Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Forward (+)

337802 .. 338235

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTATCGAAATGGTGTTTGGTGACCTGATCCATGACGCCTATATACTTTCGGAGAGCGTCAGGCTTGAGAAATGGAGATATGAGTTTGCGCATTTGTATGGTTTCTTGGGAGGCCACCAGGACTTGACCAGTTTGTTCTCGCTTGAAAACAGGAATTTGTTTCCAGCGGCGGTGCACAGCATGGCCATAGATTCGCCGAGCAATGATGTCTTGAACACCTTGCACGAGCCTGCTGCTGCTGCAGCTGATGATAATGAGACATCAGAGTACCTTTTCCTTCGGTCTGCTACAAACTTTTCAGGGACACCCTTTCTGGCTGTGCGTAGATACTCGAGGGTTTCACCAACGATGGGCCAACCAGTGCTTTCTGGCGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

5.0

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
AciI	CCGC	3 cut(s)	170, 173, 375
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	149, 217
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	3 cut(s)	115, 186, 355
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	4 cut(s)	236, 239, 242, 245
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	35, 336
AvaI	CYCGRG	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	188
BauI	CACGAG	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	223, 226, 229, 257
BccI	CCATC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	6 cut(s)	171, 237, 240, 243, 246, 376
BlsI	GCNGC	6 cut(s)	172, 238, 241, 244, 247, 377
Bme1390I	CCNGG	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	132, 362
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	132, 362
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	223, 226, 229, 257
BshFI	GGCC	3 cut(s)	117, 188, 357
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	117, 188, 357
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	170, 173, 375
BspANI	GGCC	3 cut(s)	117, 188, 357
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	132, 362
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 245
BstNI	CCWGG	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	223, 226, 229, 257
BsuRI	GGCC	3 cut(s)	117, 188, 357
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	2 cut(s)	47, 49
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	35, 184
CviJI	RGCY	7 cut(s)	67, 117, 188, 232, 248, 320, 357
CviKI_1	RGCY	7 cut(s)	67, 117, 188, 232, 248, 320, 357
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	38, 187
FaiI	YATR	7 cut(s)	36, 45, 47, 84, 102, 185, 191
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	34, 183
Fnu4HI	GCNGC	6 cut(s)	171, 237, 240, 243, 246, 376
Fsp4HI	GCNGC	6 cut(s)	171, 237, 240, 243, 246, 376
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	6 cut(s)	171, 237, 240, 243, 246, 376
HaeIII	GGCC	3 cut(s)	117, 188, 357
HgaI	GACGC	2 cut(s)	47, 49
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	38, 187
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	35, 336
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	55, 268
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	178, 226, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 245
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	38, 187
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	30
Lsp1109I	GCAGC	4 cut(s)	223, 226, 229, 257
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	188
MnlI	CCTC	2 cut(s)	107, 330
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	2 cut(s)	170, 248
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	242, 245
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	38, 187
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	23
NsbI	TGCGCA	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	6 cut(s)	172, 238, 241, 244, 247, 377
Psp6I	CCWGG	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	99
SatI	GCNGC	6 cut(s)	171, 237, 240, 243, 246, 376
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	30, 224, 250, 276
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	68, 334
SmoI	CTYRAG	2 cut(s)	68, 334
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	170, 173, 375
StyD4I	CCNGG	1 cut(s)	120
TaqI	TCGA	2 cut(s)	9, 335
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	157
TauI	GCSGC	2 cut(s)	173, 378
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	236, 239, 242, 245
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.