GGCC	2 cut(s)	199, 726
HapII	CCGG	2 cut(s)	219, 751
Hin1II	CATG	7 cut(s)	162, 475, 613, 723, 842, 907, 1037
HinfI	GANTC	3 cut(s)	65, 96, 994
HpaII	CCGG	2 cut(s)	219, 751
HphI	GGTGA	3 cut(s)	95, 194, 343
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	2 cut(s)	403, 910
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	7 cut(s)	390, 461, 466, 513, 533, 737, 1010
HpyCH4III	ACNGT	5 cut(s)	305, 361, 410, 636, 1072
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	8 cut(s)	171, 338, 377, 438, 487, 632, 790, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 787
HpyF3I	CTNAG	1 cut(s)	848
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	162, 475, 613, 723, 842, 907, 1037
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	208, 571, 715, 949
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	786, 972, 983
Lsp1109I	GCAGC	4 cut(s)	107, 727, 774, 910
LweI	GCATC	2 cut(s)	180, 764
MaeI	CTAG	3 cut(s)	177, 395, 707
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	4 cut(s)	210, 573, 717, 951
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	4 cut(s)	208, 571, 715, 949
MboII	GAAGA	4 cut(s)	29, 177, 404, 781
MhlI	GDGCHC	3 cut(s)	24, 313, 783
MluCI	AATT	3 cut(s)	56, 861, 1076
MlyI	GAGTC	1 cut(s)	1003
MmeI	TCCRAC	2 cut(s)	125, 324
MseI	TTAA	5 cut(s)	231, 249, 356, 386, 1050
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	787, 963
MspI	CCGG	2 cut(s)	219, 751
MspR9I	CCNGG	2 cut(s)	117, 752
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	563, 787
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	4 cut(s)	208, 571, 715, 949
NlaIII	CATG	7 cut(s)	162, 475, 613, 723, 842, 907, 1037
NlaIV	GGNNCC	2 cut(s)	725, 968
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	65, 96
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	6 cut(s)	122, 559, 742, 789, 925, 962
PleI	GAGTC	1 cut(s)	1002
PpsI	GAGTC	1 cut(s)	1002
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	725, 968
PspPI	GGNCC	2 cut(s)	113, 724
PstI	CTGCAG	1 cut(s)	792
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	2 cut(s)	818, 989
RsaNI	GTAC	2 cut(s)	817, 988
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	231, 249, 356, 386, 1050
SatI	GCNGC	6 cut(s)	121, 558, 741, 788, 924, 961
Sau3AI	GATC	4 cut(s)	208, 571, 715, 949
Sau96I	GGNCC	2 cut(s)	113, 724
SchI	GAGTC	1 cut(s)	1003
ScrFI	CCNGG	2 cut(s)	117, 752
SduI	GDGCHC	3 cut(s)	24, 313, 783
SfaNI	GCATC	2 cut(s)	180, 764
SfcI	CTRYAG	2 cut(s)	788, 1043
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	3 cut(s)	56, 861, 1076
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	558, 961
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	3 cut(s)	177, 395, 707
SstI	GAGCTC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	2 cut(s)	115, 750
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	5 cut(s)	305, 361, 410, 636, 1072
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	15, 24, 285, 733
TaqII	GACCGA	1 cut(s)	929
TasI	AATT	3 cut(s)	56, 861, 1076
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	2 cut(s)	560, 963
TfiI	GAWTC	2 cut(s)	65, 96
Tru1I	TTAA	5 cut(s)	231, 249, 356, 386, 1050
Tru9I	TTAA	5 cut(s)	231, 249, 356, 386, 1050
TscAI	CASTG	3 cut(s)	337, 836, 985
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	120, 740, 787, 923
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	5 cut(s)	147, 448, 480, 515, 719
TspRI	CASTG	3 cut(s)	337, 836, 985
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	56, 1076
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	977
XspI	CTAG	3 cut(s)	177, 395, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.