RchiOBHm_Chr7g0194941

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010274
Physical Location & Seq
Reverse (-)
12916833 .. 12920112
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17433

Sequence Viewer

Length: 1830 bp
ATGGAGACCCAACTGGTGGACCTCTGCTTAAAAGCGGCGTGTGAAAGCAGAGACAGCGTCGAGAAATGGCGGAGGCAGCGGCGGAGTCTGGAGCACTTGCCTTCTCAGCTCGCCGACGCTCTCCTCCGTCGCCTCATCTCTCGTTACCTTCTCTTCCCTTCGTTGCTCGAGGTGTTCAAACACAGTGCAGAGGAGATTGATCTGAGAGGCGACAACAACGTTGACGCCGAATGGTTTGCATACATTGGAGCATTTCGTCATCTCCGAAGTTTGAATGTCTCTGGCTGCCGTAAACTCACAAGCTCAGCTCTTTGGGCTGTAGCAGGGATGAGGAGTTTAAGGGAGATGGATCTTTCGAGATGCTCCAAGGTTAATGATGCTGGCATTAGGCATCTTTCATCTGTTACAACTCTGGAAAAGTTATGGATTTCGGAGACGGGGGTGTCTGCTAAAGGGGTTATGCTTCTCTCTTCGCTTGGAAACTTGTCTGTTCTCGACTTGGGTGGTTTGCCTGTCACTGATCAAGCACTCAGTTCTCTCCAGGTACTTACTAAACTCCAGTATCTTGACCTTTGGGGGAGTAACATATCTGACAAGGGTGCTGCTCTTCTTCATATGTTCCCTAGGTTGAGTTTCCTCAATCTAGCTTGGACCAGCGTCACAAAGTTGCCAAATTGGTTAACCCTTGAATGCTTAAACATGAGTAACTGTACAATAAATCTACTTGAAGGAGATAATGGTAAAGCTCCTTTAGTCAAGCTTATTGTTTCTGGAGCTACATTTGGAGAAGAGGTTGCTGATTTCCATTATATAGAAACAACCCTTTTAACCTTTTTGGATCTTTCCAAGTCTACAATTCTAGACTTCAGCTTCTTATCTCATCTAAATGCTCTGGAACACTTGGATCTCAGCTCTACTGTGATAGGAGATGATTCGCTTCAACTTATTGCATGTATTGGAGTGAATTTGAAATATCTGAATCTTAACAACACCAAAGTAAGCTCTGCAGGAGTTGGAAATTTAACAGGGCATGTACCTAATCTTCAGGTTTTGTCTATATCACATACATCAGTAGATGATGTTACCATATCTTACATTGGCATGATGCCTTCTCTGAAGGTTATTGACCTGAGCAATACCAACATTAAAGGTGTCATTTACCAGGCAGAGACTGTGCCTGTGCCTGTGCGTGAGCCTGAGCCTGAGCCTGAGCCTGAGCATGAGCATGAGCCTGAGTCAGTTTCAGTCCTCTCAATGTCAGCACTTCAAAGTCTCAGGCATCTGGAAAGGTTGAATTTGGCAGATACACAAGTTATGGATGCAGCTCTATACCCTTTGACAAGCTTCCCAAAGTTAAGCCATTTATCTCTTAAAAGTGCTTCTCTTACAGACATCTCCCTTAACTACGTGTCATCCATATCAAAGCTGACAAATGTCTGCATTCATGATGGTGTTCTGACAAACTCTGGGCTCAATTCATTCAAACCCCCAGCAACTCTTAGAATGATGGACCTGAGGGGTTGTTGGCTCTTAACTGAGGATGTTATCACATCCTTCTCTAAAACTCACCCCCAGATTGAAGTATGGCATGATCTTGTTCACATCTCACGATCGAACCAGACTGTTTCTAATACTGCACCTTCTTCAAGATCAACTTTGAGGACTTCACAAGTGAAGAAGAAGCATGAAAGTATTCCCATGTTGGAATGTTTTTTAGATCAAAGATTGAAGTATAGCAGAGAAGAGCTCCTTTCCATGCAGTTCTCGTCTGTTTCCCTTGCAGCTTCTATTGATAGCGGCATTGGAATATGCAACACACAATCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6 LRR_8

Protein Analysis

609

Amino Acids

67.27

Weight (kDa)

5.89

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 82 - 241 2.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 851
AciI CCGC 5 cut(s) 35, 70, 79, 82, 1797
AclI AACGTT 1 cut(s) 219
AclWI GGATC 3 cut(s) 357, 846, 912
AcsI RAATTY 3 cut(s) 964, 1018, 1294
AcuI CTGAAG 3 cut(s) 850, 1028, 1136
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 546, 712, 1035
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 1407
AjnI CCWGG 2 cut(s) 540, 1161
Alw21I GWGCWC 2 cut(s) 96, 1749
Alw26I GTCTC 5 cut(s) 45, 283, 428, 1163, 1277
AlwI GGATC 3 cut(s) 357, 846, 912
AlwNI CAGNNNCTG 1 cut(s) 1172
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 76, 285, 602, 1322, 1781
ApoI RAATTY 3 cut(s) 964, 1018, 1294
Asp700I GAANNNNTTC 1 cut(s) 1692
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 19, 651, 1510
AsuHPI GGTGA 1 cut(s) 1559
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 19, 651, 1510
AvrII CCTAGG 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 1514
BaeI ACNNNNGTAYC 4 cut(s) 545, 578, 1296, 1329
BanII GRGCYC 2 cut(s) 1473, 1749
BarI GAAGNNNNNNTAC 2 cut(s) 1026, 1058
Bbv12I GWGCWC 2 cut(s) 96, 1749
BbvI GCAGC 5 cut(s) 88, 272, 589, 1334, 1793
BccI CCATC 3 cut(s) 340, 1442, 1501
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 542, 1163
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 5 cut(s) 45, 283, 428, 1163, 1277
BfaI CTAG 3 cut(s) 624, 644, 860
BfmI CTRYAG 2 cut(s) 318, 1005
BisI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1323, 1782, 1798
BlnI CCTAGG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 8 cut(s) 37, 78, 81, 287, 604, 1324, 1783, 1799
Bme1390I CCNGG 2 cut(s) 542, 1163
Bme18I GGWCC 3 cut(s) 19, 651, 1510
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 19, 651, 1510
BmrFI CCNGG 2 cut(s) 542, 1163
BmsI GCATC 6 cut(s) 350, 367, 400, 1095, 1288, 1309
BoxI GACNNNNGTC 2 cut(s) 656, 1433
BplI GAGNNNNNCTC 2 cut(s) 1731, 1763
BpmI CTGGAG 4 cut(s) 110, 524, 542, 792
Bpu10I CCTNAGC 5 cut(s) 1130, 1197, 1203, 1209, 1215
Bpu1102I GCTNAGC 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 1408
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 366, 623
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 18, 559
Bse21I CCTNAGG 1 cut(s) 1514
BseBI CCWGG 2 cut(s) 542, 1163
BseDI CCNNGG 2 cut(s) 366, 623
BseGI GGATG 5 cut(s) 333, 1324, 1412, 1546, 1550
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 18, 559
BseRI GAGGAG 3 cut(s) 113, 206, 346
BseXI GCAGC 5 cut(s) 88, 272, 589, 1334, 1793
BseYI CCCAGC 1 cut(s) 1489
BsgI GTGCAG 2 cut(s) 207, 1620
Bsh1285I CGRYCG 1 cut(s) 1613
BsiEI CGRYCG 1 cut(s) 1613
BsiHKAI GWGCWC 2 cut(s) 96, 1749
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1277
BsmBI CGTCTC 1 cut(s) 428
BsmI GAATGC 2 cut(s) 695, 1440
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 96, 1473, 1749
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 5 cut(s) 35, 70, 79, 82, 1797
BspHI TCATGA 1 cut(s) 1444
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 3 cut(s) 357, 846, 912
BspQI GCTCTTC 2 cut(s) 612, 1737
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 18, 559
BssECI CCNNGG 2 cut(s) 366, 623
BssMI GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 366, 623
Bst2UI CCWGG 2 cut(s) 542, 1163
Bst4CI ACNGT 5 cut(s) 185, 710, 919, 1174, 1624
Bst6I CTCTTC 5 cut(s) 158, 475, 612, 783, 1737
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1408
BstC8I GCNNGC 2 cut(s) 111, 382
BstF5I GGATG 5 cut(s) 333, 1324, 1412, 1546, 1550
BstKTI GATC 9 cut(s) 202, 352, 523, 841, 907, 1594, 1613, 1652, 1720
BstMAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1277
BstMBI GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
BstMCI CGRYCG 1 cut(s) 1613
BstMWI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
BstNI CCWGG 2 cut(s) 542, 1163
BstNSI RCATGY 2 cut(s) 954, 1034
BstPAI GACNNNNGTC 2 cut(s) 656, 1433
BstSCI CCNGG 2 cut(s) 540, 1161
BstSFI CTRYAG 2 cut(s) 318, 1005
BstV1I GCAGC 5 cut(s) 88, 272, 589, 1334, 1793
BstX2I RGATCY 3 cut(s) 349, 838, 904
BstYI RGATCY 3 cut(s) 349, 838, 904
Bsu36I CCTNAGG 1 cut(s) 1514
BtsCI GGATG 5 cut(s) 333, 1324, 1412, 1546, 1550
BtsIMutI CAGTG 2 cut(s) 190, 516
Cac8I GCNNGC 2 cut(s) 111, 382
CaiI CAGNNNCTG 1 cut(s) 1172
CciI TCATGA 1 cut(s) 1444
Cfr13I GGNCC 3 cut(s) 19, 651, 1510
CseI GACGC 4 cut(s) 46, 125, 233, 646
Csp6I GTAC 3 cut(s) 545, 711, 1034
CviQI GTAC 3 cut(s) 545, 711, 1034
DpnI GATC 9 cut(s) 201, 351, 522, 840, 906, 1593, 1612, 1651, 1719
DpnII GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 158, 475, 612, 783, 1737
EarI CTCTTC 5 cut(s) 158, 475, 612, 783, 1737
EciI GGCGGA 2 cut(s) 85, 97
Ecl136II GAGCTC 1 cut(s) 1747
Eco130I CCWWGG 2 cut(s) 366, 623
Eco24I GRGCYC 2 cut(s) 1473, 1749
Eco47I GGWCC 3 cut(s) 19, 651, 1510
Eco53kI GAGCTC 1 cut(s) 1747
Eco57I CTGAAG 3 cut(s) 850, 1028, 1136
Eco81I CCTNAGG 1 cut(s) 1514
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 1747
EcoRII CCWGG 2 cut(s) 540, 1161
EcoT14I CCWWGG 2 cut(s) 366, 623
EcoT38I GRGCYC 2 cut(s) 1473, 1749
ErhI CCWWGG 2 cut(s) 366, 623
Esp3I CGTCTC 1 cut(s) 428
FalI AAGNNNNNCTT 4 cut(s) 1639, 1671, 1734, 1766
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1323, 1782, 1798
FokI GGATG 5 cut(s) 340, 1331, 1399, 1537, 1553
FriOI GRGCYC 2 cut(s) 1473, 1749
Fsp4HI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1323, 1782, 1798
FspBI CTAG 3 cut(s) 624, 644, 860
GluI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1323, 1782, 1798
GsaI CCCAGC 1 cut(s) 1493
GsuI CTGGAG 4 cut(s) 110, 524, 542, 792
HgaI GACGC 4 cut(s) 46, 125, 233, 646
Hin1I GRCGYC 1 cut(s) 225
HincII GTYRAC 2 cut(s) 223, 681
HindII GTYRAC 2 cut(s) 223, 681
HindIII AAGCTT 2 cut(s) 758, 1342
HinfI GANTC 4 cut(s) 85, 932, 979, 1235
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 1 cut(s) 1559
Hpy166II GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1600
Hpy188I TCNGA 8 cut(s) 204, 266, 433, 592, 978, 1116, 1458, 1825
Hpy8I GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1600
Hpy99I CGWCG 3 cut(s) 62, 119, 132
HpyAV CCTTC 8 cut(s) 111, 158, 168, 722, 1111, 1119, 1564, 1650
HpyCH4III ACNGT 5 cut(s) 185, 710, 919, 1174, 1624
HpyCH4IV ACGT 2 cut(s) 219, 1407
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
HpySE526I ACGT 2 cut(s) 219, 1407
Hsp92I GRCGYC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
LguI GCTCTTC 2 cut(s) 612, 1737
LmnI GCTCC 6 cut(s) 91, 248, 368, 751, 773, 1752
Lsp1109I GCAGC 5 cut(s) 88, 272, 589, 1334, 1793
LweI GCATC 6 cut(s) 350, 367, 400, 1095, 1288, 1309
MaeI CTAG 3 cut(s) 624, 644, 860
MaeII ACGT 2 cut(s) 219, 1407
MaeIII GTNAC 7 cut(s) 143, 403, 514, 581, 658, 704, 1081
MalI GATC 9 cut(s) 201, 351, 522, 840, 906, 1593, 1612, 1651, 1719
MboI GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
MflI RGATCY 3 cut(s) 349, 838, 904
MhlI GDGCHC 3 cut(s) 96, 1473, 1749
MluCI AATT 6 cut(s) 673, 855, 964, 1018, 1294, 1474
MlyI GAGTC 2 cut(s) 94, 1244
MmeI TCCRAC 2 cut(s) 994, 1683
MroXI GAANNNNTTC 1 cut(s) 1692
MslI CAYNNNNRTG 4 cut(s) 885, 1100, 1224, 1449
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 542, 1163
Mva1269I GAATGC 2 cut(s) 695, 1440
MvaI CCWGG 2 cut(s) 542, 1163
MwoI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
NdeI CATATG 1 cut(s) 615
NdeII GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
NmuCI GTSAC 2 cut(s) 514, 658
NspI RCATGY 2 cut(s) 954, 1034
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 1444
PciSI GCTCTTC 2 cut(s) 612, 1737
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 262
PctI GAATGC 2 cut(s) 695, 1440
PdmI GAANNNNTTC 1 cut(s) 1692
PfeI GAWTC 2 cut(s) 932, 979
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 8 cut(s) 37, 78, 81, 287, 604, 1324, 1783, 1799
Ple19I CGATCG 1 cut(s) 1613
PleI GAGTC 2 cut(s) 93, 1243
PpsI GAGTC 2 cut(s) 93, 1243
Ppu21I YACGTR 1 cut(s) 1408
PshAI GACNNNNGTC 2 cut(s) 656, 1433
Psp124BI GAGCTC 1 cut(s) 1749
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 540, 1161
PspFI CCCAGC 1 cut(s) 1489
PspGI CCWGG 2 cut(s) 540, 1161
PspPI GGNCC 3 cut(s) 19, 651, 1510
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 3 cut(s) 349, 838, 904
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 1613
RsaI GTAC 3 cut(s) 546, 712, 1035
RsaNI GTAC 3 cut(s) 545, 711, 1034
RseI CAYNNNNRTG 4 cut(s) 885, 1100, 1224, 1449
SacI GAGCTC 1 cut(s) 1749
SapI GCTCTTC 2 cut(s) 612, 1737
SatI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1323, 1782, 1798
Sau3AI GATC 9 cut(s) 199, 349, 520, 838, 904, 1591, 1610, 1649, 1717
Sau96I GGNCC 3 cut(s) 19, 651, 1510
SchI GAGTC 2 cut(s) 94, 1244
ScrFI CCNGG 2 cut(s) 542, 1163
SduI GDGCHC 3 cut(s) 96, 1473, 1749
SfaNI GCATC 6 cut(s) 350, 367, 400, 1095, 1288, 1309
SfcI CTRYAG 2 cut(s) 318, 1005
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 19, 651, 1510
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 4 cut(s) 885, 1100, 1224, 1449
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 6 cut(s) 673, 855, 964, 1018, 1294, 1474
SsiI CCGC 5 cut(s) 35, 70, 79, 82, 1797
SspMI CTAG 3 cut(s) 624, 644, 860
SstI GAGCTC 1 cut(s) 1749
StyD4I CCNGG 2 cut(s) 540, 1161
StyI CCWWGG 2 cut(s) 366, 623
TaaI ACNGT 5 cut(s) 185, 710, 919, 1174, 1624
TaiI ACGT 2 cut(s) 222, 1410
TaqI TCGA 5 cut(s) 60, 168, 356, 495, 1613
TasI AATT 6 cut(s) 673, 855, 964, 1018, 1294, 1474
TatI WGTACW 1 cut(s) 710
TauI GCSGC 3 cut(s) 38, 82, 1800
TfiI GAWTC 2 cut(s) 932, 979
TscAI CASTG 2 cut(s) 190, 523
TseFI GTSAC 2 cut(s) 514, 658
TseI GCWGC 5 cut(s) 76, 285, 602, 1322, 1781
Tsp45I GTSAC 2 cut(s) 514, 658
TspDTI ATGAA 5 cut(s) 387, 602, 1433, 1467, 1701
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 190, 523
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 19, 651, 1510
XapI RAATTY 3 cut(s) 964, 1018, 1294
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 954, 1034
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 1692
XspI CTAG 3 cut(s) 624, 644, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.