Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004752

Physical Location & Seq

Genomic Coordinates Forward (+)

326544 .. 327240

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTCTTCCACTGCCACTACTTCGCCGTCTTCGGCGGCGGACCCGACCCGTTCTGCCCGCCCAACAAGGTCATGATCTACGACGATCGCCAGTCCCGCTGCGTCAGCGAGCTCTTGTTCCGGTCCGAGGTCAAGTCGGTCAGGCTCCGCCGCGACCGCATCGTCGTCGTTGTTCTCCACAAGATCTTCGTCTACGATTTCAACGCTTTGAAGTTGTTGGATTCGATTGTGACCGTGGAAAACCCTAAGGGACTGTGTTCCGCCCGGCGCCAAGCCTCTAATCGACGACTTCTCCCTCACCCTCAACGTCGGCGACTGATGCCTCATCGTTGGATCCAACGGCGCCGGCAAAACCATGATCCTCAGGATTCTCGGAGGCAAGCACATGGTCGACCCCAGCATGGTCCGGGTTCTGGGTGCTCGGCTTTCCACGACACCGCTCTCACCGGCTTCGGCGACCTGTCGTACCTAGGCGGAGAGTGGCGGCGTGACGTGGCGTTTGCTGGTTTCGACGTTCCGATACAGATGGATGTTTCGGCTGATAAATTGATCAACGGGGTAGCTGGGATTGACCCACAAAGGAGAGCTGAGCTGATCAAAGTGTTGGATATTGATCTTTCATGGAGGTTGCATATTCATCTTGGTTATGTAATTTTCGTTTTTGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

223

Amino Acids

25.66

Weight (kDa)

9.91

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	21 - 96	7.5e-06	PROPPIN

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50160 AT5G50160
fragaria_vesca	FvH4_5g06130 FvH4_5g06130 FvH4_5g06130
malus_domestica	MD06G1166400.v1.1
prunus_persica	Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1 Prupe.5G166400_v2.0.a1
pyrus_communis	pycom06g14910
rosa_chinensis	RchiOBHm_Chr7g0192661 RchiOBHm_Chr7g0192671 RchiOBHm_Chr7g0192681
rosa_laevigata	RLG00000004337 RLG00000004363 RLG00000004456
rosa_multiflora	Rmu_sc0002040.1_g000005
rosa_roxburghii	Rroxscaffold_3G00262750
rosa_rugosa	Rorug07G0003700 Rorug07G0003800
rosa_samantha	Rh7AG128600 Rh7AG128800 Rh7BG130200 Rh7BG130300 Rh7CG133400 Rh7CG133500 Rh7CG133600 Rh7CG133700 Rh7DG131100
rosa_wichuraiana	Rw7G011000 Rw7G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	2 cut(s)	267, 342
AccBSI	CCGCTC	1 cut(s)	440
AccI	GTMKAC	2 cut(s)	192, 391
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	3 cut(s)	328, 341, 353
AcyI	GRCGYC	2 cut(s)	268, 343
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	127, 401, 413
AgsI	TTSAA	2 cut(s)	202, 211
AjiI	CACGTC	1 cut(s)	493
AluBI	AGCT	4 cut(s)	112, 563, 587, 592
AluI	AGCT	4 cut(s)	112, 563, 587, 592
Alw21I	GWGCWC	2 cut(s)	114, 422
AlwI	GGATC	3 cut(s)	328, 341, 353
ApeKI	GCWGC	1 cut(s)	99
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspA2I	CCTAGG	1 cut(s)	469
AspLEI	GCGC	2 cut(s)	270, 345
AspS9I	GGNCC	3 cut(s)	41, 123, 404
AsuC2I	CCSGG	2 cut(s)	265, 408
AsuHPI	GGTGA	2 cut(s)	290, 436
AvaII	GGWCC	3 cut(s)	41, 123, 404
AvrII	CCTAGG	1 cut(s)	469
AxyI	CCTNAGG	2 cut(s)	246, 363
BamHI	GGATCC	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	267, 342
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	114, 422
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	2 cut(s)	11, 356
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BclI	TGATCA	2 cut(s)	549, 594
BcnI	CCSGG	2 cut(s)	265, 408
BfaI	CTAG	1 cut(s)	470
BfoI	RGCGCY	2 cut(s)	271, 346
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	4 cut(s)	37, 100, 151, 485
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	4 cut(s)	38, 101, 152, 486
Bme1390I	CCNGG	2 cut(s)	265, 408
Bme18I	GGWCC	3 cut(s)	41, 123, 404
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	41, 123, 404
BmiI	GGNNCC	5 cut(s)	43, 146, 269, 335, 344
BmrFI	CCNGG	2 cut(s)	265, 408
BmsI	GCATC	2 cut(s)	168, 309
BpiI	GAAGAC	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuMI	CCSGG	2 cut(s)	265, 408
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	2 cut(s)	268, 343
BsaJI	CCNNGG	3 cut(s)	126, 234, 469
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 401, 413
Bse118I	RCCGGY	2 cut(s)	345, 446
Bse1I	ACTGG	1 cut(s)	91
Bse21I	CCTNAGG	2 cut(s)	246, 363
Bse8I	GATNNNNATC	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	126, 234, 469
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	3 cut(s)	127, 401, 413
BseMII	CTCAG	2 cut(s)	377, 579
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	2 cut(s)	396, 563
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	2 cut(s)	88, 157
BshNI	GGYRCC	2 cut(s)	267, 342
BsiEI	CGRYCG	2 cut(s)	88, 157
BsiHKAI	GWGCWC	2 cut(s)	114, 422
BsiSI	CCGG	5 cut(s)	121, 265, 346, 407, 447
BslFI	GGGAC	2 cut(s)	79, 264
BslI	CCNNNNNNNGG	3 cut(s)	127, 401, 413
BsmFI	GGGAC	2 cut(s)	79, 264
Bsp1286I	GDGCHC	2 cut(s)	114, 422
Bsp143I	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
Bsp1720I	GCTNAGC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	376, 580
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	5 cut(s)	43, 146, 269, 335, 344
BspPI	GGATC	3 cut(s)	328, 341, 353
BspQI	GCTCTTC	1 cut(s)	11
BspT107I	GGYRCC	2 cut(s)	267, 342
BsrBI	CCGCTC	1 cut(s)	440
BsrFI	RCCGGY	2 cut(s)	345, 446
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	2 cut(s)	345, 446
BssECI	CCNNGG	3 cut(s)	126, 234, 469
BssMI	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
BssNI	GRCGYC	2 cut(s)	268, 343
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	235, 255
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	268, 343
BstC8I	GCNNGC	4 cut(s)	59, 110, 347, 381
BstDEI	CTNAG	3 cut(s)	246, 363, 588
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	2 cut(s)	271, 346
BstHHI	GCGC	2 cut(s)	270, 345
BstKTI	GATC	8 cut(s)	78, 88, 186, 336, 361, 552, 597, 616
BstMBI	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
BstMCI	CGRYCG	2 cut(s)	88, 157
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 156, 319
BstSCI	CCNGG	2 cut(s)	263, 406
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	183, 333
BstYI	RGATCY	2 cut(s)	183, 333
Bsu36I	CCTNAGG	2 cut(s)	246, 363
BtgI	CCRYGG	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	4 cut(s)	59, 110, 347, 381
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	2 cut(s)	270, 345
Cfr10I	RCCGGY	2 cut(s)	345, 446
Cfr13I	GGNCC	3 cut(s)	41, 123, 404
CpoI	CGGWCCG	1 cut(s)	123
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	466
CspI	CGGWCCG	1 cut(s)	123
CviAII	CATG	5 cut(s)	73, 356, 386, 401, 621
CviJI	RGCY	9 cut(s)	112, 145, 275, 425, 450, 539, 563, 587, 592
CviKI_1	RGCY	9 cut(s)	112, 145, 275, 425, 450, 539, 563, 587, 592
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	3 cut(s)	246, 363, 588
DinI	GGCGCC	2 cut(s)	269, 344
DpnI	GATC	8 cut(s)	77, 87, 185, 335, 360, 551, 596, 615
DpnII	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EciI	GGCGGA	4 cut(s)	54, 137, 250, 489
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	3 cut(s)	41, 123, 404
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	2 cut(s)	246, 363
EcoICRI	GAGCTC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	114
EgeI	GGCGCC	2 cut(s)	269, 344
EheI	GGCGCC	2 cut(s)	269, 344
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	5 cut(s)	76, 359, 389, 404, 624
FaiI	YATR	7 cut(s)	74, 357, 387, 402, 622, 633, 648
FaqI	GGGAC	2 cut(s)	79, 264
FatI	CATG	5 cut(s)	72, 355, 385, 400, 620
FauI	CCCGC	2 cut(s)	66, 104
FbaI	TGATCA	2 cut(s)	549, 594
FblI	GTMKAC	2 cut(s)	192, 391
Fnu4HI	GCNGC	4 cut(s)	37, 100, 151, 485
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	37, 100, 151, 485
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	2 cut(s)	269, 344
GluI	GCNGC	4 cut(s)	37, 100, 151, 485
GsaI	CCCAGC	2 cut(s)	400, 567
HaeII	RGCGCY	2 cut(s)	271, 346
HapII	CCGG	5 cut(s)	121, 265, 346, 407, 447
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	270, 345
Hin1I	GRCGYC	2 cut(s)	268, 343
Hin1II	CATG	5 cut(s)	76, 359, 389, 404, 624
Hin6I	GCGC	2 cut(s)	268, 343
HinP1I	GCGC	2 cut(s)	268, 343
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	2 cut(s)	221, 368
HpaII	CCGG	5 cut(s)	121, 265, 346, 407, 447
HphI	GGTGA	2 cut(s)	290, 436
Hpy166II	GTNNAC	2 cut(s)	193, 392
Hpy188I	TCNGA	3 cut(s)	127, 375, 519
Hpy188III	TCNNGA	2 cut(s)	73, 365
Hpy8I	GTNNAC	2 cut(s)	193, 392
Hpy99I	CGWCG	6 cut(s)	86, 167, 170, 288, 312, 515
HpyCH4III	ACNGT	2 cut(s)	235, 255
HpyCH4IV	ACGT	3 cut(s)	307, 492, 513
HpyCH4V	TGCA	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 156, 319
HpyF3I	CTNAG	3 cut(s)	246, 363, 588
HpySE526I	ACGT	3 cut(s)	307, 492, 513
Hsp92I	GRCGYC	2 cut(s)	268, 343
Hsp92II	CATG	5 cut(s)	76, 359, 389, 404, 624
HspAI	GCGC	2 cut(s)	268, 343
KasI	GGCGCC	2 cut(s)	267, 342
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Ksp22I	TGATCA	2 cut(s)	549, 594
Kzo9I	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	168, 309
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	3 cut(s)	307, 492, 513
MaeIII	GTNAC	2 cut(s)	229, 488
MalI	GATC	8 cut(s)	77, 87, 185, 335, 360, 551, 596, 615
MbiI	CCGCTC	1 cut(s)	440
MboI	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
MboII	GAAGA	2 cut(s)	22, 178
MflI	RGATCY	2 cut(s)	183, 333
MhlI	GDGCHC	2 cut(s)	114, 422
MluCI	AATT	2 cut(s)	545, 651
Mly113I	GGCGCC	2 cut(s)	268, 343
MmeI	TCCRAC	4 cut(s)	198, 311, 361, 585
MnlI	CCTC	8 cut(s)	121, 286, 306, 312, 333, 369, 372, 618
MroNI	GCCGGC	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	5 cut(s)	121, 265, 346, 407, 447
MspR9I	CCNGG	2 cut(s)	265, 408
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 156, 319
NaeI	GCCGGC	1 cut(s)	347
NarI	GGCGCC	2 cut(s)	268, 343
NciI	CCSGG	2 cut(s)	265, 408
NdeII	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
NgoMIV	GCCGGC	1 cut(s)	345
NlaIII	CATG	5 cut(s)	76, 359, 389, 404, 624
NlaIV	GGNNCC	5 cut(s)	43, 146, 269, 335, 344
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	2 cut(s)	229, 488
PagI	TCATGA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	221, 368
PkrI	GCNGC	4 cut(s)	38, 101, 152, 486
Ple19I	CGATCG	1 cut(s)	88
PluTI	GGCGCC	2 cut(s)	271, 346
Psp124BI	GAGCTC	1 cut(s)	114
PspFI	CCCAGC	2 cut(s)	396, 563
PspN4I	GGNNCC	5 cut(s)	43, 146, 269, 335, 344
PspPI	GGNCC	3 cut(s)	41, 123, 404
PsuI	RGATCY	2 cut(s)	183, 333
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
Rsr2I	CGGWCCG	1 cut(s)	123
RsrII	CGGWCCG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	4 cut(s)	37, 100, 151, 485
Sau3AI	GATC	8 cut(s)	75, 85, 183, 333, 358, 549, 594, 613
Sau96I	GGNCC	3 cut(s)	41, 123, 404
ScrFI	CCNGG	2 cut(s)	265, 408
SduI	GDGCHC	2 cut(s)	114, 422
SfaNI	GCATC	2 cut(s)	168, 309
SfoI	GGCGCC	2 cut(s)	269, 344
SinI	GGWCC	3 cut(s)	41, 123, 404
Sse9I	AATT	2 cut(s)	545, 651
SspDI	GGCGCC	2 cut(s)	267, 342
SspMI	CTAG	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	263, 406
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	235, 255
TaiI	ACGT	3 cut(s)	310, 495, 516
TaqI	TCGA	4 cut(s)	224, 283, 391, 510
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	545, 651
TauI	GCSGC	3 cut(s)	39, 153, 487
TfiI	GAWTC	2 cut(s)	221, 368
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	229, 488
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	2 cut(s)	229, 488
TspDTI	ATGAA	2 cut(s)	609, 626
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	3 cut(s)	41, 123, 404
XmaJI	CCTAGG	1 cut(s)	469
XmiI	GTMKAC	2 cut(s)	192, 391
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.