Rh7CG151100

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010274
Physical Location & Seq
Reverse (-)
12405590 .. 12409010
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG151100.1

Sequence Viewer

Length: 1824 bp
ATGGAGACCCAACTGGTGGACCTCTGCTTAAAAGCGGCGTGTGAAAGCAGAGACAGCGTCGAGAAATGGCGGAGGCAGCGGCGGAGTCTGGAGCACTTGCCTTCTCAGCTCGCCGACGCTCTCCTCCGTCGCCTCATCTCTCGTCGCCTTCTCTTCCCTTCGTTGCTCGAGGTGTTCAAACACAGTGCAGAGGAGATTGATCTGAGAGGCGACAACAACGTTGACGCCGAATGGTTTGCATACATTGGAGCATTTCGTCACCTCCGAAGTTTAAATGTCTCTGGCTGCCGTAAACTCACAAGCTCAGCTCTTTGGGCTGTAGCAGGGATGGGGAGTTTAAGGGAGATGGATCTTTCGAGATGCTCCAAGGTTAATGATGCTGGCATTAGGCATCTTTCATCTGTTACAACTTTGGAAAAGTTATGGATTTCGGAGACGGGGGTGTCTGCTAAAGGGGTTATGCTTCTCTCTTCGCTTGGAAACTTGTCTGTTCTCGACTTGGGTGGTTTGCCTGTCACTGATCAAGCACTCAGTTCTCTCCAGGTACTTACTAAACTCCAGTACCTTGACCTTTGGGGGAGTAACATATCTGACAAGGGTGCTGCTCTTCTTCATATGTTCCCTAGGTTGAGTTTCCTCAATCTAGCTTGGACCAGCGTCACAAAGTTGCCAAATTGGTTAACCCTTGAATGCTTAAACATGAGTAACTGTACAATAAATCTACTTGAAGGAGATAATGGTAAAGCTCGTTTAGTCAAGCTTATTGTTTCTGGAGCTACATTTGGAGAAGAGGTTGCTGATTTCCATTATATAGAAACAACCCCTTTAACCTTTTTGGATCTTTCCAAGTCTACAATTCTAGACTTCAGCTTCTTATCTCATCTAAATGCTCTGGAACACTTGGATCTCAGCTCTACTGTGATAGGAGATGATTCGCTTCAACTTATTGCATGTATTGGAGTGAATTTGAAATATCTGAATCTTAACAACACCAAAGTAAGCTCTGCTGGAGTTGGAAATTTAACAGGGCATGTACCTAATCTTCAGGTTTTGTCTATATCACATACATCAGTAGATGATGTTACCATATCTTACATTGGCATGATGCCTTCTCTGAAGGTTATTGACCTGAGCAATACCAACATTAAAGGTGTCATTTACCAGGCAGAGACTGTGCCTGTGCCTGTGCGTGAGCCTGAGCCAGAGCCTGAGCCTGAGCATGAGCCTGAGTCAGTTTCAGTCCTCTCAATGTCAGCACTTCAAAGTCTCAGGCATCTGGAAAGGTTGAATTTGGCAGATACACAAGTTATGGATGCAGCTCTATACCCTTTAACAAGCTTCCCAAAGTTAAGCCATTTATCTCTTAAAAGTGCTTCTCTTACAGACATCTCCCTTAACTACGTGTCATCCATATCAAAGCTGACAAACGTCTGCATTCATGATGGTGTTCTGACAAACTCTGGGCTCAATTCATTCAAACCCCCAGCAACTCTTAGAATGATGGACCTGAGGGGTTGTTGGCTCTTAACTGAGGATGCTATCACATCCTTCTCTAAAACTCACCCCCAGATTGAAGTATGGCATGATCTTGTTCACATCTCACGATCGAACCAGACTGTTTCTAATACTGCACCTTCTTCAAGATCAACTTTGAAGACTTCACAAGTGAAGAAGAAGCATGAAAGTATTCCCATGTTGGAATGTTTTTTAGATCAAAGATTGAAGTATAGCAGAGAAGAGCTCCTTTCCATGCGGTTCTCGTCTGTTTCCCTTGCAGCTTCTATTGATAGAGGCATTGGAATATGCAACACACAATCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6 LRR_8

Protein Analysis

607

Amino Acids

66.98

Weight (kDa)

6.15

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 82 - 241 4.6e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 851
AciI CCGC 5 cut(s) 35, 70, 79, 82, 1753
AclI AACGTT 1 cut(s) 219
AclWI GGATC 3 cut(s) 357, 846, 912
AcsI RAATTY 3 cut(s) 964, 1018, 1288
AcuI CTGAAG 3 cut(s) 850, 1028, 1136
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 4 cut(s) 546, 563, 712, 1035
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 1401
AjnI CCWGG 2 cut(s) 540, 1161
Alw21I GWGCWC 2 cut(s) 96, 1743
Alw26I GTCTC 5 cut(s) 45, 283, 428, 1163, 1271
AlwI GGATC 3 cut(s) 357, 846, 912
AlwNI CAGNNNCTG 2 cut(s) 1172, 1208
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 76, 285, 602, 1316, 1775
ApoI RAATTY 3 cut(s) 964, 1018, 1288
Asp700I GAANNNNTTC 1 cut(s) 1686
AspA2I CCTAGG 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 19, 651, 1504
AsuHPI GGTGA 2 cut(s) 251, 1553
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 19, 651, 1504
AvrII CCTAGG 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 1508
BaeI ACNNNNGTAYC 4 cut(s) 545, 578, 1290, 1323
BanII GRGCYC 2 cut(s) 1467, 1743
BarI GAAGNNNNNNTAC 2 cut(s) 1026, 1058
BbsI GAAGAC 1 cut(s) 1661
Bbv12I GWGCWC 2 cut(s) 96, 1743
BbvI GCAGC 5 cut(s) 88, 272, 589, 1328, 1787
BccI CCATC 4 cut(s) 322, 340, 1436, 1495
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 542, 1163
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 5 cut(s) 45, 283, 428, 1163, 1271
BfaI CTAG 3 cut(s) 624, 644, 860
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 7 cut(s) 36, 77, 80, 286, 603, 1317, 1776
BlnI CCTAGG 1 cut(s) 623
BlpI GCTNAGC 1 cut(s) 304
BlsI GCNGC 7 cut(s) 37, 78, 81, 287, 604, 1318, 1777
Bme1390I CCNGG 2 cut(s) 542, 1163
Bme18I GGWCC 3 cut(s) 19, 651, 1504
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 19, 651, 1504
BmrFI CCNGG 2 cut(s) 542, 1163
BmsI GCATC 7 cut(s) 350, 367, 400, 1095, 1282, 1303, 1525
BoxI GACNNNNGTC 2 cut(s) 656, 1427
BpiI GAAGAC 1 cut(s) 1661
BplI GAGNNNNNCTC 2 cut(s) 1725, 1757
BpmI CTGGAG 5 cut(s) 110, 524, 542, 792, 1029
Bpu10I CCTNAGC 4 cut(s) 1130, 1197, 1209, 1215
Bpu1102I GCTNAGC 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 1402
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 366, 623
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 18, 559
Bse21I CCTNAGG 1 cut(s) 1508
BseBI CCWGG 2 cut(s) 542, 1163
BseDI CCNNGG 2 cut(s) 366, 623
BseGI GGATG 5 cut(s) 333, 1318, 1406, 1540, 1544
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 18, 559
BseRI GAGGAG 2 cut(s) 113, 206
BseXI GCAGC 5 cut(s) 88, 272, 589, 1328, 1787
BseYI CCCAGC 1 cut(s) 1483
BsgI GTGCAG 2 cut(s) 207, 1614
Bsh1285I CGRYCG 1 cut(s) 1607
BsiEI CGRYCG 1 cut(s) 1607
BsiHKAI GWGCWC 2 cut(s) 96, 1743
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1271
BsmBI CGTCTC 1 cut(s) 428
BsmI GAATGC 2 cut(s) 695, 1434
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 96, 1467, 1743
Bsp1407I TGTACA 1 cut(s) 710
Bsp143I GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
Bsp1720I GCTNAGC 1 cut(s) 304
BspACI CCGC 5 cut(s) 35, 70, 79, 82, 1753
BspHI TCATGA 1 cut(s) 1438
BspPI GGATC 3 cut(s) 357, 846, 912
BspQI GCTCTTC 2 cut(s) 612, 1731
BsrGI TGTACA 1 cut(s) 710
BsrI ACTGG 2 cut(s) 18, 559
BssECI CCNNGG 2 cut(s) 366, 623
BssMI GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 366, 623
Bst2UI CCWGG 2 cut(s) 542, 1163
Bst4CI ACNGT 5 cut(s) 185, 710, 919, 1174, 1618
Bst6I CTCTTC 5 cut(s) 158, 475, 612, 783, 1731
BstACI GRCGYC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 1402
BstC8I GCNNGC 2 cut(s) 111, 382
BstF5I GGATG 5 cut(s) 333, 1318, 1406, 1540, 1544
BstKTI GATC 9 cut(s) 202, 352, 523, 841, 907, 1588, 1607, 1646, 1714
BstMAI GTCTC 5 cut(s) 45, 283, 428, 1163, 1271
BstMBI GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
BstMCI CGRYCG 1 cut(s) 1607
BstMWI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
BstNI CCWGG 2 cut(s) 542, 1163
BstNSI RCATGY 2 cut(s) 954, 1034
BstPAI GACNNNNGTC 2 cut(s) 656, 1427
BstSCI CCNGG 2 cut(s) 540, 1161
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 5 cut(s) 88, 272, 589, 1328, 1787
BstV2I GAAGAC 1 cut(s) 1661
BstX2I RGATCY 3 cut(s) 349, 838, 904
BstYI RGATCY 3 cut(s) 349, 838, 904
Bsu36I CCTNAGG 1 cut(s) 1508
BtsCI GGATG 5 cut(s) 333, 1318, 1406, 1540, 1544
BtsIMutI CAGTG 2 cut(s) 190, 516
Cac8I GCNNGC 2 cut(s) 111, 382
CaiI CAGNNNCTG 2 cut(s) 1172, 1208
CciI TCATGA 1 cut(s) 1438
Cfr13I GGNCC 3 cut(s) 19, 651, 1504
CseI GACGC 4 cut(s) 46, 125, 233, 646
Csp6I GTAC 4 cut(s) 545, 562, 711, 1034
CviQI GTAC 4 cut(s) 545, 562, 711, 1034
DpnI GATC 9 cut(s) 201, 351, 522, 840, 906, 1587, 1606, 1645, 1713
DpnII GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
DraI TTTAAA 1 cut(s) 273
DrdI GACNNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 442
Eam1104I CTCTTC 5 cut(s) 158, 475, 612, 783, 1731
EarI CTCTTC 5 cut(s) 158, 475, 612, 783, 1731
EciI GGCGGA 2 cut(s) 85, 97
Ecl136II GAGCTC 1 cut(s) 1741
Eco130I CCWWGG 2 cut(s) 366, 623
Eco24I GRGCYC 2 cut(s) 1467, 1743
Eco47I GGWCC 3 cut(s) 19, 651, 1504
Eco53kI GAGCTC 1 cut(s) 1741
Eco57I CTGAAG 3 cut(s) 850, 1028, 1136
Eco81I CCTNAGG 1 cut(s) 1508
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 1741
EcoRII CCWGG 2 cut(s) 540, 1161
EcoT14I CCWWGG 2 cut(s) 366, 623
EcoT38I GRGCYC 2 cut(s) 1467, 1743
ErhI CCWWGG 2 cut(s) 366, 623
Esp3I CGTCTC 1 cut(s) 428
FalI AAGNNNNNCTT 4 cut(s) 1633, 1665, 1728, 1760
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 7 cut(s) 36, 77, 80, 286, 603, 1317, 1776
FokI GGATG 5 cut(s) 340, 1325, 1393, 1531, 1547
FriOI GRGCYC 2 cut(s) 1467, 1743
Fsp4HI GCNGC 7 cut(s) 36, 77, 80, 286, 603, 1317, 1776
FspBI CTAG 3 cut(s) 624, 644, 860
GluI GCNGC 7 cut(s) 36, 77, 80, 286, 603, 1317, 1776
GsaI CCCAGC 1 cut(s) 1487
GsuI CTGGAG 5 cut(s) 110, 524, 542, 792, 1029
HgaI GACGC 4 cut(s) 46, 125, 233, 646
Hin1I GRCGYC 1 cut(s) 225
HincII GTYRAC 2 cut(s) 223, 681
HindII GTYRAC 2 cut(s) 223, 681
HindIII AAGCTT 2 cut(s) 758, 1336
HinfI GANTC 4 cut(s) 85, 932, 979, 1229
HpaI GTTAAC 1 cut(s) 681
HphI GGTGA 2 cut(s) 251, 1553
Hpy166II GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1594
Hpy188I TCNGA 8 cut(s) 204, 266, 433, 592, 978, 1116, 1452, 1819
Hpy8I GTNNAC 6 cut(s) 19, 223, 293, 681, 852, 1594
Hpy99I CGWCG 4 cut(s) 62, 119, 132, 147
HpyAV CCTTC 8 cut(s) 111, 158, 168, 722, 1111, 1119, 1558, 1644
HpyCH4III ACNGT 5 cut(s) 185, 710, 919, 1174, 1618
HpyCH4IV ACGT 3 cut(s) 219, 1401, 1428
HpyCH4V TGCA 8 cut(s) 188, 239, 950, 1316, 1434, 1631, 1775, 1806
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
HpySE526I ACGT 3 cut(s) 219, 1401, 1428
Hsp92I GRCGYC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
LguI GCTCTTC 2 cut(s) 612, 1731
LmnI GCTCC 5 cut(s) 91, 248, 368, 773, 1746
Lsp1109I GCAGC 5 cut(s) 88, 272, 589, 1328, 1787
LweI GCATC 7 cut(s) 350, 367, 400, 1095, 1282, 1303, 1525
MaeI CTAG 3 cut(s) 624, 644, 860
MaeII ACGT 3 cut(s) 219, 1401, 1428
MaeIII GTNAC 7 cut(s) 257, 403, 514, 581, 658, 704, 1081
MalI GATC 9 cut(s) 201, 351, 522, 840, 906, 1587, 1606, 1645, 1713
MboI GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
MflI RGATCY 3 cut(s) 349, 838, 904
MhlI GDGCHC 3 cut(s) 96, 1467, 1743
MluCI AATT 6 cut(s) 673, 855, 964, 1018, 1288, 1468
MlyI GAGTC 2 cut(s) 94, 1238
MmeI TCCRAC 2 cut(s) 994, 1677
MroXI GAANNNNTTC 1 cut(s) 1686
MslI CAYNNNNRTG 3 cut(s) 885, 1100, 1443
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 542, 1163
Mva1269I GAATGC 2 cut(s) 695, 1434
MvaI CCWGG 2 cut(s) 542, 1163
MwoI GCNNNNNNNGC 4 cut(s) 54, 76, 106, 314
NdeI CATATG 1 cut(s) 615
NdeII GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
NmuCI GTSAC 3 cut(s) 257, 514, 658
NspI RCATGY 2 cut(s) 954, 1034
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 1438
PciSI GCTCTTC 2 cut(s) 612, 1731
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 262
PctI GAATGC 2 cut(s) 695, 1434
PdmI GAANNNNTTC 1 cut(s) 1686
PfeI GAWTC 2 cut(s) 932, 979
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 7 cut(s) 37, 78, 81, 287, 604, 1318, 1777
Ple19I CGATCG 1 cut(s) 1607
PleI GAGTC 2 cut(s) 93, 1237
PpsI GAGTC 2 cut(s) 93, 1237
Ppu21I YACGTR 1 cut(s) 1402
PshAI GACNNNNGTC 2 cut(s) 656, 1427
Psp124BI GAGCTC 1 cut(s) 1743
Psp1406I AACGTT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 540, 1161
PspFI CCCAGC 1 cut(s) 1483
PspGI CCWGG 2 cut(s) 540, 1161
PspPI GGNCC 3 cut(s) 19, 651, 1504
PspXI VCTCGAGB 1 cut(s) 167
PstNI CAGNNNCTG 2 cut(s) 1172, 1208
PsuI RGATCY 3 cut(s) 349, 838, 904
PsyI GACNNNGTC 1 cut(s) 56
PvuI CGATCG 1 cut(s) 1607
RsaI GTAC 4 cut(s) 546, 563, 712, 1035
RsaNI GTAC 4 cut(s) 545, 562, 711, 1034
RseI CAYNNNNRTG 3 cut(s) 885, 1100, 1443
SacI GAGCTC 1 cut(s) 1743
SapI GCTCTTC 2 cut(s) 612, 1731
SatI GCNGC 7 cut(s) 36, 77, 80, 286, 603, 1317, 1776
Sau3AI GATC 9 cut(s) 199, 349, 520, 838, 904, 1585, 1604, 1643, 1711
Sau96I GGNCC 3 cut(s) 19, 651, 1504
SchI GAGTC 2 cut(s) 94, 1238
ScrFI CCNGG 2 cut(s) 542, 1163
SduI GDGCHC 3 cut(s) 96, 1467, 1743
SfaNI GCATC 7 cut(s) 350, 367, 400, 1095, 1282, 1303, 1525
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 19, 651, 1504
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 3 cut(s) 885, 1100, 1443
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 6 cut(s) 673, 855, 964, 1018, 1288, 1468
SsiI CCGC 5 cut(s) 35, 70, 79, 82, 1753
SspMI CTAG 3 cut(s) 624, 644, 860
SstI GAGCTC 1 cut(s) 1743
StyD4I CCNGG 2 cut(s) 540, 1161
StyI CCWWGG 2 cut(s) 366, 623
TaaI ACNGT 5 cut(s) 185, 710, 919, 1174, 1618
TaiI ACGT 3 cut(s) 222, 1404, 1431
TaqI TCGA 5 cut(s) 60, 168, 356, 495, 1607
TasI AATT 6 cut(s) 673, 855, 964, 1018, 1288, 1468
TatI WGTACW 1 cut(s) 710
TauI GCSGC 2 cut(s) 38, 82
TfiI GAWTC 2 cut(s) 932, 979
TscAI CASTG 2 cut(s) 190, 523
TseFI GTSAC 3 cut(s) 257, 514, 658
TseI GCWGC 5 cut(s) 76, 285, 602, 1316, 1775
Tsp45I GTSAC 3 cut(s) 257, 514, 658
TspDTI ATGAA 5 cut(s) 387, 602, 1427, 1461, 1695
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 190, 523
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 19, 651, 1504
XapI RAATTY 3 cut(s) 964, 1018, 1288
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 954, 1034
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 1686
XspI CTAG 3 cut(s) 624, 644, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.