Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383009.1

Orthogroup ID

OG0010274

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 706

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383009.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

gagccagagcctgagcatgagcatgagcctgagtcagtttcagtcctctcaatgtcagcacttcaaagtctcaggcatctggaaaggttgaatttggcagatacacaagttatggatgcagctctataccctttgacaagcttcccaaagttaagccatttatctcttaaaagtgcttctcttacagacatctcccttaactacgtgtcatccatatcaaagctgacaaatgtctgcattcatgatggtgttctgacaaactctgggctcaattcattcaaacccccagcaactctaagaatgatggacctgaggggttgttggctcttaactgaggatgctatcacatccttctctaaaactcacccccagattgaagtatggcatgatcttgttcacatctcacgatcgaaccagactgtttgtaatactgcaccttcttcaagatcaactttgaggacttcacaagtgaagaagaagcatgaaagtattcccatgttggaatgttttttagatcaaagattgaagtatagcagagaagagctcctttccatgcggttctcgtctgtttcccttgcagcttctattgatagcggcattggaatatgcaacacacaatcggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 LRR_8

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

6.14

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23840
fragaria_vesca	FvH4_5g04510 FvH4_5g04510 FvH4_5g04510 FvH4_5g04510
malus_domestica	MD14G1128100.v1.1
prunus_persica	Prupe.5G118200_v2.0.a1 Prupe.5G118200_v2.0.a1 Prupe.5G118200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0194941
rosa_laevigata	RLG00000004154
rosa_multiflora	Rmu_co8383009.1_g000001 Rmu_sc0008218.1_g000004 Rmu_ssc0000157.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260870
rosa_rugosa	Rorug07G0019300
rosa_samantha	Rh7AG147000 Rh7BG147800 Rh7CG151100 Rh7DG148200
rosa_wichuraiana	Rw7G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	556, 594
AcsI	RAATTY	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	65, 91, 280, 377, 444, 526
AluBI	AGCT	5 cut(s)	122, 141, 223, 544, 581
AluI	AGCT	5 cut(s)	122, 141, 223, 544, 581
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	119, 578
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	307
AxyI	CCTNAGG	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BanII	GRGCYC	2 cut(s)	270, 546
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	131, 590
BccI	CCATC	2 cut(s)	239, 298
BcoDI	GTCTC	1 cut(s)	74
BisI	GCNGC	3 cut(s)	120, 579, 595
BlsI	GCNGC	3 cut(s)	121, 580, 596
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmsI	GCATC	3 cut(s)	85, 106, 328
BoxI	GACNNNNGTC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
Bpu10I	CCTNAGC	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	311
BseGI	GGATG	4 cut(s)	121, 209, 343, 347
BseMII	CTCAG	4 cut(s)	21, 85, 302, 324
BseXI	GCAGC	2 cut(s)	131, 590
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	270, 546
Bsp143I	GATC	4 cut(s)	388, 407, 446, 514
BspACI	CCGC	2 cut(s)	556, 594
BspCNI	CTCAG	5 cut(s)	4, 22, 84, 303, 325
BspHI	TCATGA	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	534
BssMI	GATC	4 cut(s)	388, 407, 446, 514
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	205
BstDEI	CTNAG	6 cut(s)	12, 30, 71, 296, 311, 333
BstF5I	GGATG	4 cut(s)	121, 209, 343, 347
BstKTI	GATC	4 cut(s)	391, 410, 449, 517
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	388, 407, 446, 514
BstMCI	CGRYCG	1 cut(s)	410
BstPAI	GACNNNNGTC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	131, 590
Bsu36I	CCTNAGG	1 cut(s)	311
BtsCI	GGATG	4 cut(s)	121, 209, 343, 347
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	307
CviAII	CATG	7 cut(s)	17, 23, 242, 386, 482, 496, 553
DdeI	CTNAG	6 cut(s)	12, 30, 71, 296, 311, 333
DpnI	GATC	4 cut(s)	390, 409, 448, 516
DpnII	GATC	4 cut(s)	388, 407, 446, 514
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	2 cut(s)	270, 546
Eco47I	GGWCC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	544
Eco81I	CCTNAGG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	270, 546
FaeI	CATG	7 cut(s)	20, 26, 245, 389, 485, 499, 556
FalI	AAGNNNNNCTT	4 cut(s)	436, 468, 531, 563
FatI	CATG	7 cut(s)	16, 22, 241, 385, 481, 495, 552
Fnu4HI	GCNGC	3 cut(s)	120, 579, 595
FokI	GGATG	4 cut(s)	128, 196, 334, 350
FriOI	GRGCYC	2 cut(s)	270, 546
Fsp4HI	GCNGC	3 cut(s)	120, 579, 595
GluI	GCNGC	3 cut(s)	120, 579, 595
GsaI	CCCAGC	1 cut(s)	290
Hin1II	CATG	7 cut(s)	20, 26, 245, 389, 485, 499, 556
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	255, 622
Hpy188III	TCNNGA	4 cut(s)	80, 242, 405, 444
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	361, 447
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	5 cut(s)	119, 237, 434, 578, 609
HpyF3I	CTNAG	6 cut(s)	12, 30, 71, 296, 311, 333
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	20, 26, 245, 389, 485, 499, 556
Kzo9I	GATC	4 cut(s)	388, 407, 446, 514
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	2 cut(s)	131, 590
LweI	GCATC	3 cut(s)	85, 106, 328
MaeII	ACGT	1 cut(s)	204
MalI	GATC	4 cut(s)	390, 409, 448, 516
MboI	GATC	4 cut(s)	388, 407, 446, 514
MboII	GAAGA	4 cut(s)	432, 484, 487, 551
MhlI	GDGCHC	2 cut(s)	270, 546
MluCI	AATT	2 cut(s)	91, 271
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	4 cut(s)	56, 306, 328, 450
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	5 cut(s)	152, 168, 198, 329, 625
MslI	CAYNNNNRTG	2 cut(s)	21, 246
Mva1269I	GAATGC	1 cut(s)	237
NdeII	GATC	4 cut(s)	388, 407, 446, 514
NlaIII	CATG	7 cut(s)	20, 26, 245, 389, 485, 499, 556
PagI	TCATGA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	489
PkrI	GCNGC	3 cut(s)	121, 580, 596
Ple19I	CGATCG	1 cut(s)	410
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	410
RseI	CAYNNNNRTG	2 cut(s)	21, 246
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	152, 168, 198, 329, 625
SatI	GCNGC	3 cut(s)	120, 579, 595
Sau3AI	GATC	4 cut(s)	388, 407, 446, 514
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	270, 546
SetI	ASST	9 cut(s)	89, 124, 143, 207, 225, 312, 439, 546, 583
SfaNI	GCATC	3 cut(s)	85, 106, 328
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	21, 246
Sse9I	AATT	2 cut(s)	91, 271
SsiI	CCGC	2 cut(s)	556, 594
SstI	GAGCTC	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	410
TasI	AATT	2 cut(s)	91, 271
TauI	GCSGC	1 cut(s)	597
Tru1I	TTAA	5 cut(s)	152, 168, 198, 329, 625
Tru9I	TTAA	5 cut(s)	152, 168, 198, 329, 625
TseI	GCWGC	2 cut(s)	119, 578
TspDTI	ATGAA	3 cut(s)	230, 264, 498
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	91
XmnI	GAANNNNTTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.