Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Reverse (-)

9665314 .. 9666410

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCTATCCTGATTAAATCCGAAGGATCGTGGACAAGTTTTCTCTCGAATTTGATACAAACTGAGCAGAAGTCAGATGCTGATCATATGAAATGCATACCTGTTGCAGTAGAAGGTCCTTACGGACCTGCCACAATGGAATTCCTAAGGTATGACAGTCTACTTCTTGTTGCTGGAGGAATTGGTATAACCCCGTTTCTGAGCATCTTACAGGAACTTGTTGCAGCCCAAAACAGCGGCCGATACGAATTCCTACCGAGGATGCAACTTATATTTGCTGTCAAGAAGACCCAAGATATATGTCTACTGAACTCAATTTCACCTCTAATTTTCAACCAGCCAGCTGAAAAGTGCCATCTGAAAGTGAAGGTATATGTGACTCAAGAAGAGCAGTCTGGTGTCACAGTAAGAGAAGTACTACTAAATGAGTCTTCTCGAATGCAGATAATAAACTTTGGCATCAAATCTTCAATTTATCCTGTAACTGGACTTGAAAGTCCACTCTGGATGGCTGCCATAGCTGGAATTTCCTTTATCCTGTTTCTCATCTTCCTCATCATTTTCAACCACATTTTCATTCCCTCCCAGAAAAATGCTACCAAAGAAAAGACTCCATCTTCGGTTGCAGATCTGCTTATCATATGTTCTTTCATCACAGTGTTAATGTGCATCATCTTTGTAGCATTTATTATAAAACGGAGAAGACTAAAGCAACAGAGCCCTCCAGTTTTCCAAAAACAAGGCAAAGCATTGGAAATAAGTCCAACAGAAGCAAGGGATGCTCTTGAGGAACATGAAATCCATTTTGGAGGAAGGCCTAATTTTGAAGATATCTTTGCAAAATTTCCAAATGAGACTGGTGGATCTGATGTTGGTGTCCAGGTCTGTGGACCTGAAGCTATGAAAGAATCAGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

306

Amino Acids

34.0

Weight (kDa)

6.24

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_6	PF08030	51 - 305	1.7e-19	Ferric reductase NAD binding domain
NAD_binding_1	PF00175	56 - 151	4.5e-07	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	136
AccI	GTMKAC	2 cut(s)	160, 304
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	34, 871
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	334, 471, 494, 565, 827
AjnI	CCWGG	1 cut(s)	879
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	3 cut(s)	344, 521, 899
AluI	AGCT	3 cut(s)	344, 521, 899
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	34, 871
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	238, 815
ApeKI	GCWGC	2 cut(s)	224, 512
ApoI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspS9I	GGNCC	3 cut(s)	116, 125, 890
AsuHPI	GGTGA	1 cut(s)	312
AvaII	GGWCC	3 cut(s)	116, 125, 890
AxyI	CCTNAGG	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	722
BbsI	GAAGAC	3 cut(s)	293, 423, 709
BbvI	GCAGC	2 cut(s)	236, 499
BccI	CCATC	3 cut(s)	363, 502, 622
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	3 cut(s)	225, 238, 513
BlsI	GCNGC	3 cut(s)	226, 239, 514
BmcAI	AGTACT	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	3 cut(s)	116, 125, 890
BmgT120I	GGNCC	3 cut(s)	116, 125, 890
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 769
BpiI	GAAGAC	3 cut(s)	293, 423, 709
BpmI	CTGGAG	2 cut(s)	195, 708
BpuEI	CTTGAG	2 cut(s)	366, 806
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	490, 725, 862
Bse21I	CCTNAGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	267, 513, 784
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	2 cut(s)	54, 191
BseNI	ACTGG	3 cut(s)	490, 725, 862
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	236, 499
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	240, 817
BsiEI	CGRYCG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	240, 817
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	4 cut(s)	26, 82, 628, 863
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	240, 817
BspCNI	CTCAG	2 cut(s)	55, 192
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	34, 871
BspQI	GCTCTTC	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	490, 725, 862
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	26, 82, 628, 863
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	3 cut(s)	158, 406, 658
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	63, 146, 200
BstF5I	GGATG	3 cut(s)	267, 513, 784
BstKTI	GATC	4 cut(s)	29, 85, 631, 866
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	4 cut(s)	26, 82, 628, 863
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 779
BstNI	CCWGG	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	879
BstV1I	GCAGC	2 cut(s)	236, 499
BstV2I	GAAGAC	3 cut(s)	293, 423, 709
BstX2I	RGATCY	2 cut(s)	628, 863
BstXI	CCANNNNNNTGG	1 cut(s)	887
BstYI	RGATCY	2 cut(s)	628, 863
BstZI	CGGCCG	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	240, 817
BtsCI	GGATG	3 cut(s)	267, 513, 784
BtsIMutI	CAGTG	2 cut(s)	663, 918
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	116, 125, 890
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	794, 918
CviJI	RGCY	9 cut(s)	227, 240, 340, 344, 512, 521, 720, 817, 899
CviKI_1	RGCY	9 cut(s)	227, 240, 340, 344, 512, 521, 720, 817, 899
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	63, 146, 200
DpnI	GATC	4 cut(s)	28, 84, 630, 865
DpnII	GATC	4 cut(s)	26, 82, 628, 863
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	238
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	722
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	3 cut(s)	116, 125, 890
Eco52I	CGGCCG	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	915
Eco81I	CCTNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	140, 248
EcoRII	CCWGG	1 cut(s)	879
EcoRV	GATATC	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	722
FaeI	CATG	2 cut(s)	797, 921
FatI	CATG	2 cut(s)	793, 917
FauNDI	CATATG	2 cut(s)	87, 641
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	2 cut(s)	160, 304
Fnu4HI	GCNGC	3 cut(s)	225, 238, 513
FokI	GGATG	3 cut(s)	274, 520, 791
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	225, 238, 513
GluI	GCNGC	3 cut(s)	225, 238, 513
GsuI	CTGGAG	2 cut(s)	195, 708
HaeIII	GGCC	2 cut(s)	240, 817
Hin1II	CATG	2 cut(s)	797, 921
HinfI	GANTC	4 cut(s)	379, 428, 610, 908
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	5 cut(s)	33, 161, 305, 500, 890
Hpy188I	TCNGA	5 cut(s)	22, 76, 201, 360, 868
Hpy188III	TCNNGA	7 cut(s)	10, 46, 283, 383, 435, 505, 785
Hpy8I	GTNNAC	5 cut(s)	33, 161, 305, 500, 890
HpyAV	CCTTC	4 cut(s)	17, 107, 361, 807
HpyCH4III	ACNGT	3 cut(s)	158, 406, 658
HpyCH4V	TGCA	8 cut(s)	96, 107, 224, 265, 442, 626, 669, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 779
HpyF3I	CTNAG	3 cut(s)	63, 146, 200
Hsp92II	CATG	2 cut(s)	797, 921
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	26, 82, 628, 863
LguI	GCTCTTC	1 cut(s)	381
Lsp1109I	GCAGC	2 cut(s)	236, 499
LweI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 769
MaeIII	GTNAC	3 cut(s)	376, 400, 481
MalI	GATC	4 cut(s)	28, 84, 630, 865
MboI	GATC	4 cut(s)	26, 82, 628, 863
MboII	GAAGA	8 cut(s)	298, 398, 423, 459, 541, 609, 714, 839
MflI	RGATCY	2 cut(s)	628, 863
MhlI	GDGCHC	1 cut(s)	722
MlyI	GAGTC	3 cut(s)	373, 437, 604
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	8 cut(s)	170, 252, 333, 563, 592, 732, 781, 803
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	15, 662
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	2 cut(s)	237, 344
MspR9I	CCNGG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	518, 779
NdeI	CATATG	2 cut(s)	87, 641
NdeII	GATC	4 cut(s)	26, 82, 628, 863
NlaIII	CATG	2 cut(s)	797, 921
NmuCI	GTSAC	2 cut(s)	376, 400
NsiI	ATGCAT	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	908
PkrI	GCNGC	3 cut(s)	226, 239, 514
PleI	GAGTC	3 cut(s)	373, 436, 604
PpsI	GAGTC	3 cut(s)	373, 436, 604
PpuMI	RGGWCCY	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspPI	GGNCC	3 cut(s)	116, 125, 890
PspPPI	RGGWCCY	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	628, 863
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	656
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	15, 662
SatI	GCNGC	3 cut(s)	225, 238, 513
Sau3AI	GATC	4 cut(s)	26, 82, 628, 863
Sau96I	GGNCC	3 cut(s)	116, 125, 890
ScaI	AGTACT	1 cut(s)	417
SchI	GAGTC	3 cut(s)	373, 437, 604
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	722
SfaNI	GCATC	6 cut(s)	67, 213, 252, 468, 678, 769
SinI	GGWCC	3 cut(s)	116, 125, 890
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	381, 785
SmoI	CTYRAG	2 cut(s)	381, 785
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	1 cut(s)	879
TaaI	ACNGT	3 cut(s)	158, 406, 658
TaqI	TCGA	2 cut(s)	47, 436
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	2 cut(s)	15, 662
Tru9I	TTAA	2 cut(s)	15, 662
TscAI	CASTG	2 cut(s)	663, 918
TseFI	GTSAC	2 cut(s)	376, 400
TseI	GCWGC	2 cut(s)	224, 512
Tsp45I	GTSAC	2 cut(s)	376, 400
TspDTI	ATGAA	5 cut(s)	104, 565, 640, 810, 917
TspGWI	ACGGA	2 cut(s)	138, 712
TspRI	CASTG	2 cut(s)	663, 918
VpaK11BI	GGWCC	3 cut(s)	116, 125, 890
XapI	RAATTY	5 cut(s)	49, 140, 248, 525, 842
XmiI	GTMKAC	2 cut(s)	160, 304
ZrmI	AGTACT	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.