Rmu_sc0008218.1_g000004

Leucine-rich repeats, outliers

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008218.1
Physical Location & Seq
Reverse (-)
12848 .. 15661
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008218.1_g000004.1.cds

Sequence Viewer

Length: 1866 bp
atggagacccaactggtggagctctgcttacaagcggcgtgtgaaagcagagacagcgtcgagaaatggcggaggcagcggcggagtctggagcacttgccttctcagctcgccgacgctctcctccgtcgcctcatctctcgtcgccttctcttcccttcgttgctcgaggtgttcaaacacagtgcagaggagattgatctgagaggcgacaacaacgtggacgccgaatggtttgcatacattggagcatttcgtcatctccgaagtttgaatgtctctggctgccgtaaactcacaagctcagctctttgggctgtagcagggatgaggagtttaagggagatggatctttcgagatgctccaaggttaatgatgctggcattaggcatctttcatctgttacaactttggaaaagttatggatttcggagacgggggtgtctgctaaaggggttatgcttctctcttcgcttggaaacttgtctgttcttgacttgggtggtttgcctgtcactgatcaagcactcagttctctccaggtacttactaaactccagtatcttgacctttgggggagtaacatatctgacaagggtgctgctcttcttcatatgttccctaggttgagtttcctcaatctagcttggaccagcgtcacaaagttgccaaattggttaacccttgaatgcttaaacatgagtaactgtacaataaatctacttgaaggacataatggtaaagctcctttagtcaagcttattgtttctggagctacatttggagaagaggttgctgatttccattatgtagaaacaacccttttaacctttttggatctttccaagtctacaattctagacttcagcttcttatctcatctaaatgctctggaacacttggatctcagctctactgtgataggagatgattcgcttcaacttattgcatgtgttggagtgaatttgaaatatctgaatcttaacaacaccaaagtaagctctgcaggagttggaaatttaacagggcgtgtacctaatcttcaggttttgtctatatcacatacatcagtagatgatgtaaccatatcttacattggcatgatgccttctctgaaggttattgacctgagcaataccaacattaaaggtgtcatttaccaggcagagactatgcctgtgcgtgagcctgagcctgagcctgagcctgagcctgagcatgagcatgagcatgagccagagccagagcctgagcatgagcatgagcctgagtcagtttcagtcctctcaatgtcagcacttcaaagtctcaggcatctggaaaggttgaatttggcagatacacaagttatggatgcagctctataccctttgacaagcttcccaaagttaagccatttatctcttaaaagtgcttctcttacagacatctcccttaactacgtgtcatccatatcaaagctgacaaatgtctgcattcatgatggtgttctgacaaactctgggctcaattcattcaaacccccagcaactcttagaatgatggacctgaggggttgttggctcttaactgaggatgctatcacatccttctctaaaactcacccccagattgaagtatggcatgatcttgttcacatctcacgatcgaaccagactgtttgtaatactgcaccttcttcaagatcaactttgaggacttcacaagtgaagaagaagcatgaaagtattcccatgttggaatgttttttagatcaaagattgaagtatagcagagaagagctcctttccatgcggttctcgtctgtttcccttgcagcttctattgatagcggcattggaatatgcaacacacaatcggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

621

Amino Acids

68.85

Weight (kDa)

5.77

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 851
AciI CCGC 6 cut(s) 35, 70, 79, 82, 1795, 1833
AclWI GGATC 3 cut(s) 357, 846, 912
AcsI RAATTY 3 cut(s) 964, 1018, 1330
AcuI CTGAAG 3 cut(s) 850, 1028, 1136
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 546, 712, 1035
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 1443
AjnI CCWGG 2 cut(s) 540, 1161
Alw21I GWGCWC 3 cut(s) 24, 96, 1785
Alw26I GTCTC 5 cut(s) 45, 283, 428, 1163, 1313
AlwI GGATC 3 cut(s) 357, 846, 912
AlwNI CAGNNNCTG 1 cut(s) 1250
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 76, 285, 602, 1358, 1817
ApoI RAATTY 3 cut(s) 964, 1018, 1330
Asp700I GAANNNNTTC 1 cut(s) 1728
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 651, 1546
AsuHPI GGTGA 1 cut(s) 1595
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 651, 1546
AvrII CCTAGG 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 1550
BaeI ACNNNNGTAYC 4 cut(s) 545, 578, 1332, 1365
BanII GRGCYC 3 cut(s) 24, 1509, 1785
BarI GAAGNNNNNNTAC 2 cut(s) 1026, 1058
Bbv12I GWGCWC 3 cut(s) 24, 96, 1785
BbvI GCAGC 5 cut(s) 88, 272, 589, 1370, 1829
BccI CCATC 3 cut(s) 340, 1478, 1537
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 542, 1163
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 5 cut(s) 45, 283, 428, 1163, 1313
BfaI CTAG 3 cut(s) 624, 644, 860
BfmI CTRYAG 2 cut(s) 318, 1005
BisI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1359, 1818, 1834
BlnI CCTAGG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 8 cut(s) 37, 78, 81, 287, 604, 1360, 1819, 1835
Bme1390I CCNGG 2 cut(s) 542, 1163
Bme18I GGWCC 2 cut(s) 651, 1546
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 651, 1546
BmrFI CCNGG 2 cut(s) 542, 1163
BmsI GCATC 7 cut(s) 350, 367, 400, 1095, 1324, 1345, 1567
BoxI GACNNNNGTC 2 cut(s) 656, 1469
BplI GAGNNNNNCTC 2 cut(s) 1767, 1799
BpmI CTGGAG 4 cut(s) 110, 524, 542, 792
Bpu10I CCTNAGC 7 cut(s) 1130, 1191, 1197, 1203, 1209, 1215, 1251
Bpu1102I GCTNAGC 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 1444
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 366, 623
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 18, 559
Bse21I CCTNAGG 1 cut(s) 1550
BseBI CCWGG 2 cut(s) 542, 1163
BseDI CCNNGG 2 cut(s) 366, 623
BseGI GGATG 5 cut(s) 333, 1360, 1448, 1582, 1586
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 18, 559
BseRI GAGGAG 3 cut(s) 113, 206, 346
BseXI GCAGC 5 cut(s) 88, 272, 589, 1370, 1829
BseYI CCCAGC 1 cut(s) 1525
BsgI GTGCAG 2 cut(s) 207, 1656
Bsh1285I CGRYCG 1 cut(s) 1649
BsiEI CGRYCG 1 cut(s) 1649
BsiHKAI GWGCWC 3 cut(s) 24, 96, 1785
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1313
BsmBI CGTCTC 1 cut(s) 428
BsmI GAATGC 2 cut(s) 695, 1476
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 4 cut(s) 24, 96, 1509, 1785
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 6 cut(s) 35, 70, 79, 82, 1795, 1833
BspHI TCATGA 1 cut(s) 1480
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 3 cut(s) 357, 846, 912
BspQI GCTCTTC 2 cut(s) 612, 1773
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 18, 559
BssECI CCNNGG 2 cut(s) 366, 623
BssMI GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 366, 623
Bst2UI CCWGG 2 cut(s) 542, 1163
Bst4CI ACNGT 4 cut(s) 185, 710, 919, 1660
Bst6I CTCTTC 5 cut(s) 158, 475, 612, 783, 1773
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1444
BstC8I GCNNGC 2 cut(s) 111, 382
BstF5I GGATG 5 cut(s) 333, 1360, 1448, 1582, 1586
BstKTI GATC 9 cut(s) 202, 352, 523, 841, 907, 1630, 1649, 1688, 1756
BstMAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1313
BstMBI GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
BstMCI CGRYCG 1 cut(s) 1649
BstMWI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
BstNI CCWGG 2 cut(s) 542, 1163
BstNSI RCATGY 1 cut(s) 954
BstPAI GACNNNNGTC 2 cut(s) 656, 1469
BstSCI CCNGG 2 cut(s) 540, 1161
BstSFI CTRYAG 2 cut(s) 318, 1005
BstV1I GCAGC 5 cut(s) 88, 272, 589, 1370, 1829
BstX2I RGATCY 3 cut(s) 349, 838, 904
BstYI RGATCY 3 cut(s) 349, 838, 904
Bsu36I CCTNAGG 1 cut(s) 1550
BtsCI GGATG 5 cut(s) 333, 1360, 1448, 1582, 1586
BtsIMutI CAGTG 2 cut(s) 190, 516
Cac8I GCNNGC 2 cut(s) 111, 382
CaiI CAGNNNCTG 1 cut(s) 1250
CciI TCATGA 1 cut(s) 1480
Cfr13I GGNCC 2 cut(s) 651, 1546
CseI GACGC 4 cut(s) 46, 125, 233, 646
Csp6I GTAC 3 cut(s) 545, 711, 1034
CviQI GTAC 3 cut(s) 545, 711, 1034
DpnI GATC 9 cut(s) 201, 351, 522, 840, 906, 1629, 1648, 1687, 1755
DpnII GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 158, 475, 612, 783, 1773
EarI CTCTTC 5 cut(s) 158, 475, 612, 783, 1773
EciI GGCGGA 2 cut(s) 85, 97
Ecl136II GAGCTC 2 cut(s) 22, 1783
Eco130I CCWWGG 2 cut(s) 366, 623
Eco24I GRGCYC 3 cut(s) 24, 1509, 1785
Eco47I GGWCC 2 cut(s) 651, 1546
Eco53kI GAGCTC 2 cut(s) 22, 1783
Eco57I CTGAAG 3 cut(s) 850, 1028, 1136
Eco81I CCTNAGG 1 cut(s) 1550
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 2 cut(s) 22, 1783
EcoRII CCWGG 2 cut(s) 540, 1161
EcoT14I CCWWGG 2 cut(s) 366, 623
EcoT38I GRGCYC 3 cut(s) 24, 1509, 1785
ErhI CCWWGG 2 cut(s) 366, 623
Esp3I CGTCTC 1 cut(s) 428
FalI AAGNNNNNCTT 4 cut(s) 1675, 1707, 1770, 1802
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1359, 1818, 1834
FokI GGATG 5 cut(s) 340, 1367, 1435, 1573, 1589
FriOI GRGCYC 3 cut(s) 24, 1509, 1785
Fsp4HI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1359, 1818, 1834
FspBI CTAG 3 cut(s) 624, 644, 860
GluI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1359, 1818, 1834
GsaI CCCAGC 1 cut(s) 1529
GsuI CTGGAG 4 cut(s) 110, 524, 542, 792
HgaI GACGC 4 cut(s) 46, 125, 233, 646
Hin1I GRCGYC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 2 cut(s) 758, 1378
HinfI GANTC 4 cut(s) 85, 932, 979, 1271
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 1 cut(s) 1595
Hpy166II GTNNAC 6 cut(s) 223, 293, 681, 852, 1034, 1636
Hpy188I TCNGA 8 cut(s) 204, 266, 433, 592, 978, 1116, 1494, 1861
Hpy8I GTNNAC 6 cut(s) 223, 293, 681, 852, 1034, 1636
Hpy99I CGWCG 4 cut(s) 62, 119, 132, 147
HpyAV CCTTC 8 cut(s) 111, 158, 168, 722, 1111, 1119, 1600, 1686
HpyCH4III ACNGT 4 cut(s) 185, 710, 919, 1660
HpyCH4IV ACGT 2 cut(s) 219, 1443
HpyCH4V TGCA 9 cut(s) 188, 239, 950, 1007, 1358, 1476, 1673, 1817, 1848
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
HpySE526I ACGT 2 cut(s) 219, 1443
Hsp92I GRCGYC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
LguI GCTCTTC 2 cut(s) 612, 1773
LmnI GCTCC 7 cut(s) 19, 91, 248, 368, 751, 773, 1788
Lsp1109I GCAGC 5 cut(s) 88, 272, 589, 1370, 1829
LweI GCATC 7 cut(s) 350, 367, 400, 1095, 1324, 1345, 1567
MaeI CTAG 3 cut(s) 624, 644, 860
MaeII ACGT 2 cut(s) 219, 1443
MaeIII GTNAC 6 cut(s) 403, 514, 581, 658, 704, 1081
MalI GATC 9 cut(s) 201, 351, 522, 840, 906, 1629, 1648, 1687, 1755
MboI GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
MflI RGATCY 3 cut(s) 349, 838, 904
MhlI GDGCHC 4 cut(s) 24, 96, 1509, 1785
MluCI AATT 6 cut(s) 673, 855, 964, 1018, 1330, 1510
MlyI GAGTC 2 cut(s) 94, 1280
MmeI TCCRAC 3 cut(s) 937, 994, 1719
MroXI GAANNNNTTC 1 cut(s) 1728
MslI CAYNNNNRTG 6 cut(s) 885, 1100, 1224, 1230, 1260, 1485
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 542, 1163
Mva1269I GAATGC 2 cut(s) 695, 1476
MvaI CCWGG 2 cut(s) 542, 1163
MwoI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
NdeI CATATG 1 cut(s) 615
NdeII GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
NmuCI GTSAC 2 cut(s) 514, 658
NspI RCATGY 1 cut(s) 954
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 1480
PciSI GCTCTTC 2 cut(s) 612, 1773
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 262
PctI GAATGC 2 cut(s) 695, 1476
PdmI GAANNNNTTC 1 cut(s) 1728
PfeI GAWTC 2 cut(s) 932, 979
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 8 cut(s) 37, 78, 81, 287, 604, 1360, 1819, 1835
Ple19I CGATCG 1 cut(s) 1649
PleI GAGTC 2 cut(s) 93, 1279
PpsI GAGTC 2 cut(s) 93, 1279
Ppu21I YACGTR 1 cut(s) 1444
PshAI GACNNNNGTC 2 cut(s) 656, 1469
Psp124BI GAGCTC 2 cut(s) 24, 1785
Psp6I CCWGG 2 cut(s) 540, 1161
PspFI CCCAGC 1 cut(s) 1525
PspGI CCWGG 2 cut(s) 540, 1161
PspPI GGNCC 2 cut(s) 651, 1546
PspXI VCTCGAGB 1 cut(s) 167
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1250
PsuI RGATCY 3 cut(s) 349, 838, 904
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 1649
RsaI GTAC 3 cut(s) 546, 712, 1035
RsaNI GTAC 3 cut(s) 545, 711, 1034
RseI CAYNNNNRTG 6 cut(s) 885, 1100, 1224, 1230, 1260, 1485
SacI GAGCTC 2 cut(s) 24, 1785
SapI GCTCTTC 2 cut(s) 612, 1773
SatI GCNGC 8 cut(s) 36, 77, 80, 286, 603, 1359, 1818, 1834
Sau3AI GATC 9 cut(s) 199, 349, 520, 838, 904, 1627, 1646, 1685, 1753
Sau96I GGNCC 2 cut(s) 651, 1546
SchI GAGTC 2 cut(s) 94, 1280
ScrFI CCNGG 2 cut(s) 542, 1163
SduI GDGCHC 4 cut(s) 24, 96, 1509, 1785
SfaNI GCATC 7 cut(s) 350, 367, 400, 1095, 1324, 1345, 1567
SfcI CTRYAG 2 cut(s) 318, 1005
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 651, 1546
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 6 cut(s) 885, 1100, 1224, 1230, 1260, 1485
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 6 cut(s) 673, 855, 964, 1018, 1330, 1510
SsiI CCGC 6 cut(s) 35, 70, 79, 82, 1795, 1833
SspMI CTAG 3 cut(s) 624, 644, 860
SstI GAGCTC 2 cut(s) 24, 1785
StyD4I CCNGG 2 cut(s) 540, 1161
StyI CCWWGG 2 cut(s) 366, 623
TaaI ACNGT 4 cut(s) 185, 710, 919, 1660
TaiI ACGT 2 cut(s) 222, 1446
TaqI TCGA 4 cut(s) 60, 168, 356, 1649
TasI AATT 6 cut(s) 673, 855, 964, 1018, 1330, 1510
TatI WGTACW 1 cut(s) 710
TauI GCSGC 3 cut(s) 38, 82, 1836
TfiI GAWTC 2 cut(s) 932, 979
TscAI CASTG 2 cut(s) 190, 523
TseFI GTSAC 2 cut(s) 514, 658
TseI GCWGC 5 cut(s) 76, 285, 602, 1358, 1817
Tsp45I GTSAC 2 cut(s) 514, 658
TspDTI ATGAA 5 cut(s) 387, 602, 1469, 1503, 1737
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 190, 523
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 651, 1546
XapI RAATTY 3 cut(s) 964, 1018, 1330
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 1 cut(s) 954
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 1728
XspI CTAG 3 cut(s) 624, 644, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.